Wall clock time and date at job start Tue Mar 31 2020 06:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99955 * 2 1 4 4 H 1.48495 * 109.46861 * 274.98769 * 3 2 1 5 5 H 1.48500 * 109.46851 * 34.98306 * 3 2 1 6 6 H 1.48495 * 109.47200 * 154.98192 * 3 2 1 7 7 C 1.38808 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00408 * 187.06124 * 7 2 1 9 9 N 1.36942 * 119.99789 * 7.05530 * 7 2 1 10 10 C 1.47023 * 125.64926 * 354.80455 * 9 7 2 11 11 C 1.54327 * 107.27320 * 178.95747 * 10 9 7 12 12 C 1.55161 * 102.94003 * 337.80639 * 11 10 9 13 13 H 1.09002 * 111.00136 * 277.39014 * 12 11 10 14 14 O 1.42897 * 111.00291 * 153.57683 * 12 11 10 15 15 C 1.35522 * 116.99847 * 149.99977 * 14 12 11 16 16 N 1.32353 * 120.11350 * 359.97438 * 15 14 12 17 17 C 1.31765 * 120.32220 * 180.02562 * 16 15 14 18 18 N 1.31252 * 121.48583 * 359.97438 * 17 16 15 19 19 C 1.33831 * 121.88118 * 0.02562 * 18 17 16 20 20 C 1.37164 * 118.51515 * 359.97438 * 19 18 17 21 21 C 1.52071 * 115.79523 * 180.02562 * 20 19 18 22 22 S 1.83284 * 103.45837 * 17.39891 * 21 20 19 23 23 C 1.52157 * 125.79052 * 179.97438 * 19 18 17 24 24 C 1.47423 * 125.64903 * 174.81952 * 9 7 2 25 25 H 0.96995 * 120.00417 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.88279 * 59.53892 * 10 9 7 27 27 H 1.09007 * 109.87761 * 298.37328 * 10 9 7 28 28 H 1.08994 * 110.71789 * 219.44161 * 11 10 9 29 29 H 1.08998 * 110.87192 * 96.23740 * 11 10 9 30 30 H 1.07994 * 119.25292 * 179.97438 * 17 16 15 31 31 H 1.09001 * 110.62350 * 135.89183 * 21 20 19 32 32 H 1.09003 * 110.62696 * 258.74946 * 21 20 19 33 33 H 1.09004 * 110.62188 * 44.09272 * 23 19 18 34 34 H 1.08998 * 110.62338 * 281.09050 * 23 19 18 35 35 H 1.08998 * 110.36574 * 85.27249 * 24 9 7 36 36 H 1.08998 * 110.36993 * 322.95082 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1072 -1.3947 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2056 0.1155 9 7 1.3334 -2.3836 -0.1446 10 6 -0.1282 -2.5324 -0.2014 11 6 -0.4287 -4.0335 -0.3971 12 6 0.8914 -4.5755 -1.0064 13 1 0.9259 -4.4010 -2.0818 14 8 1.0605 -5.9631 -0.7097 15 6 1.7453 -6.7063 -1.6127 16 7 2.2230 -6.1427 -2.7108 17 6 2.8890 -6.8615 -3.5917 18 7 3.0987 -8.1446 -3.4116 19 6 2.6489 -8.7891 -2.3285 20 6 1.9505 -8.0779 -1.3862 21 6 1.4691 -8.8708 -0.1812 22 16 2.4910 -10.3913 -0.2351 23 6 2.8396 -10.2690 -2.0304 24 6 1.9495 -3.7171 -0.2695 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5265 -1.9621 -1.0405 27 1 -0.5727 -2.1838 0.7309 28 1 -1.2589 -4.1734 -1.0892 29 1 -0.6390 -4.5151 0.5578 30 1 3.2708 -6.3840 -4.4820 31 1 1.6519 -8.3178 0.7402 32 1 0.4108 -9.1129 -0.2787 33 1 3.8638 -10.5747 -2.2439 34 1 2.1317 -10.8699 -2.6012 35 1 2.1560 -4.1334 0.7165 36 1 2.8659 -3.6581 -0.8567 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233896006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:16 Heat of formation + Delta-G solvation = 48.857371 kcal Electronic energy + Delta-G solvation = -20917.326474 eV Core-core repulsion = 17722.357083 eV Total energy + Delta-G solvation = -3194.969391 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52731 -38.98059 -36.51750 -35.29299 -33.04979 -32.15651 -29.58154 -29.32576 -27.82871 -27.13270 -24.67760 -23.26296 -22.95420 -20.59718 -20.24149 -18.46642 -18.23460 -16.98792 -16.44156 -16.23885 -15.35702 -15.02351 -14.84174 -14.70765 -14.38718 -14.11064 -13.87197 -13.59046 -13.36919 -12.94069 -12.47714 -12.39076 -12.14271 -11.81025 -11.19736 -11.02878 -10.97764 -10.86150 -10.66086 -10.42990 -10.15573 -10.03331 -9.97057 -9.78882 -9.51453 -9.02798 -8.64897 -8.12313 -6.93443 -5.79776 -3.13186 0.56892 0.90113 1.33677 1.71417 2.81042 3.37474 3.42835 3.44718 3.47000 3.49816 3.86525 4.19482 4.37678 4.48230 4.68102 4.80150 4.96288 5.08805 5.12865 5.16777 5.34256 5.43639 5.46245 5.59683 5.68458 5.85119 6.13882 6.29110 6.35078 6.48685 6.55823 6.69360 7.24773 7.44330 7.50137 7.73387 7.86198 8.15985 9.13125 9.72921 10.37269 11.32517 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.030556 B = 0.003457 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.117306 B = 8096.762345 C = 8430.034815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.067 3.933 13 H 0.102 0.898 14 O -0.286 6.286 15 C 0.402 3.598 16 N -0.564 5.564 17 C 0.348 3.652 18 N -0.542 5.542 19 C 0.187 3.813 20 C -0.227 4.227 21 C -0.011 4.011 22 S -0.244 6.244 23 C -0.024 4.024 24 C 0.128 3.872 25 H 0.254 0.746 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.207 0.793 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.026 0.974 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.100 -19.440 -4.832 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.054 3.946 11 C -0.178 4.178 12 C 0.010 3.990 13 H 0.120 0.880 14 O -0.187 6.187 15 C 0.211 3.789 16 N -0.294 5.294 17 C 0.060 3.940 18 N -0.262 5.262 19 C 0.046 3.954 20 C -0.234 4.234 21 C -0.160 4.160 22 S -0.018 6.018 23 C -0.173 4.173 24 C 0.001 3.999 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.223 0.777 31 H 0.137 0.863 32 H 0.127 0.873 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.043 0.957 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.545 -19.636 -4.408 20.285 hybrid contribution -0.190 1.602 -0.327 1.646 sum 2.356 -18.034 -4.735 18.794 Atomic orbital electron populations 1.69948 1.04963 1.25287 1.56513 1.24833 0.95736 0.97739 1.01813 0.86081 0.78709 0.83318 0.77573 1.21484 1.21671 1.20551 1.19061 0.91233 0.82217 1.43429 0.90251 1.44315 1.01610 1.00644 1.86270 1.21209 0.84628 0.87205 1.01525 1.23121 0.94518 0.99626 1.00497 1.24062 0.98570 0.74521 1.01820 0.87967 1.86271 1.66148 1.24230 1.42057 1.19968 0.85550 0.87217 0.86163 1.68229 1.16574 1.40426 1.04163 1.24676 0.88227 0.85245 0.95876 1.67921 1.24328 1.11647 1.22312 1.21775 0.89918 0.95067 0.88650 1.20981 1.08190 0.93132 1.01083 1.22622 1.01320 0.93155 0.98901 1.87974 1.67525 1.35981 1.10291 1.22827 1.07733 0.91849 0.94858 1.21773 0.94392 0.86919 0.96799 0.93585 0.92803 0.93311 0.91378 0.91189 0.77675 0.86266 0.87271 0.85538 0.86229 0.95676 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.62 10.36 55.49 0.57 -26.05 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 3 Si 0.91 21.91 29.56 -169.99 -5.02 16.88 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.45 10.27 -15.06 -0.15 -6.61 16 8 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 9 N -0.60 -15.40 3.39 -170.07 -0.58 -15.98 16 10 C 0.18 4.27 5.38 -3.06 -0.02 4.26 16 11 C -0.14 -2.59 6.69 -24.89 -0.17 -2.76 16 12 C 0.07 1.22 3.36 -24.58 -0.08 1.14 16 13 H 0.10 1.93 6.96 -51.93 -0.36 1.56 16 14 O -0.29 -4.66 9.75 -18.26 -0.18 -4.84 16 15 C 0.40 6.02 7.54 -16.47 -0.12 5.89 16 16 N -0.56 -8.37 8.75 -14.57 -0.13 -8.50 16 17 C 0.35 4.23 12.29 -92.64 -1.14 3.09 16 18 N -0.54 -6.61 10.41 -10.50 -0.11 -6.71 16 19 C 0.19 2.17 7.04 -81.39 -0.57 1.60 16 20 C -0.23 -2.86 5.96 -103.47 -0.62 -3.48 16 21 C -0.01 -0.12 7.14 36.68 0.26 0.15 16 22 S -0.24 -2.42 23.44 -107.50 -2.52 -4.94 16 23 C -0.02 -0.21 7.39 36.73 0.27 0.06 16 24 C 0.13 2.75 6.97 -2.53 -0.02 2.73 16 25 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.05 1.40 7.30 -51.93 -0.38 1.03 16 27 H 0.05 1.27 7.61 -51.93 -0.40 0.88 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.21 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.13 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -30.86 313.69 -10.17 -41.03 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -4.49 Total: -1.47 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -2.45 Total: 5.85 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: -0.24 Total: -57.24 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -0.18 Total: -4.84 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.52 Total: -4.94 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.86 -10.17 -41.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233896006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.887 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds