Wall clock time and date at job start Tue Mar 31 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99955 * 2 1 4 4 H 1.48495 * 109.46861 * 274.98769 * 3 2 1 5 5 H 1.48500 * 109.46851 * 34.98306 * 3 2 1 6 6 H 1.48495 * 109.47200 * 154.98192 * 3 2 1 7 7 C 1.38808 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00408 * 187.06124 * 7 2 1 9 9 N 1.36942 * 119.99789 * 7.05530 * 7 2 1 10 10 C 1.47023 * 125.64926 * 354.80455 * 9 7 2 11 11 C 1.54327 * 107.27320 * 178.95747 * 10 9 7 12 12 C 1.55161 * 102.94003 * 337.80639 * 11 10 9 13 13 H 1.09002 * 111.00136 * 277.39014 * 12 11 10 14 14 O 1.42897 * 111.00291 * 153.57683 * 12 11 10 15 15 C 1.35522 * 116.99847 * 149.99977 * 14 12 11 16 16 N 1.32353 * 120.11350 * 359.97438 * 15 14 12 17 17 C 1.31765 * 120.32220 * 180.02562 * 16 15 14 18 18 N 1.31252 * 121.48583 * 359.97438 * 17 16 15 19 19 C 1.33831 * 121.88118 * 0.02562 * 18 17 16 20 20 C 1.37164 * 118.51515 * 359.97438 * 19 18 17 21 21 C 1.52071 * 115.79523 * 180.02562 * 20 19 18 22 22 S 1.83284 * 103.45837 * 17.39891 * 21 20 19 23 23 C 1.52157 * 125.79052 * 179.97438 * 19 18 17 24 24 C 1.47423 * 125.64903 * 174.81952 * 9 7 2 25 25 H 0.96995 * 120.00417 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.88279 * 59.53892 * 10 9 7 27 27 H 1.09007 * 109.87761 * 298.37328 * 10 9 7 28 28 H 1.08994 * 110.71789 * 219.44161 * 11 10 9 29 29 H 1.08998 * 110.87192 * 96.23740 * 11 10 9 30 30 H 1.07994 * 119.25292 * 179.97438 * 17 16 15 31 31 H 1.09001 * 110.62350 * 135.89183 * 21 20 19 32 32 H 1.09003 * 110.62696 * 258.74946 * 21 20 19 33 33 H 1.09004 * 110.62188 * 44.09272 * 23 19 18 34 34 H 1.08998 * 110.62338 * 281.09050 * 23 19 18 35 35 H 1.08998 * 110.36574 * 85.27249 * 24 9 7 36 36 H 1.08998 * 110.36993 * 322.95082 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1072 -1.3947 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2056 0.1155 9 7 1.3334 -2.3836 -0.1446 10 6 -0.1282 -2.5324 -0.2014 11 6 -0.4287 -4.0335 -0.3971 12 6 0.8914 -4.5755 -1.0064 13 1 0.9259 -4.4010 -2.0818 14 8 1.0605 -5.9631 -0.7097 15 6 1.7453 -6.7063 -1.6127 16 7 2.2230 -6.1427 -2.7108 17 6 2.8890 -6.8615 -3.5917 18 7 3.0987 -8.1446 -3.4116 19 6 2.6489 -8.7891 -2.3285 20 6 1.9505 -8.0779 -1.3862 21 6 1.4691 -8.8708 -0.1812 22 16 2.4910 -10.3913 -0.2351 23 6 2.8396 -10.2690 -2.0304 24 6 1.9495 -3.7171 -0.2695 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5265 -1.9621 -1.0405 27 1 -0.5727 -2.1838 0.7309 28 1 -1.2589 -4.1734 -1.0892 29 1 -0.6390 -4.5151 0.5578 30 1 3.2708 -6.3840 -4.4820 31 1 1.6519 -8.3178 0.7402 32 1 0.4108 -9.1129 -0.2787 33 1 3.8638 -10.5747 -2.2439 34 1 2.1317 -10.8699 -2.6012 35 1 2.1560 -4.1334 0.7165 36 1 2.8659 -3.6581 -0.8567 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233896006.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:15 Heat of formation + Delta-G solvation = 29.877582 kcal Electronic energy + Delta-G solvation = -20918.149500 eV Core-core repulsion = 17722.357083 eV Total energy + Delta-G solvation = -3195.792417 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.54902 -40.32069 -38.17216 -36.21012 -34.54980 -33.68373 -31.25319 -30.33585 -29.27397 -28.33791 -26.57530 -24.22072 -24.10783 -22.18106 -21.96582 -19.69477 -19.32980 -18.83522 -17.36576 -17.30899 -16.78750 -16.36118 -16.12629 -15.96307 -15.75563 -15.40196 -15.00112 -14.63274 -14.42136 -14.26851 -14.18806 -13.93326 -13.47562 -13.12101 -12.98112 -12.76371 -12.26165 -12.16941 -12.10567 -12.04043 -11.87152 -11.74950 -11.57238 -11.11303 -10.74024 -10.54783 -10.11050 -8.99680 -8.87022 -7.91721 -5.28062 -0.35903 -0.13653 0.58261 0.94117 1.45288 1.47521 1.55725 1.61555 2.46343 2.50852 2.62653 2.90597 3.27470 3.28262 3.39434 3.59769 3.68073 3.82654 3.88307 4.07779 4.15376 4.19603 4.26572 4.46260 4.49543 4.61322 4.65392 4.76805 4.79492 4.89333 5.13731 5.38418 5.54372 5.63504 5.68967 5.95067 6.13149 6.87981 7.03099 7.67295 8.31143 9.19189 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.030556 B = 0.003457 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.117306 B = 8096.762345 C = 8430.034815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.058 4.058 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.251 4.251 8 H 0.081 0.919 9 N -0.622 5.622 10 C 0.186 3.814 11 C -0.124 4.124 12 C 0.090 3.910 13 H 0.099 0.901 14 O -0.287 6.287 15 C 0.379 3.621 16 N -0.588 5.588 17 C 0.344 3.656 18 N -0.542 5.542 19 C 0.186 3.814 20 C -0.231 4.231 21 C -0.010 4.010 22 S -0.253 6.253 23 C -0.015 4.015 24 C 0.128 3.872 25 H 0.250 0.750 26 H 0.024 0.976 27 H 0.017 0.983 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.237 0.763 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.025 0.975 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 -21.261 -5.615 22.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.808 3.192 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.194 1.194 7 C -0.379 4.379 8 H 0.099 0.901 9 N -0.350 5.350 10 C 0.061 3.939 11 C -0.162 4.162 12 C 0.033 3.967 13 H 0.116 0.884 14 O -0.189 6.189 15 C 0.189 3.811 16 N -0.318 5.318 17 C 0.057 3.943 18 N -0.261 5.261 19 C 0.045 3.955 20 C -0.238 4.238 21 C -0.159 4.159 22 S -0.026 6.026 23 C -0.163 4.163 24 C 0.002 3.998 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.253 0.747 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.043 0.957 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.319 -21.504 -5.204 22.373 hybrid contribution -0.345 2.045 -0.113 2.077 sum 2.973 -19.459 -5.316 20.390 Atomic orbital electron populations 1.70150 1.06273 1.25683 1.57341 1.25669 0.96652 1.00967 1.01847 0.85042 0.77802 0.78920 0.77443 1.21136 1.21815 1.19371 1.19414 0.91646 0.83550 1.43332 0.90145 1.44587 1.02566 1.01596 1.86241 1.20959 0.83722 0.90518 0.98674 1.22928 0.95517 0.95708 1.02037 1.23524 0.96758 0.75611 1.00851 0.88356 1.86236 1.67093 1.22741 1.42826 1.20214 0.86483 0.87966 0.86476 1.68209 1.17405 1.41486 1.04718 1.25319 0.87482 0.85355 0.96183 1.68023 1.24066 1.11603 1.22451 1.22299 0.88821 0.96430 0.87995 1.21206 1.08148 0.92275 1.02121 1.22648 1.02275 0.93084 0.97847 1.88055 1.67542 1.35329 1.11703 1.22987 1.09473 0.89984 0.93881 1.21826 0.95122 0.85852 0.97043 0.94025 0.95728 0.96447 0.88822 0.89800 0.74719 0.86650 0.85777 0.83882 0.83729 0.95738 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.27 10.36 21.65 0.22 -56.04 16 2 C -0.06 -3.28 5.48 84.86 0.46 -2.81 16 3 Si 0.98 45.53 29.56 68.60 2.03 47.55 16 4 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.25 -14.26 10.27 84.03 0.86 -13.39 16 8 H 0.08 4.41 7.84 -2.91 -0.02 4.39 16 9 N -0.62 -32.61 3.39 -691.98 -2.35 -34.96 16 10 C 0.19 9.14 5.38 86.73 0.47 9.61 16 11 C -0.12 -4.53 6.69 31.79 0.21 -4.32 16 12 C 0.09 3.25 3.36 31.99 0.11 3.35 16 13 H 0.10 3.66 6.96 -2.39 -0.02 3.65 16 14 O -0.29 -9.08 9.75 -88.26 -0.86 -9.94 16 15 C 0.38 10.91 7.54 85.17 0.64 11.55 16 16 N -0.59 -16.82 8.75 -312.89 -2.74 -19.56 16 17 C 0.34 7.74 12.29 181.05 2.23 9.97 16 18 N -0.54 -11.94 10.41 -187.13 -1.95 -13.89 16 19 C 0.19 3.87 7.04 42.47 0.30 4.17 16 20 C -0.23 -5.41 5.96 -19.12 -0.11 -5.53 16 21 C -0.01 -0.19 7.14 71.68 0.51 0.33 16 22 S -0.25 -4.42 23.44 -56.49 -1.32 -5.75 16 23 C -0.02 -0.21 7.39 71.70 0.53 0.32 16 24 C 0.13 5.52 6.97 86.85 0.61 6.12 16 25 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.02 1.33 7.30 -2.39 -0.02 1.31 16 27 H 0.02 0.94 7.61 -2.38 -0.02 0.93 16 28 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 29 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.24 3.50 8.06 -2.91 -0.02 3.47 16 31 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -67.34 313.69 0.94 -66.39 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 1.10 Total: 6.82 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 6.81 Total: 19.36 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -6.81 Total: -124.45 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.86 Total: -9.94 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -1.32 Total: -5.75 kcal Total: -67.34 0.94 -66.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233896006.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.272 kcal (2) G-P(sol) polarization free energy of solvation -67.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds