Wall clock time and date at job start Tue Mar 31 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39903 * 119.97364 * 270.54488 * 3 2 1 5 5 C 1.36504 * 120.02613 * 179.73316 * 4 3 2 6 6 C 1.40123 * 119.97037 * 0.26947 * 5 4 3 7 7 C 1.46880 * 120.02090 * 180.02562 * 6 5 4 8 8 C 1.35204 * 119.99945 * 180.02562 * 7 6 5 9 9 C 1.46377 * 120.00249 * 180.02562 * 8 7 6 10 10 C 1.39885 * 120.59976 * 359.71754 * 9 8 7 11 11 C 1.37683 * 120.07717 * 179.78698 * 10 9 8 12 12 C 1.38872 * 121.39277 * 0.48088 * 11 10 9 13 13 C 1.37495 * 121.24718 * 359.77926 * 12 11 10 14 14 F 1.35099 * 120.10373 * 179.97438 * 13 12 11 15 15 C 1.41220 * 119.79359 * 359.97438 * 13 12 11 16 16 C 1.40435 * 120.65515 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99450 * 216.47892 * 16 15 13 18 18 C 1.40170 * 120.00208 * 36.46961 * 16 15 13 19 19 N 1.30730 * 120.00337 * 208.69351 * 18 16 15 20 20 Si 1.86806 * 119.99660 * 28.69585 * 18 16 15 21 21 H 1.48498 * 109.47000 * 95.50796 * 20 18 16 22 22 H 1.48499 * 109.46892 * 215.50275 * 20 18 16 23 23 H 1.48492 * 109.47332 * 335.50191 * 20 18 16 24 24 C 1.40115 * 119.95225 * 0.02562 * 6 5 4 25 25 C 1.36504 * 119.97298 * 0.02562 * 24 6 5 26 26 H 1.07997 * 119.98561 * 0.02562 * 4 3 2 27 27 H 1.08000 * 120.01699 * 180.29657 * 5 4 3 28 28 H 1.08004 * 120.00537 * 0.02562 * 7 6 5 29 29 H 1.07998 * 119.99343 * 359.97438 * 8 7 6 30 30 H 1.08003 * 119.95960 * 0.02624 * 10 9 8 31 31 H 1.07997 * 119.30271 * 180.21667 * 11 10 9 32 32 H 1.07998 * 119.38151 * 179.75780 * 12 11 10 33 33 H 0.97000 * 120.00258 * 180.02562 * 19 18 16 34 34 H 1.07998 * 120.01246 * 179.97438 * 24 6 5 35 35 H 1.08006 * 119.98625 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 -0.0106 1.2119 5 6 4.6320 -0.0155 1.2131 6 6 5.3331 -0.0036 -0.0001 7 6 6.8019 -0.0094 -0.0001 8 6 7.4780 0.0026 -1.1709 9 6 8.9417 -0.0038 -1.1710 10 6 9.6538 -0.0163 0.0330 11 6 11.0306 -0.0266 0.0203 12 6 11.7431 -0.0150 -1.1716 13 6 11.1001 0.0028 -2.3868 14 9 11.8163 0.0144 -3.5323 15 6 9.6887 0.0090 -2.4339 16 6 9.0134 0.0277 -3.6650 17 1 8.0965 0.5888 -3.7694 18 6 9.5294 -0.6817 -4.7583 19 7 9.2925 -0.2691 -5.9760 20 14 10.5556 -2.2168 -4.4754 21 1 9.6873 -3.4175 -4.5726 22 1 11.6242 -2.2942 -5.5036 23 1 11.1710 -2.1589 -3.1252 24 6 4.6320 0.0139 -1.2131 25 6 3.2670 0.0198 -1.2118 26 1 2.7264 -0.0201 2.1467 27 1 5.1714 -0.0290 2.1486 28 1 7.3420 -0.0233 0.9351 29 1 6.9379 0.0161 -2.1061 30 1 9.1230 -0.0218 0.9735 31 1 11.5677 -0.0398 0.9571 32 1 12.8227 -0.0196 -1.1436 33 1 9.6493 -0.7602 -6.7326 34 1 5.1714 0.0235 -2.1487 35 1 2.7264 0.0329 -2.1467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239303847.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:38 Heat of formation + Delta-G solvation = 39.318482 kcal Electronic energy + Delta-G solvation = -20982.018323 eV Core-core repulsion = 17631.271381 eV Total energy + Delta-G solvation = -3350.746942 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.85252 -39.38369 -37.65794 -36.44435 -34.09017 -33.93285 -31.24518 -31.02706 -30.41824 -27.88253 -25.59427 -24.06361 -22.57678 -21.81839 -20.85469 -19.04243 -18.66806 -18.11460 -16.44407 -15.86214 -15.63745 -15.18072 -14.63829 -14.59386 -14.47930 -14.29277 -13.98740 -13.61556 -13.31713 -13.19106 -12.97799 -12.61439 -12.46345 -12.38857 -12.03496 -11.81450 -11.57222 -11.38391 -11.20905 -11.03783 -10.73812 -10.34571 -10.22912 -9.96699 -9.78439 -9.44555 -9.06124 -8.51555 -7.79747 -7.39783 -7.07204 -4.77214 0.53497 1.50040 1.77265 2.32315 2.68767 2.87333 2.98118 3.06999 3.10690 3.44824 3.77569 3.98236 4.08217 4.20992 4.85031 4.90529 4.96964 5.10379 5.37767 5.41287 5.56784 5.60948 5.78485 5.80560 5.95379 6.05171 6.12529 6.18748 6.36064 6.41848 6.44832 6.53746 6.80077 6.87184 6.94228 7.09101 7.15749 7.27165 7.45908 7.51601 7.55971 7.72414 7.88466 8.22137 8.33200 9.56218 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.003770 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.616207 B = 7424.932076 C = 8511.998775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.266 3.734 3 C -0.075 4.075 4 C -0.059 4.059 5 C -0.140 4.140 6 C 0.030 3.970 7 C -0.234 4.234 8 C 0.011 3.989 9 C -0.189 4.189 10 C -0.052 4.052 11 C -0.234 4.234 12 C -0.096 4.096 13 C -0.018 4.018 14 F -0.150 7.150 15 C 0.081 3.919 16 C -0.421 4.421 17 H 0.105 0.895 18 C 0.089 3.911 19 N -0.759 5.759 20 Si 0.919 3.081 21 H -0.282 1.282 22 H -0.274 1.274 23 H -0.240 1.240 24 C -0.143 4.143 25 C -0.054 4.054 26 H 0.125 0.875 27 H 0.129 0.871 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.294 0.706 34 H 0.136 0.864 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 -1.135 7.764 8.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.048 4.048 3 C -0.079 4.079 4 C -0.079 4.079 5 C -0.158 4.158 6 C 0.029 3.971 7 C -0.252 4.252 8 C -0.007 4.007 9 C -0.191 4.191 10 C -0.070 4.070 11 C -0.253 4.253 12 C -0.115 4.115 13 C -0.038 4.038 14 F -0.129 7.129 15 C 0.077 3.923 16 C -0.445 4.445 17 H 0.123 0.877 18 C -0.138 4.138 19 N -0.379 5.379 20 Si 0.744 3.256 21 H -0.209 1.209 22 H -0.199 1.199 23 H -0.164 1.164 24 C -0.160 4.160 25 C -0.075 4.075 26 H 0.143 0.857 27 H 0.147 0.853 28 H 0.135 0.865 29 H 0.137 0.863 30 H 0.125 0.875 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.105 0.895 34 H 0.154 0.846 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.912 -1.098 7.386 8.430 hybrid contribution 1.071 -0.538 -0.359 1.251 sum -2.841 -1.636 7.027 7.755 Atomic orbital electron populations 1.81213 1.12278 1.10533 1.07878 1.25870 0.92791 0.92921 0.93249 1.16000 0.83879 1.12902 0.95114 1.20719 0.94351 0.96726 0.96136 1.20915 0.93305 1.03639 0.97903 1.19376 0.93928 0.91284 0.92487 1.21659 0.90471 1.14678 0.98424 1.22126 0.92873 0.88504 0.97243 1.19476 0.91347 1.16734 0.91515 1.20940 0.93730 0.96028 0.96285 1.20007 0.93824 1.15654 0.95851 1.20623 0.98753 1.00331 0.91818 1.17601 0.89726 1.15571 0.80879 1.91084 1.77968 1.94773 1.49123 1.18707 0.89320 0.91170 0.93092 1.19396 1.09177 1.24494 0.91483 0.87731 1.26446 0.93829 0.99463 0.94028 1.69697 1.32985 1.34805 1.00377 0.86127 0.79148 0.78600 0.81750 1.20880 1.19894 1.16380 1.21149 0.93480 1.02758 0.98653 1.20781 0.94359 0.96078 0.96275 0.85723 0.85273 0.86481 0.86305 0.87478 0.87916 0.87693 0.89478 0.84595 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.59 18.54 41.84 0.78 -5.81 16 2 C 0.27 3.44 15.32 -22.47 -0.34 3.10 16 3 C -0.08 -0.88 5.75 -106.72 -0.61 -1.50 16 4 C -0.06 -0.63 9.69 -39.58 -0.38 -1.01 16 5 C -0.14 -1.57 9.74 -39.50 -0.38 -1.96 16 6 C 0.03 0.40 5.87 -104.99 -0.62 -0.22 16 7 C -0.23 -3.48 9.31 -37.17 -0.35 -3.83 16 8 C 0.01 0.18 8.91 -37.39 -0.33 -0.15 16 9 C -0.19 -3.79 6.06 -102.58 -0.62 -4.41 16 10 C -0.05 -0.94 9.40 -39.17 -0.37 -1.31 16 11 C -0.23 -4.27 9.97 -39.55 -0.39 -4.66 16 12 C -0.10 -1.91 9.94 -39.62 -0.39 -2.30 16 13 C -0.02 -0.41 5.03 -38.72 -0.19 -0.60 16 14 F -0.15 -3.49 13.05 2.25 0.03 -3.46 16 15 C 0.08 1.84 4.99 -104.51 -0.52 1.32 16 16 C -0.42 -9.96 8.60 -38.03 -0.33 -10.29 16 17 H 0.10 2.50 7.29 -52.49 -0.38 2.11 16 18 C 0.09 2.09 4.75 -17.30 -0.08 2.01 16 19 N -0.76 -18.07 13.92 55.56 0.77 -17.30 16 20 Si 0.92 19.52 25.38 -169.99 -4.31 15.21 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.24 -5.27 5.48 56.52 0.31 -4.96 16 24 C -0.14 -1.84 9.35 -39.50 -0.37 -2.21 16 25 C -0.05 -0.64 9.69 -39.58 -0.38 -1.02 16 26 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 27 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.12 1.61 6.10 -52.48 -0.32 1.29 16 29 H 0.12 2.06 4.92 -52.49 -0.26 1.80 16 30 H 0.11 1.63 6.19 -52.48 -0.32 1.31 16 31 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.29 6.32 8.29 -40.82 -0.34 5.98 16 34 H 0.14 1.75 6.15 -52.49 -0.32 1.43 16 35 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 312.19 15.07 4.70 4.70 Total: -1.00 -24.91 312.19 -7.66 -32.57 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -2.95 Total: 3.12 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -6.68 Total: -29.03 kcal Atomic # 7 Polarization: -24.66 SS G_CDS: 1.55 Total: -23.12 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.03 Total: -3.46 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.31 Total: 15.21 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -24.91 -7.66 -32.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239303847.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.890 kcal (2) G-P(sol) polarization free energy of solvation -24.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds