Wall clock time and date at job start Tue Mar 31 2020 06:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39903 * 119.97364 * 270.54488 * 3 2 1 5 5 C 1.36504 * 120.02613 * 179.73316 * 4 3 2 6 6 C 1.40123 * 119.97037 * 0.26947 * 5 4 3 7 7 C 1.46880 * 120.02090 * 180.02562 * 6 5 4 8 8 C 1.35204 * 119.99945 * 180.02562 * 7 6 5 9 9 C 1.46377 * 120.00249 * 180.02562 * 8 7 6 10 10 C 1.39885 * 120.59976 * 359.71754 * 9 8 7 11 11 C 1.37683 * 120.07717 * 179.78698 * 10 9 8 12 12 C 1.38872 * 121.39277 * 0.48088 * 11 10 9 13 13 C 1.37495 * 121.24718 * 359.77926 * 12 11 10 14 14 F 1.35099 * 120.10373 * 179.97438 * 13 12 11 15 15 C 1.41220 * 119.79359 * 359.97438 * 13 12 11 16 16 C 1.40435 * 120.65515 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99450 * 216.47892 * 16 15 13 18 18 C 1.40170 * 120.00208 * 36.46961 * 16 15 13 19 19 N 1.30730 * 120.00337 * 208.69351 * 18 16 15 20 20 Si 1.86806 * 119.99660 * 28.69585 * 18 16 15 21 21 H 1.48498 * 109.47000 * 95.50796 * 20 18 16 22 22 H 1.48499 * 109.46892 * 215.50275 * 20 18 16 23 23 H 1.48492 * 109.47332 * 335.50191 * 20 18 16 24 24 C 1.40115 * 119.95225 * 0.02562 * 6 5 4 25 25 C 1.36504 * 119.97298 * 0.02562 * 24 6 5 26 26 H 1.07997 * 119.98561 * 0.02562 * 4 3 2 27 27 H 1.08000 * 120.01699 * 180.29657 * 5 4 3 28 28 H 1.08004 * 120.00537 * 0.02562 * 7 6 5 29 29 H 1.07998 * 119.99343 * 359.97438 * 8 7 6 30 30 H 1.08003 * 119.95960 * 0.02624 * 10 9 8 31 31 H 1.07997 * 119.30271 * 180.21667 * 11 10 9 32 32 H 1.07998 * 119.38151 * 179.75780 * 12 11 10 33 33 H 0.97000 * 120.00258 * 180.02562 * 19 18 16 34 34 H 1.07998 * 120.01246 * 179.97438 * 24 6 5 35 35 H 1.08006 * 119.98625 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 -0.0106 1.2119 5 6 4.6320 -0.0155 1.2131 6 6 5.3331 -0.0036 -0.0001 7 6 6.8019 -0.0094 -0.0001 8 6 7.4780 0.0026 -1.1709 9 6 8.9417 -0.0038 -1.1710 10 6 9.6538 -0.0163 0.0330 11 6 11.0306 -0.0266 0.0203 12 6 11.7431 -0.0150 -1.1716 13 6 11.1001 0.0028 -2.3868 14 9 11.8163 0.0144 -3.5323 15 6 9.6887 0.0090 -2.4339 16 6 9.0134 0.0277 -3.6650 17 1 8.0965 0.5888 -3.7694 18 6 9.5294 -0.6817 -4.7583 19 7 9.2925 -0.2691 -5.9760 20 14 10.5556 -2.2168 -4.4754 21 1 9.6873 -3.4175 -4.5726 22 1 11.6242 -2.2942 -5.5036 23 1 11.1710 -2.1589 -3.1252 24 6 4.6320 0.0139 -1.2131 25 6 3.2670 0.0198 -1.2118 26 1 2.7264 -0.0201 2.1467 27 1 5.1714 -0.0290 2.1486 28 1 7.3420 -0.0233 0.9351 29 1 6.9379 0.0161 -2.1061 30 1 9.1230 -0.0218 0.9735 31 1 11.5677 -0.0398 0.9571 32 1 12.8227 -0.0196 -1.1436 33 1 9.6493 -0.7602 -6.7326 34 1 5.1714 0.0235 -2.1487 35 1 2.7264 0.0329 -2.1467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239303847.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:37 Heat of formation + Delta-G solvation = 29.572225 kcal Electronic energy + Delta-G solvation = -20982.440952 eV Core-core repulsion = 17631.271381 eV Total energy + Delta-G solvation = -3351.169571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.53577 -40.40926 -39.15090 -37.56795 -35.69604 -35.20408 -32.52318 -32.13034 -31.82240 -29.22887 -27.11737 -25.31696 -23.58921 -23.20938 -22.32742 -20.28121 -19.78317 -19.74135 -17.88445 -17.35535 -17.09516 -16.41751 -16.23385 -15.93726 -15.82260 -15.48379 -15.04773 -14.89926 -14.75453 -14.36852 -14.23225 -13.93468 -13.71228 -13.56620 -13.47379 -13.28624 -13.12389 -12.75680 -12.58312 -12.31563 -12.01839 -11.89608 -11.64272 -11.33529 -11.22150 -11.08667 -9.98675 -9.80031 -9.38723 -9.06201 -8.42688 -6.45251 -0.59035 0.43572 0.56274 0.71842 1.26716 1.39031 1.40045 1.63332 1.65755 2.09904 2.25759 2.52650 2.93747 3.08482 3.41505 3.75496 3.93657 4.02549 4.03933 4.24184 4.40332 4.45290 4.55824 4.59268 4.70556 4.78022 4.89299 4.92626 5.14660 5.24175 5.35771 5.39498 5.43604 5.46375 5.61798 5.74940 5.88262 5.92134 6.01091 6.06688 6.18405 6.29697 6.46961 6.59611 6.74242 7.97122 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019831 B = 0.003770 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.616207 B = 7424.932076 C = 8511.998775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.284 3.716 3 C -0.065 4.065 4 C -0.054 4.054 5 C -0.119 4.119 6 C -0.002 4.002 7 C -0.174 4.174 8 C -0.042 4.042 9 C -0.173 4.173 10 C -0.065 4.065 11 C -0.211 4.211 12 C -0.109 4.109 13 C -0.055 4.055 14 F -0.164 7.164 15 C 0.060 3.940 16 C -0.469 4.469 17 H 0.080 0.920 18 C 0.066 3.934 19 N -0.809 5.809 20 Si 0.953 3.047 21 H -0.275 1.275 22 H -0.271 1.271 23 H -0.250 1.250 24 C -0.145 4.145 25 C -0.060 4.060 26 H 0.156 0.844 27 H 0.161 0.839 28 H 0.142 0.858 29 H 0.106 0.894 30 H 0.148 0.852 31 H 0.143 0.857 32 H 0.126 0.874 33 H 0.297 0.703 34 H 0.126 0.874 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -1.516 12.662 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.029 4.029 3 C -0.068 4.068 4 C -0.074 4.074 5 C -0.136 4.136 6 C -0.003 4.003 7 C -0.192 4.192 8 C -0.060 4.060 9 C -0.175 4.175 10 C -0.083 4.083 11 C -0.230 4.230 12 C -0.128 4.128 13 C -0.075 4.075 14 F -0.144 7.144 15 C 0.057 3.943 16 C -0.496 4.496 17 H 0.097 0.903 18 C -0.155 4.155 19 N -0.432 5.432 20 Si 0.777 3.223 21 H -0.202 1.202 22 H -0.196 1.196 23 H -0.173 1.173 24 C -0.163 4.163 25 C -0.080 4.080 26 H 0.173 0.827 27 H 0.179 0.821 28 H 0.160 0.840 29 H 0.124 0.876 30 H 0.165 0.835 31 H 0.161 0.839 32 H 0.144 0.856 33 H 0.108 0.892 34 H 0.144 0.856 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.925 -1.484 12.293 13.326 hybrid contribution 1.012 -0.358 -1.323 1.704 sum -3.913 -1.841 10.970 11.792 Atomic orbital electron populations 1.81251 1.13322 1.11506 1.08965 1.25940 0.92768 0.91997 0.92239 1.16151 0.83229 1.11737 0.95710 1.21055 0.94304 0.95277 0.96755 1.21228 0.93535 1.00859 0.98011 1.19472 0.93272 0.93935 0.93600 1.22023 0.91410 1.07696 0.98061 1.22009 0.91982 0.93819 0.98171 1.19958 0.92748 1.13324 0.91427 1.21373 0.94077 0.95930 0.96919 1.20569 0.94169 1.11612 0.96641 1.20981 1.00171 1.00207 0.91418 1.18008 0.89988 1.17932 0.81540 1.91032 1.78149 1.95090 1.50081 1.18978 0.89860 0.91666 0.93826 1.19189 1.09632 1.27852 0.92929 0.90257 1.26829 0.94306 1.00504 0.93873 1.69728 1.36333 1.36279 1.00864 0.85623 0.78446 0.77291 0.80964 1.20214 1.19643 1.17335 1.21205 0.94062 1.02382 0.98655 1.20894 0.93959 0.95981 0.97167 0.82666 0.82118 0.84024 0.87581 0.83486 0.83939 0.85600 0.89188 0.85650 0.84390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.06 18.54 19.00 0.35 -12.70 16 2 C 0.28 6.53 15.32 88.33 1.35 7.88 16 3 C -0.06 -1.28 5.75 -21.23 -0.12 -1.40 16 4 C -0.05 -0.86 9.69 22.27 0.22 -0.64 16 5 C -0.12 -2.00 9.74 22.32 0.22 -1.78 16 6 C 0.00 -0.04 5.87 -20.10 -0.12 -0.16 16 7 C -0.17 -4.54 9.31 23.83 0.22 -4.32 16 8 C -0.04 -1.43 8.91 23.69 0.21 -1.22 16 9 C -0.17 -6.81 6.06 -18.54 -0.11 -6.92 16 10 C -0.07 -2.13 9.40 22.54 0.21 -1.92 16 11 C -0.21 -6.88 9.97 22.29 0.22 -6.65 16 12 C -0.11 -4.17 9.94 22.25 0.22 -3.95 16 13 C -0.06 -2.54 5.03 22.83 0.11 -2.42 16 14 F -0.16 -8.01 13.05 44.97 0.59 -7.42 16 15 C 0.06 2.84 4.99 -19.79 -0.10 2.74 16 16 C -0.47 -24.14 8.60 23.27 0.20 -23.94 16 17 H 0.08 4.25 7.29 -2.91 -0.02 4.23 16 18 C 0.07 3.35 4.75 85.33 0.41 3.76 16 19 N -0.81 -42.03 13.92 21.87 0.30 -41.72 16 20 Si 0.95 42.22 25.38 68.60 1.74 43.96 16 21 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.25 -11.27 5.48 99.48 0.55 -10.73 16 24 C -0.15 -3.52 9.35 22.32 0.21 -3.31 16 25 C -0.06 -1.26 9.69 22.27 0.22 -1.05 16 26 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 27 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 28 H 0.14 3.01 6.10 -2.91 -0.02 2.99 16 29 H 0.11 3.90 4.92 -2.91 -0.01 3.89 16 30 H 0.15 3.56 6.19 -2.91 -0.02 3.54 16 31 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 32 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 33 H 0.30 13.96 8.29 -92.71 -0.77 13.19 16 34 H 0.13 3.33 6.15 -2.91 -0.02 3.32 16 35 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -58.53 312.19 7.54 -51.00 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.98 Total: 12.20 kcal Atomic # 6 Polarization: -48.88 SS G_CDS: 3.57 Total: -45.32 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.66 Total: -54.42 kcal Atomic # 9 Polarization: -8.01 SS G_CDS: 0.59 Total: -7.42 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.74 Total: 43.96 kcal Total: -58.53 7.54 -51.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239303847.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.569 kcal (2) G-P(sol) polarization free energy of solvation -58.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds