Wall clock time and date at job start Tue Mar 31 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30789 * 1 3 3 Si 1.86797 * 120.00345 * 2 1 4 4 H 1.48495 * 109.47387 * 270.00102 * 3 2 1 5 5 H 1.48505 * 109.46905 * 29.99966 * 3 2 1 6 6 H 1.48502 * 109.47342 * 149.99880 * 3 2 1 7 7 C 1.40076 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00137 * 160.02839 * 7 2 1 9 9 C 1.40765 * 120.00231 * 340.03331 * 7 2 1 10 10 C 1.41040 * 120.34685 * 323.30887 * 9 7 2 11 11 F 1.35105 * 120.09888 * 0.02562 * 10 9 7 12 12 C 1.37717 * 119.80362 * 179.76678 * 10 9 7 13 13 C 1.38831 * 120.52782 * 0.53678 * 12 10 9 14 14 C 1.38109 * 120.72114 * 359.43528 * 13 12 10 15 15 C 1.39111 * 120.17425 * 0.30170 * 14 13 12 16 16 C 1.47807 * 120.26249 * 179.97438 * 15 14 13 17 17 C 1.40669 * 119.80908 * 130.00401 * 16 15 14 18 18 C 1.35679 * 120.92110 * 179.97438 * 17 16 15 19 19 C 1.40805 * 120.11874 * 359.97438 * 18 17 16 20 20 N 1.33634 * 120.83374 * 180.02562 * 19 18 17 21 21 C 1.31127 * 121.39469 * 179.97438 * 20 19 18 22 22 C 1.39308 * 121.78079 * 0.02562 * 21 20 19 23 23 C 1.36581 * 119.89886 * 359.97438 * 22 21 20 24 24 C 1.40895 * 118.15608 * 359.97438 * 23 22 21 25 25 C 1.38647 * 119.81170 * 309.72109 * 16 15 14 26 26 H 0.96998 * 119.99312 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.73960 * 180.25327 * 12 10 9 28 28 H 1.08003 * 119.64183 * 179.71869 * 13 12 10 29 29 H 1.08008 * 119.91302 * 180.27926 * 14 13 12 30 30 H 1.07999 * 119.53816 * 359.97438 * 17 16 15 31 31 H 1.07997 * 119.93351 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.10786 * 180.02562 * 21 20 19 33 33 H 1.07997 * 120.05258 * 179.97438 * 22 21 20 34 34 H 1.08008 * 120.92215 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.29899 * 0.03191 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4895 2.0464 -1.4000 5 1 1.4394 2.6526 0.7001 6 1 3.5395 1.4401 0.7001 7 6 2.0082 -1.2131 0.0005 8 1 3.0395 -1.2414 -0.3189 9 6 1.3679 -2.3954 0.4173 10 6 0.4390 -2.3666 1.4782 11 9 0.1578 -1.2013 2.1012 12 6 -0.1846 -3.5291 1.8737 13 6 0.1019 -4.7326 1.2436 14 6 1.0074 -4.7857 0.2022 15 6 1.6505 -3.6284 -0.2250 16 6 2.6203 -3.6831 -1.3390 17 6 2.5077 -2.7772 -2.4093 18 6 3.3858 -2.8070 -3.4432 19 6 4.4293 -3.7523 -3.4570 20 7 5.3024 -3.7940 -4.4678 21 6 6.2785 -4.6693 -4.4916 22 6 6.4558 -5.5986 -3.4690 23 6 5.5993 -5.6119 -2.4052 24 6 4.5525 -4.6692 -2.3826 25 6 3.6394 -4.6230 -1.3202 26 1 -0.4849 0.8401 0.0004 27 1 -0.8988 -3.5052 2.6835 28 1 -0.3921 -5.6364 1.5684 29 1 1.2172 -5.7282 -0.2817 30 1 1.7111 -2.0480 -2.4080 31 1 3.2842 -2.1043 -4.2569 32 1 6.9634 -4.6698 -5.3266 33 1 7.2692 -6.3073 -3.5174 34 1 5.7212 -6.3254 -1.6035 35 1 3.7271 -5.3151 -0.4958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241400930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:24 Heat of formation + Delta-G solvation = 23.161271 kcal Electronic energy + Delta-G solvation = -22071.191076 eV Core-core repulsion = 18719.743505 eV Total energy + Delta-G solvation = -3351.447571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.09444 -40.32673 -37.96059 -36.02930 -33.84281 -33.12030 -31.30655 -29.92718 -29.59593 -27.94251 -25.45961 -23.91373 -23.08943 -21.81675 -20.94532 -20.47202 -17.66790 -17.59996 -16.67319 -16.40714 -15.49201 -15.33168 -14.63443 -14.36491 -14.06043 -13.92749 -13.83420 -13.80348 -13.34029 -12.93695 -12.75261 -12.60889 -12.14781 -11.65840 -11.59298 -11.39521 -11.12049 -10.97932 -10.95460 -10.73002 -10.62482 -10.26771 -10.22231 -9.61624 -9.20937 -9.17468 -8.35483 -7.98278 -7.41250 -7.23355 -6.97043 -4.57159 0.77418 1.20769 2.31068 2.56773 2.63654 3.03243 3.04345 3.10418 3.45432 3.85306 4.42358 4.55623 4.63981 4.91455 5.05064 5.17102 5.23160 5.32933 5.59197 5.66435 5.83311 5.88725 5.93308 5.95779 6.16088 6.20676 6.29358 6.43558 6.56289 6.58588 6.79047 6.88040 6.93333 6.99673 7.13839 7.30928 7.35233 7.46892 7.65815 7.70952 7.97267 8.23719 8.24813 8.56684 8.67096 10.00010 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.005677 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.253303 B = 4931.005753 C = 6263.799902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.080 3.920 3 Si 0.904 3.096 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.088 0.912 9 C 0.107 3.893 10 C 0.042 3.958 11 F -0.142 7.142 12 C -0.130 4.130 13 C -0.215 4.215 14 C -0.078 4.078 15 C -0.164 4.164 16 C 0.034 3.966 17 C -0.058 4.058 18 C -0.113 4.113 19 C 0.114 3.886 20 N -0.474 5.474 21 C 0.106 3.894 22 C -0.186 4.186 23 C -0.064 4.064 24 C -0.090 4.090 25 C -0.129 4.129 26 H 0.287 0.713 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.403 -6.525 -3.516 9.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.483 4.483 8 H 0.106 0.894 9 C 0.104 3.896 10 C 0.022 3.978 11 F -0.121 7.121 12 C -0.150 4.150 13 C -0.234 4.234 14 C -0.097 4.097 15 C -0.165 4.165 16 C 0.034 3.966 17 C -0.078 4.078 18 C -0.132 4.132 19 C -0.008 4.008 20 N -0.181 5.181 21 C -0.066 4.066 22 C -0.206 4.206 23 C -0.090 4.090 24 C -0.092 4.092 25 C -0.148 4.148 26 H 0.098 0.902 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.975 -5.649 -4.150 9.211 hybrid contribution 0.316 0.342 0.867 0.984 sum 6.291 -5.307 -3.283 8.861 Atomic orbital electron populations 1.69726 1.07843 1.30326 1.31059 1.25844 0.94617 1.01325 0.92392 0.86338 0.80866 0.80554 0.79424 1.19213 1.19880 1.18263 1.19348 0.99256 0.90992 1.38692 0.89412 1.17440 0.90312 0.92397 0.89490 1.17778 1.03421 0.80526 0.96076 1.91341 1.92584 1.47359 1.80828 1.20677 1.00555 0.92638 1.01095 1.20079 1.05288 0.96136 1.01911 1.20638 0.96743 0.95929 0.96364 1.18393 1.04850 0.93872 0.99431 1.18819 0.92668 0.92291 0.92800 1.21294 0.98215 0.96998 0.91306 1.20641 0.94320 0.98534 0.99684 1.18888 0.95360 0.95908 0.90607 1.67933 1.03298 1.21909 1.25002 1.22731 0.95070 0.91224 0.97586 1.21710 1.01278 1.01490 0.96131 1.21434 0.93178 0.96637 0.97741 1.18736 0.97059 0.97138 0.96279 1.21288 0.94790 1.00983 0.97771 0.90223 0.88002 0.88165 0.88378 0.84144 0.85409 0.83308 0.85363 0.85024 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.23 11.13 55.55 0.62 -18.61 16 2 C 0.08 1.94 4.51 -17.31 -0.08 1.86 16 3 Si 0.90 18.51 29.60 -169.99 -5.03 13.48 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.25 6.62 -37.94 -0.25 -11.51 16 8 H 0.09 2.15 7.24 -52.49 -0.38 1.77 16 9 C 0.11 2.65 5.39 -106.49 -0.57 2.07 16 10 C 0.04 1.05 6.68 -38.71 -0.26 0.79 16 11 F -0.14 -3.70 14.27 2.25 0.03 -3.67 16 12 C -0.13 -2.87 9.99 -39.55 -0.40 -3.26 16 13 C -0.21 -4.34 10.02 -39.41 -0.40 -4.74 16 14 C -0.08 -1.59 9.47 -39.31 -0.37 -1.97 16 15 C -0.16 -3.63 5.50 -104.27 -0.57 -4.21 16 16 C 0.03 0.69 4.96 -104.91 -0.52 0.17 16 17 C -0.06 -1.16 8.10 -39.58 -0.32 -1.48 16 18 C -0.11 -2.08 9.95 -39.53 -0.39 -2.47 16 19 C 0.11 2.07 6.61 -84.76 -0.56 1.51 16 20 N -0.47 -8.03 10.33 -10.90 -0.11 -8.14 16 21 C 0.11 1.43 11.14 -17.45 -0.19 1.24 16 22 C -0.19 -2.26 10.03 -39.78 -0.40 -2.65 16 23 C -0.06 -0.88 9.89 -39.18 -0.39 -1.26 16 24 C -0.09 -1.54 5.74 -106.82 -0.61 -2.15 16 25 C -0.13 -2.31 9.25 -38.71 -0.36 -2.67 16 26 H 0.29 6.62 8.29 -40.82 -0.34 6.28 16 27 H 0.10 2.02 8.06 -52.48 -0.42 1.59 16 28 H 0.10 1.74 8.06 -52.48 -0.42 1.31 16 29 H 0.10 1.74 8.03 -52.48 -0.42 1.32 16 30 H 0.14 2.94 7.27 -52.49 -0.38 2.56 16 31 H 0.13 2.14 8.06 -52.49 -0.42 1.71 16 32 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 35 H 0.12 2.01 8.03 -52.49 -0.42 1.59 16 LS Contribution 307.74 15.07 4.64 4.64 Total: -1.00 -27.35 307.74 -9.78 -37.13 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -3.28 Total: 5.89 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -6.65 Total: -30.72 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.51 Total: -26.75 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.03 Total: -3.67 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.35 -9.78 -37.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241400930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.292 kcal (2) G-P(sol) polarization free energy of solvation -27.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds