Wall clock time and date at job start Tue Mar 31 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30789 * 1 3 3 Si 1.86797 * 120.00345 * 2 1 4 4 H 1.48495 * 109.47387 * 270.00102 * 3 2 1 5 5 H 1.48505 * 109.46905 * 29.99966 * 3 2 1 6 6 H 1.48502 * 109.47342 * 149.99880 * 3 2 1 7 7 C 1.40076 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00137 * 160.02839 * 7 2 1 9 9 C 1.40765 * 120.00231 * 340.03331 * 7 2 1 10 10 C 1.41040 * 120.34685 * 323.30887 * 9 7 2 11 11 F 1.35105 * 120.09888 * 0.02562 * 10 9 7 12 12 C 1.37717 * 119.80362 * 179.76678 * 10 9 7 13 13 C 1.38831 * 120.52782 * 0.53678 * 12 10 9 14 14 C 1.38109 * 120.72114 * 359.43528 * 13 12 10 15 15 C 1.39111 * 120.17425 * 0.30170 * 14 13 12 16 16 C 1.47807 * 120.26249 * 179.97438 * 15 14 13 17 17 C 1.40669 * 119.80908 * 130.00401 * 16 15 14 18 18 C 1.35679 * 120.92110 * 179.97438 * 17 16 15 19 19 C 1.40805 * 120.11874 * 359.97438 * 18 17 16 20 20 N 1.33634 * 120.83374 * 180.02562 * 19 18 17 21 21 C 1.31127 * 121.39469 * 179.97438 * 20 19 18 22 22 C 1.39308 * 121.78079 * 0.02562 * 21 20 19 23 23 C 1.36581 * 119.89886 * 359.97438 * 22 21 20 24 24 C 1.40895 * 118.15608 * 359.97438 * 23 22 21 25 25 C 1.38647 * 119.81170 * 309.72109 * 16 15 14 26 26 H 0.96998 * 119.99312 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.73960 * 180.25327 * 12 10 9 28 28 H 1.08003 * 119.64183 * 179.71869 * 13 12 10 29 29 H 1.08008 * 119.91302 * 180.27926 * 14 13 12 30 30 H 1.07999 * 119.53816 * 359.97438 * 17 16 15 31 31 H 1.07997 * 119.93351 * 179.97438 * 18 17 16 32 32 H 1.08001 * 119.10786 * 180.02562 * 21 20 19 33 33 H 1.07997 * 120.05258 * 179.97438 * 22 21 20 34 34 H 1.08008 * 120.92215 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.29899 * 0.03191 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4895 2.0464 -1.4000 5 1 1.4394 2.6526 0.7001 6 1 3.5395 1.4401 0.7001 7 6 2.0082 -1.2131 0.0005 8 1 3.0395 -1.2414 -0.3189 9 6 1.3679 -2.3954 0.4173 10 6 0.4390 -2.3666 1.4782 11 9 0.1578 -1.2013 2.1012 12 6 -0.1846 -3.5291 1.8737 13 6 0.1019 -4.7326 1.2436 14 6 1.0074 -4.7857 0.2022 15 6 1.6505 -3.6284 -0.2250 16 6 2.6203 -3.6831 -1.3390 17 6 2.5077 -2.7772 -2.4093 18 6 3.3858 -2.8070 -3.4432 19 6 4.4293 -3.7523 -3.4570 20 7 5.3024 -3.7940 -4.4678 21 6 6.2785 -4.6693 -4.4916 22 6 6.4558 -5.5986 -3.4690 23 6 5.5993 -5.6119 -2.4052 24 6 4.5525 -4.6692 -2.3826 25 6 3.6394 -4.6230 -1.3202 26 1 -0.4849 0.8401 0.0004 27 1 -0.8988 -3.5052 2.6835 28 1 -0.3921 -5.6364 1.5684 29 1 1.2172 -5.7282 -0.2817 30 1 1.7111 -2.0480 -2.4080 31 1 3.2842 -2.1043 -4.2569 32 1 6.9634 -4.6698 -5.3266 33 1 7.2692 -6.3073 -3.5174 34 1 5.7212 -6.3254 -1.6035 35 1 3.7271 -5.3151 -0.4958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241400930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:23 Heat of formation + Delta-G solvation = 10.771962 kcal Electronic energy + Delta-G solvation = -22071.728317 eV Core-core repulsion = 18719.743505 eV Total energy + Delta-G solvation = -3351.984812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.98150 -41.58120 -39.53348 -37.45129 -35.59217 -34.33498 -32.81850 -31.49871 -31.00898 -29.44567 -27.19192 -25.21383 -24.42842 -23.21838 -22.56281 -22.04706 -19.38646 -18.98763 -18.11819 -17.59839 -17.18663 -16.83771 -16.35449 -16.02998 -15.71736 -15.34132 -15.22162 -15.16702 -14.73576 -14.56154 -14.01830 -13.86463 -13.75887 -13.35430 -13.21125 -13.02435 -12.66833 -12.54634 -12.45871 -12.28943 -12.15428 -11.89165 -11.41323 -11.30250 -10.96218 -10.35551 -9.79316 -9.40862 -9.11517 -8.83129 -8.69420 -6.39634 -0.46810 -0.06621 0.76296 0.90225 1.18994 1.32617 1.40428 1.45493 2.13825 2.15774 2.68350 3.23197 3.46409 3.49794 3.75884 3.90629 3.98309 4.12733 4.19929 4.31886 4.33395 4.41047 4.55937 4.65546 4.72182 4.81921 4.94329 5.07558 5.14123 5.21527 5.25036 5.27633 5.42066 5.62095 5.67773 5.70966 5.74684 5.90493 6.01838 6.09056 6.24732 6.45041 6.79558 6.89579 7.06999 8.26280 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.005677 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.253303 B = 4931.005753 C = 6263.799902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.046 3.954 3 Si 0.960 3.040 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.480 4.480 8 H 0.076 0.924 9 C 0.076 3.924 10 C 0.001 3.999 11 F -0.159 7.159 12 C -0.137 4.137 13 C -0.201 4.201 14 C -0.084 4.084 15 C -0.159 4.159 16 C -0.002 4.002 17 C -0.072 4.072 18 C -0.118 4.118 19 C 0.097 3.903 20 N -0.508 5.508 21 C 0.116 3.884 22 C -0.171 4.171 23 C -0.063 4.063 24 C -0.110 4.110 25 C -0.109 4.109 26 H 0.288 0.712 27 H 0.120 0.880 28 H 0.139 0.861 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.132 0.868 32 H 0.188 0.812 33 H 0.177 0.823 34 H 0.165 0.835 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.039 -9.700 -4.292 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.172 4.172 3 Si 0.781 3.219 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.508 4.508 8 H 0.094 0.906 9 C 0.073 3.927 10 C -0.020 4.020 11 F -0.138 7.138 12 C -0.156 4.156 13 C -0.220 4.220 14 C -0.102 4.102 15 C -0.160 4.160 16 C -0.002 4.002 17 C -0.092 4.092 18 C -0.136 4.136 19 C -0.024 4.024 20 N -0.217 5.217 21 C -0.057 4.057 22 C -0.190 4.190 23 C -0.089 4.089 24 C -0.112 4.112 25 C -0.128 4.128 26 H 0.099 0.901 27 H 0.138 0.862 28 H 0.157 0.843 29 H 0.148 0.852 30 H 0.131 0.869 31 H 0.150 0.850 32 H 0.205 0.795 33 H 0.194 0.806 34 H 0.183 0.817 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.606 -8.832 -4.925 13.278 hybrid contribution -0.273 0.985 0.939 1.388 sum 8.333 -7.847 -3.986 12.120 Atomic orbital electron populations 1.69774 1.08958 1.30872 1.33533 1.26473 0.95148 1.03805 0.91782 0.85515 0.79426 0.77317 0.79618 1.18394 1.19283 1.18618 1.19310 0.98888 0.92017 1.40619 0.90592 1.17795 0.91197 0.93642 0.90038 1.18212 1.05381 0.81026 0.97345 1.91277 1.92880 1.48443 1.81170 1.20997 1.00557 0.92386 1.01658 1.20569 1.04053 0.96681 1.00651 1.21035 0.96137 0.96599 0.96420 1.18773 1.04492 0.93632 0.99128 1.18788 0.94268 0.94347 0.92803 1.21020 0.98459 0.97209 0.92534 1.20697 0.94544 0.99092 0.99310 1.18990 0.95576 0.96134 0.91663 1.67972 1.04617 1.24002 1.25109 1.23586 0.93736 0.89585 0.98747 1.22237 1.01421 1.01012 0.94329 1.21858 0.91829 0.95984 0.99238 1.18972 0.98277 0.98236 0.95731 1.21482 0.93547 0.99569 0.98203 0.90096 0.86154 0.84300 0.85158 0.86915 0.85038 0.79467 0.80589 0.81730 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.12 11.13 21.85 0.24 -42.88 16 2 C 0.05 2.34 4.51 85.29 0.38 2.72 16 3 Si 0.96 40.02 29.60 68.60 2.03 42.05 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.48 -25.34 6.62 23.33 0.15 -25.19 16 8 H 0.08 4.02 7.24 -2.91 -0.02 4.00 16 9 C 0.08 3.96 5.39 -21.07 -0.11 3.85 16 10 C 0.00 0.03 6.68 22.83 0.15 0.18 16 11 F -0.16 -8.72 14.27 44.97 0.64 -8.07 16 12 C -0.14 -6.02 9.99 22.29 0.22 -5.80 16 13 C -0.20 -7.71 10.02 22.38 0.22 -7.48 16 14 C -0.08 -3.29 9.47 22.45 0.21 -3.07 16 15 C -0.16 -7.18 5.50 -19.64 -0.11 -7.29 16 16 C 0.00 -0.08 4.96 -20.05 -0.10 -0.18 16 17 C -0.07 -3.04 8.10 22.27 0.18 -2.86 16 18 C -0.12 -4.49 9.95 22.30 0.22 -4.27 16 19 C 0.10 3.44 6.61 40.37 0.27 3.70 16 20 N -0.51 -16.18 10.33 -188.41 -1.95 -18.13 16 21 C 0.12 2.60 11.14 85.06 0.95 3.54 16 22 C -0.17 -3.14 10.03 22.14 0.22 -2.92 16 23 C -0.06 -1.44 9.89 22.53 0.22 -1.22 16 24 C -0.11 -3.52 5.74 -21.29 -0.12 -3.64 16 25 C -0.11 -3.76 9.25 22.83 0.21 -3.55 16 26 H 0.29 14.21 8.29 -92.71 -0.77 13.45 16 27 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 28 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 29 H 0.13 4.22 8.03 -2.91 -0.02 4.20 16 30 H 0.11 5.24 7.27 -2.91 -0.02 5.22 16 31 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 33 H 0.18 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.17 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.15 4.25 8.03 -2.91 -0.02 4.23 16 Total: -1.00 -64.19 307.74 5.27 -58.92 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 1.12 Total: 21.58 kcal Atomic # 6 Polarization: -56.65 SS G_CDS: 3.18 Total: -53.47 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: -1.70 Total: -61.01 kcal Atomic # 9 Polarization: -8.72 SS G_CDS: 0.64 Total: -8.07 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -64.19 5.27 -58.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241400930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.691 kcal (2) G-P(sol) polarization free energy of solvation -64.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds