Wall clock time and date at job start Tue Mar 31 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86794 * 120.00081 * 2 1 4 4 H 1.48506 * 109.46972 * 179.72401 * 3 2 1 5 5 H 1.48500 * 109.47368 * 299.72046 * 3 2 1 6 6 H 1.48494 * 109.47521 * 59.72395 * 3 2 1 7 7 C 1.40075 * 119.99861 * 179.72255 * 2 1 3 8 8 H 1.07998 * 120.00369 * 156.02249 * 7 2 1 9 9 C 1.40762 * 119.99942 * 336.02179 * 7 2 1 10 10 C 1.41046 * 120.35064 * 323.40743 * 9 7 2 11 11 F 1.35098 * 120.09493 * 359.97438 * 10 9 7 12 12 C 1.37715 * 119.80021 * 179.78898 * 10 9 7 13 13 C 1.38830 * 120.53328 * 0.46705 * 12 10 9 14 14 C 1.38108 * 120.72456 * 359.78534 * 13 12 10 15 15 C 1.39115 * 120.17097 * 359.97438 * 14 13 12 16 16 C 1.47796 * 120.26537 * 180.02562 * 15 14 13 17 17 C 1.40683 * 119.70892 * 129.70239 * 16 15 14 18 18 C 1.35809 * 120.87720 * 179.74976 * 17 16 15 19 19 C 1.40446 * 119.85510 * 0.52115 * 18 17 16 20 20 C 1.40600 * 121.97270 * 179.71607 * 19 18 17 21 21 C 1.36267 * 118.73306 * 180.02562 * 20 19 18 22 22 N 1.32592 * 121.90596 * 359.97295 * 21 20 19 23 23 C 1.31244 * 122.73303 * 0.05383 * 22 21 20 24 24 C 1.40571 * 119.88115 * 359.94753 * 23 22 21 25 25 C 1.38686 * 119.70829 * 309.97285 * 16 15 14 26 26 H 0.97006 * 120.00131 * 174.87446 * 1 2 3 27 27 H 1.07998 * 119.73204 * 180.22893 * 12 10 9 28 28 H 1.08005 * 119.64170 * 179.76072 * 13 12 10 29 29 H 1.07996 * 119.91873 * 179.97438 * 14 13 12 30 30 H 1.07999 * 119.56265 * 0.02562 * 17 16 15 31 31 H 1.08007 * 120.07417 * 180.25327 * 18 17 16 32 32 H 1.07991 * 120.63332 * 0.04316 * 20 19 18 33 33 H 1.08001 * 119.04365 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.05910 * 179.97438 * 23 22 21 35 35 H 1.07998 * 120.34328 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.7019 1.3463 0.0067 5 1 1.8883 2.3935 -1.2159 6 1 1.8782 2.3993 1.2090 7 6 2.0082 -1.2131 0.0059 8 1 3.0183 -1.2554 -0.3740 9 6 1.3955 -2.3771 0.5069 10 6 0.5308 -2.3051 1.6189 11 9 0.2860 -1.1156 2.2108 12 6 -0.0660 -3.4504 2.0971 13 6 0.1838 -4.6783 1.4993 14 6 1.0307 -4.7747 0.4127 15 6 1.6456 -3.6360 -0.0978 16 6 2.5519 -3.7368 -1.2609 17 6 2.3712 -2.8798 -2.3619 18 6 3.1931 -2.9484 -3.4408 19 6 4.2326 -3.8925 -3.4690 20 6 5.1055 -4.0062 -4.5652 21 6 6.0913 -4.9461 -4.5229 22 7 6.2480 -5.7508 -3.4809 23 6 5.4716 -5.7025 -2.4238 24 6 4.4234 -4.7677 -2.3669 25 6 3.5694 -4.6791 -1.2598 26 1 -0.4850 -0.8367 -0.0751 27 1 -0.7308 -3.3935 2.9463 28 1 -0.2890 -5.5679 1.8885 29 1 1.2162 -5.7366 -0.0420 30 1 1.5710 -2.1547 -2.3470 31 1 3.0451 -2.2814 -4.2773 32 1 4.9971 -3.3608 -5.4243 33 1 6.7645 -5.0380 -5.3624 34 1 5.6381 -6.3795 -1.5989 35 1 3.7017 -5.3383 -0.4146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241678083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:31 Heat of formation + Delta-G solvation = 13.943085 kcal Electronic energy + Delta-G solvation = -22110.130685 eV Core-core repulsion = 18758.283383 eV Total energy + Delta-G solvation = -3351.847302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -47.38179 -40.40062 -38.16040 -36.39170 -34.09486 -32.78589 -31.46871 -29.99459 -29.51604 -28.00457 -25.30052 -23.95484 -23.18562 -22.02103 -21.11503 -20.60835 -18.16815 -17.54841 -16.88438 -16.19121 -15.54675 -15.12335 -14.94288 -14.65807 -14.17197 -14.12419 -13.96411 -13.91254 -13.35095 -13.19689 -13.03052 -12.49442 -12.37572 -11.91043 -11.53295 -11.42054 -11.30546 -10.98601 -10.89428 -10.75809 -10.53168 -10.37381 -9.86615 -9.65858 -9.25815 -9.09340 -8.64803 -8.04545 -7.64839 -7.42589 -7.30556 -4.68561 0.65781 1.23574 2.13056 2.46123 2.48632 3.08766 3.16550 3.27405 3.46982 3.90616 4.33647 4.44824 4.60205 4.84440 5.01608 5.10749 5.15437 5.27522 5.49157 5.55329 5.71525 5.72875 5.81408 5.84114 6.05359 6.10782 6.18557 6.27670 6.42723 6.45386 6.70061 6.83827 6.90652 7.00948 7.11700 7.17039 7.29490 7.51597 7.53915 7.56024 7.76343 7.96880 8.18029 8.42040 8.55524 9.87418 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.005636 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.663623 B = 4966.501637 C = 6267.559195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.039 3.961 3 Si 1.067 2.933 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.505 4.505 8 H 0.086 0.914 9 C 0.084 3.916 10 C -0.004 4.004 11 F -0.146 7.146 12 C -0.114 4.114 13 C -0.224 4.224 14 C -0.069 4.069 15 C -0.168 4.168 16 C 0.029 3.971 17 C -0.055 4.055 18 C -0.132 4.132 19 C -0.036 4.036 20 C -0.151 4.151 21 C 0.054 3.946 22 N -0.498 5.498 23 C 0.136 3.864 24 C -0.100 4.100 25 C -0.118 4.118 26 H 0.295 0.705 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.134 0.866 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 -4.809 -4.985 8.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.185 4.185 3 Si 0.891 3.109 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.531 4.531 8 H 0.104 0.896 9 C 0.080 3.920 10 C -0.024 4.024 11 F -0.125 7.125 12 C -0.134 4.134 13 C -0.244 4.244 14 C -0.087 4.087 15 C -0.170 4.170 16 C 0.029 3.971 17 C -0.075 4.075 18 C -0.150 4.150 19 C -0.041 4.041 20 C -0.171 4.171 21 C -0.089 4.089 22 N -0.206 5.206 23 C -0.035 4.035 24 C -0.102 4.102 25 C -0.138 4.138 26 H 0.107 0.893 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.152 0.848 31 H 0.142 0.858 32 H 0.148 0.852 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.166 -3.662 -5.092 8.125 hybrid contribution -0.704 -0.830 0.203 1.107 sum 4.462 -4.492 -4.889 7.999 Atomic orbital electron populations 1.70361 1.08182 1.33987 1.26682 1.27012 0.95502 1.04316 0.91664 0.83581 0.75554 0.73486 0.78308 1.19982 1.20201 1.19698 1.20454 1.02595 0.93223 1.36872 0.89602 1.17554 0.91051 0.93028 0.90322 1.17863 1.07105 0.80531 0.96923 1.91392 1.93328 1.44851 1.82891 1.20686 1.00075 0.92435 1.00167 1.20089 1.06920 0.95852 1.01510 1.20700 0.96364 0.96131 0.95528 1.18389 1.06514 0.93542 0.98521 1.18780 0.92945 0.92609 0.92811 1.21284 0.98194 0.96628 0.91346 1.20806 0.95763 0.98970 0.99439 1.18161 0.96136 0.96016 0.93809 1.21835 0.96464 1.00193 0.98592 1.21988 0.97385 0.93099 0.96425 1.67349 1.27622 1.24566 1.01064 1.23119 0.89821 0.95099 0.95427 1.18909 0.98089 0.97853 0.95386 1.21293 0.94885 1.00386 0.97237 0.89253 0.87792 0.87955 0.88168 0.84824 0.85751 0.85158 0.83806 0.82532 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.62 12.02 55.55 0.67 -18.96 16 2 C 0.04 0.94 4.36 -17.31 -0.08 0.87 16 3 Si 1.07 21.26 30.00 -169.99 -5.10 16.16 16 4 H -0.28 -5.28 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.50 -12.27 6.61 -37.94 -0.25 -12.52 16 8 H 0.09 2.09 7.26 -52.49 -0.38 1.71 16 9 C 0.08 2.03 5.02 -106.48 -0.53 1.50 16 10 C 0.00 -0.10 6.13 -38.71 -0.24 -0.34 16 11 F -0.15 -3.76 14.41 2.25 0.03 -3.72 16 12 C -0.11 -2.45 9.99 -39.55 -0.40 -2.84 16 13 C -0.22 -4.41 10.02 -39.41 -0.40 -4.81 16 14 C -0.07 -1.36 9.46 -39.30 -0.37 -1.73 16 15 C -0.17 -3.63 5.50 -104.27 -0.57 -4.20 16 16 C 0.03 0.56 4.96 -104.90 -0.52 0.04 16 17 C -0.06 -1.04 8.11 -39.53 -0.32 -1.36 16 18 C -0.13 -2.15 9.77 -39.62 -0.39 -2.54 16 19 C -0.04 -0.59 5.75 -106.73 -0.61 -1.20 16 20 C -0.15 -2.08 9.87 -39.40 -0.39 -2.47 16 21 C 0.05 0.74 11.07 -17.93 -0.20 0.54 16 22 N -0.50 -7.61 10.30 -13.10 -0.13 -7.74 16 23 C 0.14 2.03 11.05 -16.92 -0.19 1.84 16 24 C -0.10 -1.65 5.74 -106.87 -0.61 -2.26 16 25 C -0.12 -2.04 9.27 -38.72 -0.36 -2.40 16 26 H 0.29 7.70 7.01 -40.82 -0.29 7.41 16 27 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.10 1.73 8.06 -52.48 -0.42 1.30 16 29 H 0.10 1.72 8.02 -52.49 -0.42 1.30 16 30 H 0.13 2.67 7.29 -52.49 -0.38 2.28 16 31 H 0.12 1.71 8.06 -52.48 -0.42 1.28 16 32 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.13 1.98 8.02 -52.49 -0.42 1.55 16 LS Contribution 306.66 15.07 4.62 4.62 Total: -1.00 -26.76 306.66 -9.56 -36.32 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -3.22 Total: 7.22 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: -6.42 Total: -33.89 kcal Atomic # 7 Polarization: -27.23 SS G_CDS: 0.53 Total: -26.70 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.03 Total: -3.72 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.10 Total: 16.16 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.76 -9.56 -36.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241678083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.259 kcal (2) G-P(sol) polarization free energy of solvation -26.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds