Wall clock time and date at job start Tue Mar 31 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86794 * 120.00081 * 2 1 4 4 H 1.48506 * 109.46972 * 179.72401 * 3 2 1 5 5 H 1.48500 * 109.47368 * 299.72046 * 3 2 1 6 6 H 1.48494 * 109.47521 * 59.72395 * 3 2 1 7 7 C 1.40075 * 119.99861 * 179.72255 * 2 1 3 8 8 H 1.07998 * 120.00369 * 156.02249 * 7 2 1 9 9 C 1.40762 * 119.99942 * 336.02179 * 7 2 1 10 10 C 1.41046 * 120.35064 * 323.40743 * 9 7 2 11 11 F 1.35098 * 120.09493 * 359.97438 * 10 9 7 12 12 C 1.37715 * 119.80021 * 179.78898 * 10 9 7 13 13 C 1.38830 * 120.53328 * 0.46705 * 12 10 9 14 14 C 1.38108 * 120.72456 * 359.78534 * 13 12 10 15 15 C 1.39115 * 120.17097 * 359.97438 * 14 13 12 16 16 C 1.47796 * 120.26537 * 180.02562 * 15 14 13 17 17 C 1.40683 * 119.70892 * 129.70239 * 16 15 14 18 18 C 1.35809 * 120.87720 * 179.74976 * 17 16 15 19 19 C 1.40446 * 119.85510 * 0.52115 * 18 17 16 20 20 C 1.40600 * 121.97270 * 179.71607 * 19 18 17 21 21 C 1.36267 * 118.73306 * 180.02562 * 20 19 18 22 22 N 1.32592 * 121.90596 * 359.97295 * 21 20 19 23 23 C 1.31244 * 122.73303 * 0.05383 * 22 21 20 24 24 C 1.40571 * 119.88115 * 359.94753 * 23 22 21 25 25 C 1.38686 * 119.70829 * 309.97285 * 16 15 14 26 26 H 0.97006 * 120.00131 * 174.87446 * 1 2 3 27 27 H 1.07998 * 119.73204 * 180.22893 * 12 10 9 28 28 H 1.08005 * 119.64170 * 179.76072 * 13 12 10 29 29 H 1.07996 * 119.91873 * 179.97438 * 14 13 12 30 30 H 1.07999 * 119.56265 * 0.02562 * 17 16 15 31 31 H 1.08007 * 120.07417 * 180.25327 * 18 17 16 32 32 H 1.07991 * 120.63332 * 0.04316 * 20 19 18 33 33 H 1.08001 * 119.04365 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.05910 * 179.97438 * 23 22 21 35 35 H 1.07998 * 120.34328 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.7019 1.3463 0.0067 5 1 1.8883 2.3935 -1.2159 6 1 1.8782 2.3993 1.2090 7 6 2.0082 -1.2131 0.0059 8 1 3.0183 -1.2554 -0.3740 9 6 1.3955 -2.3771 0.5069 10 6 0.5308 -2.3051 1.6189 11 9 0.2860 -1.1156 2.2108 12 6 -0.0660 -3.4504 2.0971 13 6 0.1838 -4.6783 1.4993 14 6 1.0307 -4.7747 0.4127 15 6 1.6456 -3.6360 -0.0978 16 6 2.5519 -3.7368 -1.2609 17 6 2.3712 -2.8798 -2.3619 18 6 3.1931 -2.9484 -3.4408 19 6 4.2326 -3.8925 -3.4690 20 6 5.1055 -4.0062 -4.5652 21 6 6.0913 -4.9461 -4.5229 22 7 6.2480 -5.7508 -3.4809 23 6 5.4716 -5.7025 -2.4238 24 6 4.4234 -4.7677 -2.3669 25 6 3.5694 -4.6791 -1.2598 26 1 -0.4850 -0.8367 -0.0751 27 1 -0.7308 -3.3935 2.9463 28 1 -0.2890 -5.5679 1.8885 29 1 1.2162 -5.7366 -0.0420 30 1 1.5710 -2.1547 -2.3470 31 1 3.0451 -2.2814 -4.2773 32 1 4.9971 -3.3608 -5.4243 33 1 6.7645 -5.0380 -5.3624 34 1 5.6381 -6.3795 -1.5989 35 1 3.7017 -5.3383 -0.4146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241678083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:30 Heat of formation + Delta-G solvation = 2.631992 kcal Electronic energy + Delta-G solvation = -22110.621171 eV Core-core repulsion = 18758.283383 eV Total energy + Delta-G solvation = -3352.337787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.25830 -41.62875 -39.70490 -37.77112 -35.82588 -34.05859 -32.85645 -31.31715 -31.19785 -29.44160 -27.01831 -25.24169 -24.53576 -23.34794 -22.72743 -22.15015 -19.90638 -18.84936 -18.26996 -17.47561 -17.11373 -16.75823 -16.60306 -16.01728 -15.86161 -15.72775 -15.31704 -15.12069 -14.77286 -14.57545 -14.39465 -14.18647 -13.86592 -13.48774 -12.96820 -12.94776 -12.73401 -12.57363 -12.46827 -12.20084 -12.06936 -11.91442 -11.33423 -11.08007 -10.82142 -10.43185 -10.05243 -9.59187 -9.31655 -9.20353 -8.73307 -6.49823 -0.56025 -0.08066 0.63682 0.76955 1.08419 1.44994 1.56780 1.71237 2.18026 2.27355 2.64824 3.15083 3.32600 3.56611 3.68420 3.82352 3.89464 3.98640 4.05703 4.22202 4.27683 4.33280 4.47751 4.54020 4.68572 4.75062 4.87997 4.94493 4.99958 5.10503 5.16996 5.40045 5.44267 5.57355 5.60065 5.71776 5.74908 5.78402 5.88463 5.96224 6.06615 6.24574 6.66802 6.81024 7.05140 8.03267 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.005636 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.663623 B = 4966.501637 C = 6267.559195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.009 3.991 3 Si 1.106 2.894 4 H -0.265 1.265 5 H -0.262 1.262 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.058 3.942 10 C -0.043 4.043 11 F -0.164 7.164 12 C -0.122 4.122 13 C -0.207 4.207 14 C -0.076 4.076 15 C -0.161 4.161 16 C -0.006 4.006 17 C -0.076 4.076 18 C -0.123 4.123 19 C -0.048 4.048 20 C -0.151 4.151 21 C 0.056 3.944 22 N -0.511 5.511 23 C 0.138 3.862 24 C -0.117 4.117 25 C -0.103 4.103 26 H 0.277 0.723 27 H 0.122 0.878 28 H 0.141 0.859 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.148 0.852 32 H 0.162 0.838 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 -6.931 -6.346 11.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.209 4.209 3 Si 0.925 3.075 4 H -0.190 1.190 5 H -0.186 1.186 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.092 0.908 9 C 0.055 3.945 10 C -0.063 4.063 11 F -0.143 7.143 12 C -0.141 4.141 13 C -0.226 4.226 14 C -0.094 4.094 15 C -0.163 4.163 16 C -0.006 4.006 17 C -0.095 4.095 18 C -0.141 4.141 19 C -0.053 4.053 20 C -0.170 4.170 21 C -0.086 4.086 22 N -0.219 5.219 23 C -0.032 4.032 24 C -0.119 4.119 25 C -0.123 4.123 26 H 0.088 0.912 27 H 0.140 0.860 28 H 0.159 0.841 29 H 0.151 0.849 30 H 0.126 0.874 31 H 0.166 0.834 32 H 0.179 0.821 33 H 0.195 0.805 34 H 0.201 0.799 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.015 -5.803 -6.460 11.163 hybrid contribution -1.142 -0.498 0.514 1.348 sum 5.872 -6.301 -5.946 10.466 Atomic orbital electron populations 1.70468 1.08886 1.32652 1.30521 1.28075 0.95508 1.06945 0.90380 0.83123 0.75055 0.70688 0.78662 1.18951 1.18644 1.19917 1.20340 1.02269 0.94067 1.39020 0.90787 1.17899 0.91687 0.94278 0.90633 1.18298 1.09084 0.80863 0.98040 1.91326 1.93634 1.46089 1.83228 1.21004 1.00067 0.92241 1.00795 1.20596 1.05287 0.96314 1.00361 1.21111 0.95746 0.96942 0.95566 1.18801 1.05803 0.93187 0.98489 1.18779 0.94434 0.94663 0.92690 1.21105 0.98813 0.96908 0.92671 1.21027 0.94912 0.98993 0.99139 1.18475 0.96364 0.95743 0.94763 1.22151 0.95585 1.00578 0.98667 1.22592 0.97364 0.91974 0.96713 1.67457 1.27734 1.25118 1.01564 1.23513 0.88819 0.94791 0.96118 1.19108 0.98695 0.98776 0.95343 1.21434 0.93794 0.99136 0.97892 0.91157 0.85955 0.84127 0.84936 0.87417 0.83385 0.82085 0.80502 0.79927 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.43 12.02 21.85 0.26 -43.17 16 2 C 0.01 0.44 4.36 85.29 0.37 0.81 16 3 Si 1.11 44.46 30.00 68.60 2.06 46.51 16 4 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 7 C -0.53 -27.20 6.61 23.33 0.15 -27.04 16 8 H 0.07 3.83 7.26 -2.91 -0.02 3.81 16 9 C 0.06 2.94 5.02 -21.07 -0.11 2.83 16 10 C -0.04 -2.16 6.13 22.83 0.14 -2.02 16 11 F -0.16 -8.91 14.41 44.97 0.65 -8.26 16 12 C -0.12 -5.21 9.99 22.29 0.22 -4.99 16 13 C -0.21 -7.68 10.02 22.38 0.22 -7.46 16 14 C -0.08 -2.86 9.46 22.45 0.21 -2.65 16 15 C -0.16 -7.04 5.50 -19.64 -0.11 -7.14 16 16 C -0.01 -0.22 4.96 -20.05 -0.10 -0.32 16 17 C -0.08 -2.91 8.11 22.30 0.18 -2.73 16 18 C -0.12 -3.91 9.77 22.24 0.22 -3.70 16 19 C -0.05 -1.46 5.75 -21.23 -0.12 -1.58 16 20 C -0.15 -3.59 9.87 22.39 0.22 -3.37 16 21 C 0.06 1.31 11.07 84.12 0.93 2.24 16 22 N -0.51 -13.76 10.30 -195.35 -2.01 -15.78 16 23 C 0.14 3.67 11.05 85.35 0.94 4.62 16 24 C -0.12 -3.59 5.74 -21.32 -0.12 -3.72 16 25 C -0.10 -3.40 9.27 22.83 0.21 -3.19 16 26 H 0.28 15.59 7.01 -92.70 -0.65 14.94 16 27 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 28 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 29 H 0.13 4.13 8.02 -2.91 -0.02 4.10 16 30 H 0.11 4.63 7.29 -2.91 -0.02 4.61 16 31 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.16 2.80 8.06 -2.92 -0.02 2.77 16 33 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 34 H 0.18 3.71 8.06 -2.91 -0.02 3.68 16 35 H 0.14 4.13 8.02 -2.91 -0.02 4.10 16 Total: -1.00 -61.01 306.66 5.67 -55.34 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 1.24 Total: 24.75 kcal Atomic # 6 Polarization: -62.88 SS G_CDS: 3.47 Total: -59.40 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -1.75 Total: -58.94 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 0.65 Total: -8.26 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.06 Total: 46.51 kcal Total: -61.01 5.67 -55.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241678083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.975 kcal (2) G-P(sol) polarization free energy of solvation -61.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds