Wall clock time and date at job start Tue Mar 31 2020 06:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30773 * 1 3 3 Si 1.86792 * 120.00209 * 2 1 4 4 H 1.48501 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47095 * 299.99961 * 3 2 1 6 6 H 1.48495 * 109.47371 * 59.99883 * 3 2 1 7 7 C 1.40098 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00234 * 160.07576 * 7 2 1 9 9 C 1.40764 * 119.99982 * 340.07699 * 7 2 1 10 10 C 1.41039 * 120.35001 * 323.32758 * 9 7 2 11 11 F 1.35102 * 120.10033 * 0.02562 * 10 9 7 12 12 C 1.37737 * 119.80152 * 180.02562 * 10 9 7 13 13 C 1.38817 * 120.52756 * 359.97438 * 12 10 9 14 14 C 1.38131 * 120.72140 * 359.97438 * 13 12 10 15 15 C 1.39090 * 120.17576 * 0.02562 * 14 13 12 16 16 C 1.47822 * 120.26514 * 179.97438 * 15 14 13 17 17 C 1.40675 * 119.73579 * 129.72788 * 16 15 14 18 18 C 1.35771 * 120.94330 * 179.70786 * 17 16 15 19 19 C 1.40577 * 119.88558 * 0.56489 * 18 17 16 20 20 C 1.40348 * 121.82286 * 179.70177 * 19 18 17 21 21 N 1.31280 * 119.95737 * 180.02562 * 20 19 18 22 22 C 1.32584 * 122.80657 * 359.97438 * 21 20 19 23 23 C 1.36195 * 121.83568 * 359.97438 * 22 21 20 24 24 C 1.40822 * 118.66527 * 0.02562 * 23 22 21 25 25 C 1.38702 * 119.73610 * 310.00069 * 16 15 14 26 26 H 0.97000 * 119.99408 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.74100 * 180.02562 * 12 10 9 28 28 H 1.08000 * 119.64079 * 180.28231 * 13 12 10 29 29 H 1.07999 * 119.91016 * 179.97438 * 14 13 12 30 30 H 1.08002 * 119.52399 * 0.02562 * 17 16 15 31 31 H 1.07996 * 120.05789 * 180.28369 * 18 17 16 32 32 H 1.07995 * 120.02354 * 0.04134 * 20 19 18 33 33 H 1.07996 * 119.08602 * 180.02562 * 22 21 20 34 34 H 1.08000 * 120.66452 * 179.97438 * 23 22 21 35 35 H 1.07997 * 120.36918 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2417 1.6176 0.0000 4 1 3.7017 1.3462 -0.0006 5 1 1.8830 2.3963 -1.2125 6 1 1.8831 2.3964 1.2124 7 6 2.0082 -1.2133 0.0005 8 1 3.0397 -1.2415 -0.3182 9 6 1.3675 -2.3957 0.4165 10 6 0.4376 -2.3673 1.4765 11 9 0.1557 -1.2021 2.0995 12 6 -0.1823 -3.5311 1.8746 13 6 0.1002 -4.7331 1.2403 14 6 1.0065 -4.7857 0.1992 15 6 1.6496 -3.6284 -0.2269 16 6 2.6202 -3.6824 -1.3406 17 6 2.5032 -2.7790 -2.4126 18 6 3.3845 -2.8031 -3.4451 19 6 4.4246 -3.7487 -3.4564 20 6 5.3542 -3.8139 -4.5059 21 7 6.3110 -4.7123 -4.4793 22 6 6.4510 -5.5835 -3.4897 23 6 5.6027 -5.6032 -2.4244 24 6 4.5501 -4.6687 -2.3818 25 6 3.6356 -4.6271 -1.3229 26 1 -0.4849 0.8401 0.0004 27 1 -0.8946 -3.5082 2.6862 28 1 -0.3976 -5.6363 1.5612 29 1 1.2168 -5.7280 -0.2847 30 1 1.7039 -2.0527 -2.4117 31 1 3.2839 -2.0999 -4.2586 32 1 5.2826 -3.1252 -5.3347 33 1 7.2609 -6.2969 -3.5290 34 1 5.7341 -6.3216 -1.6288 35 1 3.7202 -5.3225 -0.5010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242245038.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:34 Heat of formation + Delta-G solvation = 21.064424 kcal Electronic energy + Delta-G solvation = -22065.075376 eV Core-core repulsion = 18713.536879 eV Total energy + Delta-G solvation = -3351.538497 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.12390 -40.33556 -38.02922 -36.27485 -33.87727 -32.62547 -31.71544 -29.83261 -29.38887 -28.17463 -25.51842 -23.86628 -23.07553 -21.97165 -20.99867 -20.42530 -17.65961 -17.44292 -16.79505 -16.17423 -15.58502 -15.36908 -14.67322 -14.54781 -14.36090 -13.90765 -13.83377 -13.75185 -13.28439 -13.11760 -12.89113 -12.23800 -12.20558 -11.79729 -11.65038 -11.47081 -11.30799 -11.16649 -10.81830 -10.75421 -10.53836 -10.31883 -9.84555 -9.67393 -9.25166 -9.19328 -8.56485 -7.83463 -7.44858 -7.29440 -7.00593 -4.60728 0.72224 1.28614 2.26366 2.52410 2.60446 2.99899 3.03793 3.06256 3.54185 3.82046 4.38709 4.50118 4.64006 4.90847 5.15429 5.17785 5.19459 5.37921 5.56604 5.64308 5.82744 5.84684 5.90498 5.93258 6.08514 6.14818 6.29572 6.40739 6.52321 6.60272 6.77895 6.90290 6.95976 6.96713 7.10144 7.28140 7.32375 7.44142 7.63017 7.67645 7.93817 8.21345 8.23228 8.53243 8.63687 9.96615 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.005651 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.216383 B = 4953.727604 C = 6286.924981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.080 3.920 3 Si 0.904 3.096 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.455 4.455 8 H 0.088 0.912 9 C 0.107 3.893 10 C 0.042 3.958 11 F -0.142 7.142 12 C -0.130 4.130 13 C -0.214 4.214 14 C -0.078 4.078 15 C -0.167 4.167 16 C 0.052 3.948 17 C -0.076 4.076 18 C -0.109 4.109 19 C -0.122 4.122 20 C 0.142 3.858 21 N -0.506 5.506 22 C 0.062 3.938 23 C -0.159 4.159 24 C -0.016 4.016 25 C -0.144 4.144 26 H 0.286 0.714 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.138 0.862 31 H 0.126 0.874 32 H 0.156 0.844 33 H 0.144 0.856 34 H 0.131 0.869 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.514 -4.628 -3.736 7.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.142 4.142 3 Si 0.728 3.272 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.482 4.482 8 H 0.106 0.894 9 C 0.104 3.896 10 C 0.022 3.978 11 F -0.121 7.121 12 C -0.149 4.149 13 C -0.234 4.234 14 C -0.096 4.096 15 C -0.169 4.169 16 C 0.050 3.950 17 C -0.094 4.094 18 C -0.129 4.129 19 C -0.124 4.124 20 C -0.029 4.029 21 N -0.215 5.215 22 C -0.081 4.081 23 C -0.179 4.179 24 C -0.021 4.021 25 C -0.162 4.162 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.156 0.844 31 H 0.144 0.856 32 H 0.173 0.827 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.965 -4.576 -4.349 8.032 hybrid contribution -0.502 1.018 0.973 1.495 sum 4.464 -3.558 -3.376 6.632 Atomic orbital electron populations 1.69727 1.07862 1.30253 1.31077 1.25852 0.94618 1.01344 0.92404 0.86288 0.81217 0.80858 0.78819 1.18140 1.19756 1.19436 1.19390 0.99244 0.90953 1.38646 0.89360 1.17446 0.90264 0.92391 0.89513 1.17776 1.03434 0.80526 0.96046 1.91343 1.92559 1.47349 1.80823 1.20687 1.00589 0.92617 1.01021 1.20089 1.05239 0.96212 1.01829 1.20643 0.96703 0.95915 0.96335 1.18422 1.04975 0.93915 0.99579 1.18879 0.92089 0.91610 0.92407 1.21296 0.98760 0.97487 0.91809 1.20818 0.94656 0.98094 0.99363 1.18986 0.98611 0.98380 0.96418 1.23049 0.89105 0.94653 0.96094 1.67341 1.22123 1.04918 1.27082 1.21970 0.98752 0.97074 0.90342 1.21864 0.96163 0.99754 1.00086 1.18072 0.95157 0.94632 0.94256 1.21266 0.95287 1.01409 0.98274 0.90253 0.87959 0.88116 0.88345 0.84437 0.85623 0.82703 0.83856 0.85154 0.85679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.95 11.12 55.56 0.62 -18.33 16 2 C 0.08 1.89 4.51 -17.31 -0.08 1.82 16 3 Si 0.90 18.13 29.60 -169.99 -5.03 13.09 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.88 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.45 -11.06 6.63 -37.93 -0.25 -11.31 16 8 H 0.09 2.13 7.25 -52.49 -0.38 1.75 16 9 C 0.11 2.62 5.39 -106.49 -0.57 2.05 16 10 C 0.04 1.05 6.68 -38.70 -0.26 0.79 16 11 F -0.14 -3.66 14.27 2.25 0.03 -3.63 16 12 C -0.13 -2.83 9.99 -39.55 -0.40 -3.23 16 13 C -0.21 -4.30 10.02 -39.41 -0.40 -4.69 16 14 C -0.08 -1.57 9.46 -39.30 -0.37 -1.94 16 15 C -0.17 -3.67 5.50 -104.27 -0.57 -4.24 16 16 C 0.05 1.02 4.96 -104.89 -0.52 0.50 16 17 C -0.08 -1.42 8.11 -39.55 -0.32 -1.74 16 18 C -0.11 -1.77 9.77 -39.58 -0.39 -2.16 16 19 C -0.12 -1.98 5.75 -106.78 -0.61 -2.60 16 20 C 0.14 2.07 11.04 -16.99 -0.19 1.89 16 21 N -0.51 -7.77 10.30 -13.17 -0.14 -7.91 16 22 C 0.06 0.86 11.07 -17.96 -0.20 0.66 16 23 C -0.16 -2.28 9.88 -39.34 -0.39 -2.67 16 24 C -0.02 -0.27 5.74 -106.82 -0.61 -0.88 16 25 C -0.14 -2.55 9.28 -38.76 -0.36 -2.91 16 26 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 27 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 28 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.10 1.74 8.02 -52.49 -0.42 1.32 16 30 H 0.14 2.76 7.29 -52.49 -0.38 2.38 16 31 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.13 2.04 8.02 -52.49 -0.42 1.62 16 LS Contribution 307.62 15.07 4.64 4.64 Total: -1.00 -26.88 307.62 -9.65 -36.53 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.28 Total: 6.28 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: -6.49 Total: -30.67 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 0.48 Total: -26.24 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.03 Total: -3.63 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.88 -9.65 -36.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242245038.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.594 kcal (2) G-P(sol) polarization free energy of solvation -26.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds