Wall clock time and date at job start Tue Mar 31 2020 06:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30772 * 1 3 3 Si 1.86801 * 120.00255 * 2 1 4 4 H 1.48498 * 109.47094 * 88.83334 * 3 2 1 5 5 H 1.48500 * 109.47249 * 208.83764 * 3 2 1 6 6 H 1.48504 * 109.46830 * 328.83485 * 3 2 1 7 7 C 1.40103 * 119.99864 * 180.26857 * 2 1 3 8 8 H 1.07997 * 120.00105 * 330.44780 * 7 2 1 9 9 C 1.40766 * 119.99684 * 150.44865 * 7 2 1 10 10 C 1.41036 * 120.34807 * 324.70648 * 9 7 2 11 11 F 1.35102 * 120.10533 * 0.02562 * 10 9 7 12 12 C 1.37739 * 119.79725 * 179.97438 * 10 9 7 13 13 C 1.38817 * 120.52746 * 0.02562 * 12 10 9 14 14 C 1.38128 * 120.72259 * 359.97438 * 13 12 10 15 15 C 1.39096 * 120.17597 * 359.73693 * 14 13 12 16 16 C 1.47815 * 120.26622 * 180.25526 * 15 14 13 17 17 C 1.40661 * 119.71049 * 130.28111 * 16 15 14 18 18 C 1.35737 * 120.72248 * 180.02562 * 17 16 15 19 19 C 1.40632 * 119.99479 * 0.02562 * 18 17 16 20 20 C 1.40687 * 121.13032 * 179.97438 * 19 18 17 21 21 C 1.36656 * 118.21705 * 180.02562 * 20 19 18 22 22 C 1.39324 * 119.95246 * 359.97438 * 21 20 19 23 23 N 1.31084 * 121.70714 * 0.02562 * 22 21 20 24 24 C 1.33786 * 121.33405 * 359.95557 * 23 22 21 25 25 C 1.38569 * 119.71433 * 310.01429 * 16 15 14 26 26 H 0.96996 * 119.99873 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.73446 * 179.97438 * 12 10 9 28 28 H 1.08008 * 119.63522 * 179.97438 * 13 12 10 29 29 H 1.08003 * 119.91047 * 180.02562 * 14 13 12 30 30 H 1.07997 * 119.63942 * 0.02562 * 17 16 15 31 31 H 1.08003 * 120.00307 * 179.97438 * 18 17 16 32 32 H 1.08000 * 120.89632 * 359.97438 * 20 19 18 33 33 H 1.07999 * 120.02411 * 180.02562 * 21 20 19 34 34 H 1.08000 * 119.14613 * 180.02562 * 22 21 20 35 35 H 1.08004 * 120.22987 * 359.97349 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.4646 2.0606 1.3998 5 1 3.5514 1.4331 -0.6753 6 1 1.4518 2.6454 -0.7246 7 6 2.0082 -1.2133 -0.0057 8 1 1.5736 -2.0899 0.4515 9 6 3.2785 -1.2898 -0.6073 10 6 3.5652 -0.5367 -1.7649 11 9 2.6201 0.2644 -2.3035 12 6 4.8122 -0.6197 -2.3439 13 6 5.7902 -1.4396 -1.7977 14 6 5.5328 -2.1864 -0.6646 15 6 4.2857 -2.1206 -0.0521 16 6 4.0100 -2.9146 1.1638 17 6 3.4432 -2.2910 2.2900 18 6 3.1819 -3.0003 3.4174 19 6 3.4786 -4.3741 3.4683 20 6 3.2183 -5.1321 4.6246 21 6 3.5306 -6.4624 4.6089 22 6 4.0906 -7.0321 3.4675 23 7 4.3322 -6.3235 2.3914 24 6 4.0498 -5.0168 2.3410 25 6 4.3069 -4.2680 1.1823 26 1 -0.4850 0.8400 -0.0004 27 1 5.0306 -0.0430 -3.2306 28 1 6.7630 -1.4940 -2.2638 29 1 6.3035 -2.8196 -0.2504 30 1 3.2134 -1.2362 2.2574 31 1 2.7470 -2.5096 4.2756 32 1 2.7840 -4.6748 5.5013 33 1 3.3426 -7.0718 5.4805 34 1 4.3320 -8.0848 3.4693 35 1 4.7376 -4.7421 0.3127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242249748.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:26 Heat of formation + Delta-G solvation = 12.912411 kcal Electronic energy + Delta-G solvation = -22132.308991 eV Core-core repulsion = 18780.416996 eV Total energy + Delta-G solvation = -3351.891995 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.091 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.60489 -41.59943 -39.66273 -37.51895 -35.66271 -34.40750 -32.92348 -31.94128 -30.95553 -29.66264 -27.21533 -25.25795 -24.43105 -23.28376 -22.55237 -22.08667 -19.78811 -19.00799 -18.10603 -17.67343 -17.51212 -17.07936 -16.69947 -16.26933 -15.86898 -15.34083 -15.27541 -15.23257 -14.90182 -14.73827 -14.22422 -13.97786 -13.80648 -13.65374 -13.26509 -13.05403 -12.71804 -12.59160 -12.43031 -12.27746 -12.02396 -11.83997 -11.43950 -11.35564 -11.09282 -10.36541 -9.87055 -9.48725 -9.28704 -9.01036 -8.89579 -6.48414 -0.48263 -0.10156 0.63936 0.64923 1.17312 1.26291 1.36806 1.39174 2.10019 2.12411 2.48736 3.17434 3.27823 3.48931 3.74130 3.82992 3.97087 4.04061 4.13018 4.23583 4.27303 4.36478 4.51747 4.59846 4.65835 4.69825 4.88752 4.95986 5.07541 5.14083 5.24049 5.24506 5.43811 5.55757 5.57325 5.60519 5.70210 5.80766 5.92487 6.04717 6.11707 6.28328 6.61993 6.71027 7.05895 8.02823 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019917 B = 0.005402 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.484905 B = 5182.181121 C = 6123.786171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.068 3.932 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.251 1.251 6 H -0.271 1.271 7 C -0.471 4.471 8 H 0.066 0.934 9 C 0.063 3.937 10 C -0.043 4.043 11 F -0.161 7.161 12 C -0.111 4.111 13 C -0.201 4.201 14 C -0.071 4.071 15 C -0.159 4.159 16 C 0.017 3.983 17 C -0.098 4.098 18 C -0.104 4.104 19 C -0.126 4.126 20 C -0.058 4.058 21 C -0.178 4.178 22 C 0.122 3.878 23 N -0.512 5.512 24 C 0.109 3.891 25 C -0.124 4.124 26 H 0.295 0.705 27 H 0.133 0.867 28 H 0.146 0.854 29 H 0.130 0.870 30 H 0.118 0.882 31 H 0.153 0.847 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.189 0.811 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.601 -6.518 8.818 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.152 4.152 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.175 1.175 6 H -0.196 1.196 7 C -0.498 4.498 8 H 0.084 0.916 9 C 0.060 3.940 10 C -0.063 4.063 11 F -0.140 7.140 12 C -0.130 4.130 13 C -0.220 4.220 14 C -0.089 4.089 15 C -0.160 4.160 16 C 0.015 3.985 17 C -0.116 4.116 18 C -0.122 4.122 19 C -0.128 4.128 20 C -0.084 4.084 21 C -0.197 4.197 22 C -0.051 4.051 23 N -0.221 5.221 24 C -0.011 4.011 25 C -0.143 4.143 26 H 0.106 0.894 27 H 0.151 0.849 28 H 0.164 0.836 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.170 0.830 32 H 0.184 0.816 33 H 0.194 0.806 34 H 0.206 0.794 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.632 -6.701 7.990 12.922 hybrid contribution -0.941 1.385 0.178 1.684 sum 6.690 -5.316 8.168 11.821 Atomic orbital electron populations 1.69774 1.09484 1.31781 1.32909 1.26779 0.94918 1.03947 0.89568 0.85689 0.81510 0.77080 0.78145 1.20015 1.17518 1.19632 1.19020 0.99237 0.97243 1.34305 0.91550 1.17735 0.93100 0.92347 0.90859 1.18002 0.88324 1.02488 0.97491 1.91017 1.65323 1.72090 1.85606 1.21047 0.91487 1.00133 1.00335 1.20654 0.99843 1.02049 0.99435 1.21131 0.95112 0.97706 0.94947 1.18743 0.94059 1.05854 0.97368 1.18722 0.94735 0.92203 0.92807 1.21122 0.97183 1.00828 0.92517 1.21116 0.99730 0.92609 0.98763 1.19106 1.02278 0.95451 0.95995 1.21849 0.95331 0.94555 0.96678 1.22253 1.00706 0.95816 1.00923 1.23613 0.92416 1.01158 0.87914 1.68046 1.18901 1.05978 1.29207 1.18862 0.97879 0.90555 0.93792 1.21098 1.03551 0.92291 0.97367 0.89398 0.84939 0.83622 0.85195 0.86379 0.82982 0.81606 0.80619 0.79405 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.09 13.93 21.86 0.30 -43.79 16 2 C 0.07 3.57 4.72 85.30 0.40 3.97 16 3 Si 0.95 43.37 25.42 68.60 1.74 45.12 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.25 -11.69 5.30 99.48 0.53 -11.16 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.47 -25.54 7.12 23.34 0.17 -25.37 16 8 H 0.07 3.92 7.30 -2.91 -0.02 3.90 16 9 C 0.06 3.16 4.86 -21.07 -0.10 3.06 16 10 C -0.04 -2.09 5.02 22.84 0.11 -1.98 16 11 F -0.16 -8.13 12.82 44.97 0.58 -7.55 16 12 C -0.11 -4.50 9.99 22.29 0.22 -4.27 16 13 C -0.20 -7.23 10.02 22.38 0.22 -7.01 16 14 C -0.07 -2.71 9.46 22.45 0.21 -2.50 16 15 C -0.16 -7.09 5.50 -19.64 -0.11 -7.20 16 16 C 0.02 0.72 4.96 -20.07 -0.10 0.62 16 17 C -0.10 -3.94 8.08 22.28 0.18 -3.76 16 18 C -0.10 -3.45 9.73 22.27 0.22 -3.23 16 19 C -0.13 -4.06 5.75 -21.22 -0.12 -4.18 16 20 C -0.06 -1.34 9.88 22.50 0.22 -1.12 16 21 C -0.18 -3.36 10.03 22.16 0.22 -3.14 16 22 C 0.12 2.81 11.15 85.07 0.95 3.76 16 23 N -0.51 -16.80 10.34 -188.70 -1.95 -18.75 16 24 C 0.11 3.96 6.60 40.23 0.27 4.22 16 25 C -0.12 -4.91 9.45 22.86 0.22 -4.69 16 26 H 0.30 14.41 8.29 -92.71 -0.77 13.65 16 27 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 28 H 0.15 4.08 8.06 -2.91 -0.02 4.06 16 29 H 0.13 4.26 8.02 -2.91 -0.02 4.23 16 30 H 0.12 4.99 7.27 -2.91 -0.02 4.97 16 31 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.19 2.78 8.06 -2.91 -0.02 2.75 16 35 H 0.13 4.86 8.02 -2.91 -0.02 4.84 16 Total: -1.00 -64.73 301.60 4.80 -59.93 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.94 Total: 17.85 kcal Atomic # 6 Polarization: -56.00 SS G_CDS: 3.18 Total: -52.81 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: -1.65 Total: -62.54 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 0.58 Total: -7.55 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.74 Total: 45.12 kcal Total: -64.73 4.80 -59.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242249748.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.842 kcal (2) G-P(sol) polarization free energy of solvation -64.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds