Wall clock time and date at job start Tue Mar 31 2020 06:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30688 * 1 3 3 Si 1.86807 * 119.99763 * 2 1 4 4 H 1.48496 * 109.47012 * 264.70675 * 3 2 1 5 5 H 1.48502 * 109.47034 * 24.70925 * 3 2 1 6 6 H 1.48500 * 109.46930 * 144.70852 * 3 2 1 7 7 C 1.40152 * 120.00411 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99832 * 350.73847 * 7 2 1 9 9 C 1.40747 * 120.00373 * 170.73813 * 7 2 1 10 10 N 1.33985 * 120.29045 * 342.61716 * 9 7 2 11 11 C 1.31600 * 119.90261 * 179.97438 * 10 9 7 12 12 C 1.39209 * 120.51378 * 359.97438 * 11 10 9 13 13 N 1.31989 * 120.59491 * 0.02562 * 12 11 10 14 14 C 1.32897 * 120.07953 * 0.02562 * 13 12 11 15 15 C 1.47698 * 120.25536 * 179.97438 * 14 13 12 16 16 C 1.40268 * 119.95362 * 135.87715 * 15 14 13 17 17 C 1.36361 * 120.67797 * 180.02562 * 16 15 14 18 18 C 1.39372 * 120.23873 * 359.97438 * 17 16 15 19 19 N 1.37691 * 120.74528 * 179.97438 * 18 17 16 20 20 H 0.96996 * 119.48058 * 0.02562 * 19 18 17 21 21 C 1.34410 * 121.03602 * 180.02562 * 19 18 17 22 22 O 1.21875 * 119.14554 * 180.02562 * 21 19 18 23 23 C 1.41160 * 121.70257 * 0.02562 * 21 19 18 24 24 C 1.35570 * 120.20346 * 359.97438 * 23 21 19 25 25 C 1.40949 * 119.71910 * 359.97438 * 18 17 16 26 26 C 1.39211 * 119.95564 * 315.59762 * 15 14 13 27 27 H 0.97006 * 120.00693 * 0.02562 * 1 2 3 28 28 H 1.07997 * 119.74276 * 180.27147 * 11 10 9 29 29 H 1.08000 * 119.69897 * 179.97438 * 12 11 10 30 30 H 1.07994 * 119.66161 * 359.97373 * 16 15 14 31 31 H 1.08007 * 119.87873 * 179.97438 * 17 16 15 32 32 H 1.08007 * 119.89905 * 179.97438 * 23 21 19 33 33 H 1.07998 * 120.75172 * 180.02562 * 24 23 21 34 34 H 1.08011 * 120.32051 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.6002 1.9819 -1.3941 5 1 1.3868 2.6824 0.5853 6 1 3.4780 1.4751 0.8089 7 6 2.0077 -1.2137 -0.0005 8 1 1.4783 -2.1430 0.1496 9 6 3.4014 -1.2215 -0.1967 10 7 4.0162 -0.1524 -0.7204 11 6 5.3198 -0.1679 -0.9001 12 6 6.0684 -1.2879 -0.5495 13 7 5.4834 -2.3519 -0.0321 14 6 4.1682 -2.3623 0.1586 15 6 3.5094 -3.5511 0.7368 16 6 2.5347 -3.3963 1.7335 17 6 1.9175 -4.4836 2.2779 18 6 2.2490 -5.7672 1.8481 19 7 1.6328 -6.8724 2.3909 20 1 0.9604 -6.7538 3.0799 21 6 1.9484 -8.1130 1.9812 22 8 1.3811 -9.0668 2.4849 23 6 2.9199 -8.3397 0.9825 24 6 3.5637 -7.2943 0.4074 25 6 3.2259 -5.9382 0.8465 26 6 3.8526 -4.8233 0.2877 27 1 -0.4851 0.8400 -0.0004 28 1 5.8133 0.6969 -1.3183 29 1 7.1375 -1.2865 -0.7030 30 1 2.2708 -2.4059 2.0738 31 1 1.1690 -4.3495 3.0449 32 1 3.1511 -9.3491 0.6755 33 1 4.3082 -7.4576 -0.3577 34 1 4.5997 -4.9466 -0.4825 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244234961.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:38 Heat of formation + Delta-G solvation = 16.316528 kcal Electronic energy + Delta-G solvation = -21919.799037 eV Core-core repulsion = 18587.974617 eV Total energy + Delta-G solvation = -3331.824420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.21312 -41.20573 -39.50903 -36.68776 -36.05028 -35.04041 -34.43389 -32.96911 -31.24689 -29.93162 -28.02435 -25.43774 -25.06194 -24.19584 -23.49470 -22.77998 -19.98307 -19.43326 -19.08056 -18.35747 -18.01843 -17.17193 -16.95332 -16.51558 -16.29838 -15.82343 -15.69333 -15.07854 -14.91177 -14.76084 -14.68718 -14.08104 -14.03620 -13.69683 -13.51864 -13.23725 -12.91233 -12.71094 -12.39343 -12.15484 -11.98427 -11.69250 -11.43605 -11.29081 -11.24813 -11.08661 -10.03047 -9.51683 -9.46285 -8.98298 -8.80588 -6.75880 -0.43510 -0.10673 0.53109 0.81342 0.89445 1.44804 1.53486 1.59669 1.97305 2.13154 2.33441 2.56576 2.96436 3.46785 3.52147 3.60078 3.66394 3.75408 3.98964 4.12218 4.23721 4.30142 4.39253 4.49019 4.67963 4.77136 4.80570 4.88360 4.97513 5.11745 5.15323 5.27696 5.39437 5.63760 5.66956 5.73235 5.80775 5.98796 6.05747 6.36844 6.42805 6.93730 7.05663 7.51300 7.93987 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.004730 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.239108 B = 5918.288472 C = 6955.757248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.058 3.942 3 Si 1.033 2.967 4 H -0.277 1.277 5 H -0.312 1.312 6 H -0.281 1.281 7 C -0.409 4.409 8 H 0.099 0.901 9 C 0.192 3.808 10 N -0.561 5.561 11 C 0.097 3.903 12 C -0.097 4.097 13 N -0.417 5.417 14 C -0.009 4.009 15 C -0.037 4.037 16 C -0.045 4.045 17 C -0.159 4.159 18 C 0.170 3.830 19 N -0.618 5.618 20 H 0.420 0.580 21 C 0.527 3.473 22 O -0.595 6.595 23 C -0.239 4.239 24 C 0.014 3.986 25 C -0.143 4.143 26 C -0.040 4.040 27 H 0.302 0.698 28 H 0.176 0.824 29 H 0.177 0.823 30 H 0.128 0.872 31 H 0.155 0.845 32 H 0.171 0.829 33 H 0.180 0.820 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 -5.593 0.947 8.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.165 4.165 3 Si 0.865 3.135 4 H -0.203 1.203 5 H -0.243 1.243 6 H -0.208 1.208 7 C -0.440 4.440 8 H 0.117 0.883 9 C 0.068 3.932 10 N -0.283 5.283 11 C -0.069 4.069 12 C -0.257 4.257 13 N -0.129 5.129 14 C -0.156 4.156 15 C -0.039 4.039 16 C -0.064 4.064 17 C -0.179 4.179 18 C 0.068 3.932 19 N -0.255 5.255 20 H 0.259 0.741 21 C 0.326 3.674 22 O -0.480 6.480 23 C -0.259 4.259 24 C -0.007 4.007 25 C -0.145 4.145 26 C -0.060 4.060 27 H 0.113 0.887 28 H 0.193 0.807 29 H 0.194 0.806 30 H 0.146 0.854 31 H 0.173 0.827 32 H 0.189 0.811 33 H 0.197 0.803 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.560 -6.174 1.104 8.381 hybrid contribution -0.298 1.141 0.176 1.192 sum 5.262 -5.033 1.280 7.393 Atomic orbital electron populations 1.69573 1.09048 1.32577 1.31575 1.26866 0.95354 1.04962 0.89284 0.84100 0.75890 0.74257 0.79232 1.20337 1.24317 1.20774 1.19601 0.89773 0.96013 1.38594 0.88270 1.19401 0.94627 0.88791 0.90397 1.67684 1.11658 1.28354 1.20564 1.23885 0.90147 0.99182 0.93670 1.23251 1.01500 0.91584 1.09320 1.67871 1.09906 1.27224 1.07869 1.20237 0.89849 0.96228 1.09266 1.18267 0.97287 0.91370 0.97017 1.21089 0.92893 0.99371 0.93096 1.20498 1.04030 0.89220 1.04181 1.18073 0.93679 0.87161 0.94270 1.43291 1.38702 1.05216 1.38325 0.74064 1.17539 0.84224 0.81496 0.84148 1.90896 1.56349 1.40730 1.60036 1.22230 1.00653 1.02277 1.00743 1.22965 0.94428 0.88703 0.94594 1.18762 1.00661 0.94787 1.00316 1.21278 0.97318 0.89525 0.97840 0.88712 0.80716 0.80624 0.85430 0.82722 0.81119 0.80268 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.95 13.92 21.86 0.30 -38.65 16 2 C 0.06 2.80 5.52 85.33 0.47 3.27 16 3 Si 1.03 44.81 25.45 68.60 1.75 46.56 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.31 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.69 6.69 99.48 0.67 -12.02 16 7 C -0.41 -19.93 7.74 23.35 0.18 -19.75 16 8 H 0.10 4.93 5.98 -2.91 -0.02 4.92 16 9 C 0.19 9.03 6.14 40.35 0.25 9.27 16 10 N -0.56 -25.48 5.41 -187.84 -1.02 -26.50 16 11 C 0.10 3.62 11.22 84.96 0.95 4.58 16 12 C -0.10 -3.46 11.22 84.90 0.95 -2.50 16 13 N -0.42 -16.75 10.30 -182.32 -1.88 -18.63 16 14 C -0.01 -0.40 6.40 42.41 0.27 -0.13 16 15 C -0.04 -1.39 5.25 -20.05 -0.11 -1.50 16 16 C -0.04 -1.57 7.54 22.33 0.17 -1.40 16 17 C -0.16 -4.57 9.83 22.10 0.22 -4.35 16 18 C 0.17 4.75 6.66 39.16 0.26 5.01 16 19 N -0.62 -16.06 5.29 -311.95 -1.65 -17.71 16 20 H 0.42 9.27 8.76 -92.71 -0.81 8.45 16 21 C 0.53 15.23 7.66 85.02 0.65 15.89 16 22 O -0.59 -21.08 17.87 -4.91 -0.09 -21.17 16 23 C -0.24 -5.48 9.91 22.37 0.22 -5.26 16 24 C 0.01 0.28 10.10 23.80 0.24 0.52 16 25 C -0.14 -3.92 5.87 -20.14 -0.12 -4.03 16 26 C -0.04 -1.25 9.46 22.83 0.22 -1.04 16 27 H 0.30 13.24 8.29 -92.70 -0.77 12.48 16 28 H 0.18 5.05 8.06 -2.91 -0.02 5.03 16 29 H 0.18 4.81 8.06 -2.91 -0.02 4.79 16 30 H 0.13 4.86 6.74 -2.91 -0.02 4.84 16 31 H 0.16 3.55 8.06 -2.91 -0.02 3.52 16 32 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 33 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.14 4.08 8.06 -2.90 -0.02 4.05 16 Total: -1.00 -62.14 297.78 2.57 -59.57 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.32 Total: 17.95 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 4.83 Total: -1.43 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -4.24 Total: -101.48 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.09 Total: -21.17 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.75 Total: 46.56 kcal Total: -62.14 2.57 -59.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244234961.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.889 kcal (2) G-P(sol) polarization free energy of solvation -62.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds