Wall clock time and date at job start Tue Mar 31 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86804 * 119.99463 * 2 1 4 4 H 1.48494 * 109.47289 * 274.98381 * 3 2 1 5 5 H 1.48498 * 109.47073 * 34.98619 * 3 2 1 6 6 H 1.48501 * 109.46707 * 154.98385 * 3 2 1 7 7 C 1.40040 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 186.35931 * 7 2 1 9 9 C 1.41325 * 120.00035 * 6.36078 * 7 2 1 10 10 C 1.40848 * 120.14589 * 173.84032 * 9 7 2 11 11 N 1.31868 * 119.96815 * 180.02562 * 10 9 7 12 12 C 1.32196 * 120.28598 * 359.97438 * 11 10 9 13 13 C 1.40025 * 120.29802 * 359.97438 * 12 11 10 14 14 C 1.48252 * 119.98961 * 179.97438 * 13 12 11 15 15 C 1.39971 * 119.92628 * 185.17891 * 14 13 12 16 16 C 1.36485 * 120.71184 * 180.25529 * 15 14 13 17 17 C 1.39247 * 120.19417 * 359.82429 * 16 15 14 18 18 N 1.37790 * 120.78858 * 179.97438 * 17 16 15 19 19 H 0.97007 * 119.49234 * 359.95103 * 18 17 16 20 20 C 1.34424 * 121.01760 * 179.97438 * 18 17 16 21 21 O 1.21875 * 119.15281 * 180.02562 * 20 18 17 22 22 C 1.41150 * 121.68843 * 0.02662 * 20 18 17 23 23 C 1.35581 * 120.20559 * 359.95081 * 22 20 18 24 24 C 1.40866 * 119.67314 * 359.97438 * 17 16 15 25 25 C 1.38839 * 119.92171 * 5.00218 * 14 13 12 26 26 N 1.32568 * 120.02151 * 0.25756 * 13 12 11 27 27 H 0.97001 * 120.00486 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.01868 * 0.04308 * 10 9 7 29 29 H 1.07997 * 119.85209 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.64241 * 0.07996 * 15 14 13 31 31 H 1.07997 * 119.90042 * 179.79619 * 16 15 14 32 32 H 1.07994 * 119.89334 * 179.97438 * 22 20 18 33 33 H 1.07998 * 120.74167 * 180.02562 * 23 22 20 34 34 H 1.08005 * 120.31677 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2412 1.6179 0.0000 4 1 2.3834 2.1074 -1.3947 5 1 1.4953 2.6200 0.8028 6 1 3.5875 1.4122 0.5921 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2156 0.1031 9 6 1.3076 -2.4329 -0.1367 10 6 2.0153 -3.6435 -0.2679 11 7 1.3586 -4.7800 -0.3952 12 6 0.0367 -4.7891 -0.3999 13 6 -0.6785 -3.5924 -0.2691 14 6 -2.1609 -3.6106 -0.2758 15 6 -2.8741 -2.4064 -0.2544 16 6 -4.2390 -2.4045 -0.2550 17 6 -4.9410 -3.6068 -0.2806 18 7 -6.3188 -3.6191 -0.2809 19 1 -6.8039 -2.7793 -0.2623 20 6 -7.0011 -4.7771 -0.3062 21 8 -8.2195 -4.7484 -0.3061 22 6 -6.3426 -6.0253 -0.3328 23 6 -4.9880 -6.0819 -0.3344 24 6 -4.2355 -4.8258 -0.3066 25 6 -2.8386 -4.8219 -0.3070 26 7 -0.0305 -2.4426 -0.1450 27 1 -0.4851 0.8400 -0.0004 28 1 3.0953 -3.6413 -0.2640 29 1 -0.4941 -5.7238 -0.5050 30 1 -2.3386 -1.4687 -0.2344 31 1 -4.7760 -1.4677 -0.2350 32 1 -6.9196 -6.9379 -0.3522 33 1 -4.4752 -7.0322 -0.3551 34 1 -2.2909 -5.7526 -0.3269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244238472.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:42 Heat of formation + Delta-G solvation = 44.355505 kcal Electronic energy + Delta-G solvation = -21554.964312 eV Core-core repulsion = 18224.355753 eV Total energy + Delta-G solvation = -3330.608558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13708 -39.30469 -38.25282 -35.47101 -34.21296 -34.04627 -32.30105 -31.11400 -30.02077 -28.45128 -26.16667 -24.09669 -23.79546 -23.07245 -22.02127 -21.14653 -18.36841 -18.02415 -17.84305 -16.91249 -16.07968 -15.59756 -15.43614 -15.35859 -15.08354 -14.62864 -14.19466 -13.83200 -13.47225 -13.39577 -13.10916 -12.77644 -12.58292 -11.92971 -11.65842 -11.51215 -11.43425 -11.01061 -11.00064 -10.82244 -10.50041 -10.43115 -10.13932 -9.97410 -9.68822 -9.29168 -8.51877 -8.27302 -7.62713 -7.36206 -6.70237 -4.84958 0.56639 1.06860 1.91550 2.40112 2.78370 2.94063 2.97042 2.98388 3.05650 3.33858 3.72889 4.09159 4.50852 4.54797 4.58485 4.69120 4.97515 5.18176 5.31013 5.45387 5.62149 5.71726 5.74574 5.81883 5.86587 6.08344 6.18637 6.28840 6.31497 6.48362 6.64897 6.74313 6.79512 6.92682 6.99673 7.08504 7.14420 7.47411 7.88592 7.98407 8.24414 8.49341 9.06705 9.62550 9.96307 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.003991 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.491243 B = 7013.616141 C = 8235.483664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.410 4.410 8 H 0.092 0.908 9 C 0.209 3.791 10 C -0.059 4.059 11 N -0.429 5.429 12 C -0.108 4.108 13 C 0.136 3.864 14 C -0.041 4.041 15 C -0.020 4.020 16 C -0.175 4.175 17 C 0.178 3.822 18 N -0.628 5.628 19 H 0.412 0.588 20 C 0.535 3.465 21 O -0.557 6.557 22 C -0.235 4.235 23 C 0.000 4.000 24 C -0.142 4.142 25 C -0.048 4.048 26 N -0.444 5.444 27 H 0.277 0.723 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.161 0.839 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 -2.915 -0.363 7.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.158 4.158 3 Si 0.738 3.262 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.442 4.442 8 H 0.110 0.890 9 C 0.082 3.918 10 C -0.229 4.229 11 N -0.140 5.140 12 C -0.267 4.267 13 C -0.011 4.011 14 C -0.043 4.043 15 C -0.039 4.039 16 C -0.195 4.195 17 C 0.076 3.924 18 N -0.266 5.266 19 H 0.250 0.750 20 C 0.332 3.668 21 O -0.439 6.439 22 C -0.256 4.256 23 C -0.021 4.021 24 C -0.145 4.145 25 C -0.068 4.068 26 N -0.161 5.161 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.146 0.854 30 H 0.178 0.822 31 H 0.148 0.852 32 H 0.168 0.832 33 H 0.162 0.838 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.278 -2.944 -0.361 7.859 hybrid contribution 0.261 1.111 0.001 1.141 sum -7.017 -1.833 -0.360 7.261 Atomic orbital electron populations 1.70016 1.07491 1.28470 1.27440 1.26108 0.94995 1.01482 0.93228 0.86188 0.80584 0.80154 0.79311 1.19250 1.19907 1.18250 1.19674 0.95141 0.89151 1.40234 0.88964 1.19346 0.88663 0.93468 0.90305 1.23244 0.99400 0.89329 1.10923 1.67676 1.08781 1.30038 1.07509 1.22492 0.90727 0.96922 1.16512 1.20538 0.92164 0.91893 0.96533 1.18655 0.91967 0.92482 1.01206 1.21437 0.92320 1.00344 0.89844 1.20458 0.94889 0.95489 1.08678 1.18044 0.82200 0.94695 0.97448 1.43413 1.05588 1.10767 1.66786 0.75010 1.17111 0.87510 0.84657 0.77481 1.90917 1.13228 1.87669 1.52099 1.22058 0.95203 0.97533 1.10795 1.22690 0.93697 0.97156 0.88577 1.18485 0.93570 0.91012 1.11420 1.21262 0.91284 0.98463 0.95763 1.69497 1.08174 1.23042 1.15395 0.91155 0.84753 0.85424 0.82189 0.85171 0.83229 0.83799 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -16.50 11.51 55.55 0.64 -15.86 16 2 C 0.07 1.54 5.49 -17.34 -0.10 1.44 16 3 Si 0.91 16.63 29.56 -169.99 -5.03 11.61 16 4 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 7 C -0.41 -9.80 9.15 -37.73 -0.35 -10.15 16 8 H 0.09 2.03 7.86 -52.49 -0.41 1.62 16 9 C 0.21 5.22 6.54 -84.84 -0.56 4.66 16 10 C -0.06 -1.38 10.98 -16.55 -0.18 -1.56 16 11 N -0.43 -9.96 10.47 -12.05 -0.13 -10.08 16 12 C -0.11 -2.32 10.60 -16.73 -0.18 -2.50 16 13 C 0.14 2.98 6.73 -82.76 -0.56 2.42 16 14 C -0.04 -0.74 5.87 -104.91 -0.62 -1.35 16 15 C -0.02 -0.34 9.50 -39.56 -0.38 -0.72 16 16 C -0.17 -2.42 9.83 -39.84 -0.39 -2.81 16 17 C 0.18 2.42 6.65 -83.82 -0.56 1.86 16 18 N -0.63 -8.00 5.29 -12.57 -0.07 -8.06 16 19 H 0.41 4.41 8.76 -40.82 -0.36 4.05 16 20 C 0.54 7.66 7.66 -15.31 -0.12 7.55 16 21 O -0.56 -9.67 17.87 5.03 0.09 -9.58 16 22 C -0.24 -2.79 9.91 -39.43 -0.39 -3.18 16 23 C 0.00 -0.01 10.10 -37.22 -0.38 -0.38 16 24 C -0.14 -1.91 5.87 -105.05 -0.62 -2.53 16 25 C -0.05 -0.70 9.20 -38.82 -0.36 -1.06 16 26 N -0.44 -10.91 7.15 -7.51 -0.05 -10.96 16 27 H 0.28 5.75 8.29 -40.82 -0.34 5.41 16 28 H 0.13 2.85 8.06 -52.49 -0.42 2.43 16 29 H 0.13 2.30 6.20 -52.49 -0.33 1.97 16 30 H 0.16 3.07 7.53 -52.49 -0.40 2.67 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 34 H 0.14 1.76 6.21 -52.48 -0.33 1.43 16 LS Contribution 304.34 15.07 4.59 4.59 Total: -1.00 -29.23 304.34 -8.31 -37.54 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -2.64 Total: 9.12 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -5.71 Total: -8.31 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.39 Total: -44.96 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.61 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.23 -8.31 -37.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244238472.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.892 kcal (2) G-P(sol) polarization free energy of solvation -29.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds