Wall clock time and date at job start Tue Mar 31 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86804 * 119.99463 * 2 1 4 4 H 1.48494 * 109.47289 * 274.98381 * 3 2 1 5 5 H 1.48498 * 109.47073 * 34.98619 * 3 2 1 6 6 H 1.48501 * 109.46707 * 154.98385 * 3 2 1 7 7 C 1.40040 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00020 * 186.35931 * 7 2 1 9 9 C 1.41325 * 120.00035 * 6.36078 * 7 2 1 10 10 C 1.40848 * 120.14589 * 173.84032 * 9 7 2 11 11 N 1.31868 * 119.96815 * 180.02562 * 10 9 7 12 12 C 1.32196 * 120.28598 * 359.97438 * 11 10 9 13 13 C 1.40025 * 120.29802 * 359.97438 * 12 11 10 14 14 C 1.48252 * 119.98961 * 179.97438 * 13 12 11 15 15 C 1.39971 * 119.92628 * 185.17891 * 14 13 12 16 16 C 1.36485 * 120.71184 * 180.25529 * 15 14 13 17 17 C 1.39247 * 120.19417 * 359.82429 * 16 15 14 18 18 N 1.37790 * 120.78858 * 179.97438 * 17 16 15 19 19 H 0.97007 * 119.49234 * 359.95103 * 18 17 16 20 20 C 1.34424 * 121.01760 * 179.97438 * 18 17 16 21 21 O 1.21875 * 119.15281 * 180.02562 * 20 18 17 22 22 C 1.41150 * 121.68843 * 0.02662 * 20 18 17 23 23 C 1.35581 * 120.20559 * 359.95081 * 22 20 18 24 24 C 1.40866 * 119.67314 * 359.97438 * 17 16 15 25 25 C 1.38839 * 119.92171 * 5.00218 * 14 13 12 26 26 N 1.32568 * 120.02151 * 0.25756 * 13 12 11 27 27 H 0.97001 * 120.00486 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.01868 * 0.04308 * 10 9 7 29 29 H 1.07997 * 119.85209 * 179.97438 * 12 11 10 30 30 H 1.07999 * 119.64241 * 0.07996 * 15 14 13 31 31 H 1.07997 * 119.90042 * 179.79619 * 16 15 14 32 32 H 1.07994 * 119.89334 * 179.97438 * 22 20 18 33 33 H 1.07998 * 120.74167 * 180.02562 * 23 22 20 34 34 H 1.08005 * 120.31677 * 359.97438 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2412 1.6179 0.0000 4 1 2.3834 2.1074 -1.3947 5 1 1.4953 2.6200 0.8028 6 1 3.5875 1.4122 0.5921 7 6 2.0076 -1.2127 -0.0005 8 1 3.0826 -1.2156 0.1031 9 6 1.3076 -2.4329 -0.1367 10 6 2.0153 -3.6435 -0.2679 11 7 1.3586 -4.7800 -0.3952 12 6 0.0367 -4.7891 -0.3999 13 6 -0.6785 -3.5924 -0.2691 14 6 -2.1609 -3.6106 -0.2758 15 6 -2.8741 -2.4064 -0.2544 16 6 -4.2390 -2.4045 -0.2550 17 6 -4.9410 -3.6068 -0.2806 18 7 -6.3188 -3.6191 -0.2809 19 1 -6.8039 -2.7793 -0.2623 20 6 -7.0011 -4.7771 -0.3062 21 8 -8.2195 -4.7484 -0.3061 22 6 -6.3426 -6.0253 -0.3328 23 6 -4.9880 -6.0819 -0.3344 24 6 -4.2355 -4.8258 -0.3066 25 6 -2.8386 -4.8219 -0.3070 26 7 -0.0305 -2.4426 -0.1450 27 1 -0.4851 0.8400 -0.0004 28 1 3.0953 -3.6413 -0.2640 29 1 -0.4941 -5.7238 -0.5050 30 1 -2.3386 -1.4687 -0.2344 31 1 -4.7760 -1.4677 -0.2350 32 1 -6.9196 -6.9379 -0.3522 33 1 -4.4752 -7.0322 -0.3551 34 1 -2.2909 -5.7526 -0.3269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244238472.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:42 Heat of formation + Delta-G solvation = 26.237472 kcal Electronic energy + Delta-G solvation = -21555.749968 eV Core-core repulsion = 18224.355753 eV Total energy + Delta-G solvation = -3331.394215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24522 -40.90746 -39.53949 -36.71604 -35.90139 -35.07300 -33.94615 -32.66514 -31.20529 -29.85126 -27.85109 -25.30270 -25.06854 -24.40767 -23.45737 -22.61419 -19.54382 -19.50803 -19.13344 -18.16829 -17.55237 -17.15147 -16.75052 -16.55080 -16.54431 -15.93071 -15.44241 -15.05468 -14.95856 -14.82405 -14.33174 -14.09201 -13.66860 -13.41882 -13.24078 -13.02322 -12.88319 -12.48725 -12.23691 -12.14064 -11.94610 -11.69736 -11.54187 -11.45896 -11.26827 -10.87847 -9.97225 -9.49880 -9.35096 -8.73920 -8.38993 -6.63794 -0.46136 -0.25358 0.79411 0.87456 1.15597 1.43532 1.54309 1.56828 1.92830 2.14663 2.20086 2.75974 3.00898 3.39742 3.54701 3.67669 3.73087 3.86691 4.04560 4.14702 4.23841 4.37961 4.44692 4.55322 4.71575 4.75694 4.90774 4.99369 5.12891 5.18441 5.19571 5.27343 5.37646 5.59661 5.67840 5.75156 5.83332 6.01604 6.14242 6.50369 6.73606 6.90928 7.31889 7.89096 8.31053 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.022676 B = 0.003991 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.491243 B = 7013.616141 C = 8235.483664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.028 3.972 3 Si 0.989 3.011 4 H -0.265 1.265 5 H -0.268 1.268 6 H -0.254 1.254 7 C -0.439 4.439 8 H 0.100 0.900 9 C 0.180 3.820 10 C -0.087 4.087 11 N -0.438 5.438 12 C -0.114 4.114 13 C 0.129 3.871 14 C -0.074 4.074 15 C -0.037 4.037 16 C -0.163 4.163 17 C 0.181 3.819 18 N -0.620 5.620 19 H 0.420 0.580 20 C 0.527 3.473 21 O -0.593 6.593 22 C -0.239 4.239 23 C 0.017 3.983 24 C -0.144 4.144 25 C -0.029 4.029 26 N -0.470 5.470 27 H 0.285 0.715 28 H 0.146 0.854 29 H 0.165 0.835 30 H 0.132 0.868 31 H 0.154 0.846 32 H 0.172 0.828 33 H 0.187 0.813 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 -3.881 -0.425 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.471 4.471 8 H 0.118 0.882 9 C 0.053 3.947 10 C -0.255 4.255 11 N -0.150 5.150 12 C -0.273 4.273 13 C -0.018 4.018 14 C -0.076 4.076 15 C -0.057 4.057 16 C -0.184 4.184 17 C 0.078 3.922 18 N -0.257 5.257 19 H 0.260 0.740 20 C 0.326 3.674 21 O -0.478 6.478 22 C -0.260 4.260 23 C -0.003 4.003 24 C -0.147 4.147 25 C -0.049 4.049 26 N -0.188 5.188 27 H 0.096 0.904 28 H 0.163 0.837 29 H 0.182 0.818 30 H 0.150 0.850 31 H 0.172 0.828 32 H 0.189 0.811 33 H 0.204 0.796 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.345 -3.909 -0.421 9.225 hybrid contribution 0.412 1.328 0.016 1.391 sum -7.933 -2.581 -0.405 8.352 Atomic orbital electron populations 1.70093 1.08829 1.29791 1.27401 1.26963 0.95795 1.04431 0.92435 0.85068 0.79236 0.75523 0.79232 1.19029 1.19233 1.17739 1.20046 0.95795 0.89917 1.41296 0.88208 1.19767 0.89426 0.94457 0.91024 1.23384 1.00074 0.89359 1.12709 1.67693 1.09771 1.29850 1.07676 1.23091 0.90402 0.98342 1.15505 1.21160 0.94279 0.91425 0.94929 1.18630 0.90076 0.94295 1.04617 1.21205 0.93481 0.99128 0.91848 1.20541 0.93655 0.96918 1.07242 1.18124 0.82486 0.94845 0.96695 1.43372 1.05227 1.11225 1.65920 0.74048 1.17600 0.87218 0.85645 0.76910 1.90907 1.14766 1.88147 1.53997 1.22244 0.95770 0.97124 1.10824 1.22992 0.93095 0.97507 0.86699 1.18758 0.93248 0.92213 1.10437 1.21407 0.91771 0.97950 0.93740 1.69502 1.08183 1.24665 1.16472 0.90412 0.83657 0.81771 0.85021 0.82807 0.81073 0.79604 0.81902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -35.32 11.51 21.84 0.25 -35.06 16 2 C 0.03 1.27 5.49 85.29 0.47 1.74 16 3 Si 0.99 34.35 29.56 68.60 2.03 36.37 16 4 H -0.27 -9.06 7.11 99.48 0.71 -8.35 16 5 H -0.27 -8.92 7.11 99.48 0.71 -8.22 16 6 H -0.25 -8.52 7.11 99.48 0.71 -7.82 16 7 C -0.44 -21.73 9.15 23.47 0.21 -21.52 16 8 H 0.10 4.55 7.86 -2.91 -0.02 4.53 16 9 C 0.18 9.34 6.54 40.24 0.26 9.60 16 10 C -0.09 -4.23 10.98 85.33 0.94 -3.29 16 11 N -0.44 -20.50 10.47 -192.04 -2.01 -22.51 16 12 C -0.11 -4.85 10.60 85.07 0.90 -3.95 16 13 C 0.13 5.75 6.73 42.13 0.28 6.03 16 14 C -0.07 -2.63 5.87 -20.05 -0.12 -2.75 16 15 C -0.04 -1.27 9.50 22.28 0.21 -1.06 16 16 C -0.16 -4.34 9.83 22.10 0.22 -4.12 16 17 C 0.18 4.49 6.65 39.09 0.26 4.75 16 18 N -0.62 -14.40 5.29 -312.04 -1.65 -16.05 16 19 H 0.42 8.22 8.76 -92.70 -0.81 7.41 16 20 C 0.53 13.82 7.66 85.01 0.65 14.48 16 21 O -0.59 -19.69 17.87 -4.91 -0.09 -19.78 16 22 C -0.24 -4.76 9.91 22.37 0.22 -4.54 16 23 C 0.02 0.29 10.10 23.80 0.24 0.54 16 24 C -0.14 -3.38 5.87 -20.14 -0.12 -3.49 16 25 C -0.03 -0.78 9.20 22.77 0.21 -0.57 16 26 N -0.47 -23.99 7.15 -177.67 -1.27 -25.26 16 27 H 0.28 12.13 8.29 -92.71 -0.77 11.36 16 28 H 0.15 6.42 8.06 -2.91 -0.02 6.40 16 29 H 0.17 5.49 6.20 -2.91 -0.02 5.48 16 30 H 0.13 5.31 7.53 -2.91 -0.02 5.29 16 31 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 32 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 33 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.16 3.45 6.21 -2.91 -0.02 3.43 16 Total: -1.00 -65.92 304.34 2.47 -63.46 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.37 Total: 26.99 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 4.84 Total: -8.16 kcal Atomic # 7 Polarization: -94.20 SS G_CDS: -4.68 Total: -98.88 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.09 Total: -19.78 kcal Atomic # 14 Polarization: 34.35 SS G_CDS: 2.03 Total: 36.37 kcal Total: -65.92 2.47 -63.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244238472.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.694 kcal (2) G-P(sol) polarization free energy of solvation -65.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds