Wall clock time and date at job start Tue Mar 31 2020 07:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 H 1.08996 * 109.47361 * 52.78950 * 3 2 1 5 5 C 1.50700 * 109.47302 * 172.78976 * 3 2 1 6 6 H 1.07992 * 120.00300 * 113.42457 * 5 3 2 7 7 C 1.37886 * 119.99862 * 293.42584 * 5 3 2 8 8 N 1.31512 * 119.99782 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00033 * 180.27453 * 7 5 3 10 10 H 1.48495 * 109.47279 * 179.72188 * 9 7 5 11 11 H 1.48498 * 109.47063 * 299.72331 * 9 7 5 12 12 H 1.48505 * 109.47074 * 59.72461 * 9 7 5 13 13 N 1.46898 * 109.46812 * 292.78507 * 3 2 1 14 14 C 1.46508 * 110.99769 * 200.26640 * 13 3 2 15 15 C 1.50425 * 111.23577 * 291.65480 * 14 13 3 16 16 C 1.38133 * 119.76715 * 157.91913 * 15 14 13 17 17 C 1.38301 * 120.23782 * 179.77777 * 16 15 14 18 18 C 1.38539 * 120.56025 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 120.01622 * 180.02562 * 18 17 16 20 20 C 1.38116 * 119.97082 * 0.06889 * 18 17 16 21 21 C 1.39542 * 119.58574 * 359.97438 * 20 18 17 22 22 C 1.47690 * 120.45739 * 179.86494 * 21 20 18 23 23 O 1.21256 * 121.53282 * 349.13053 * 22 21 20 24 24 C 1.47298 * 110.99721 * 75.83697 * 13 3 2 25 25 H 1.08993 * 109.47176 * 325.87867 * 1 2 3 26 26 H 1.09007 * 109.46820 * 85.87771 * 1 2 3 27 27 H 1.08998 * 109.47302 * 205.87396 * 1 2 3 28 28 H 1.08999 * 109.47435 * 239.99817 * 2 1 3 29 29 H 1.09001 * 109.47182 * 120.00168 * 2 1 3 30 30 H 0.97000 * 119.99904 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.12733 * 52.10800 * 14 13 3 32 32 H 1.08997 * 109.12437 * 171.20323 * 14 13 3 33 33 H 1.08004 * 119.88522 * 359.75996 * 16 15 14 34 34 H 1.08005 * 119.72229 * 179.97438 * 17 16 15 35 35 H 1.07994 * 120.20804 * 179.97438 * 20 18 17 36 36 H 1.09000 * 109.86627 * 178.39256 * 24 13 3 37 37 H 1.09000 * 109.86535 * 299.36934 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5752 1.9922 0.8184 5 6 3.5364 1.4463 0.1783 6 1 4.1751 1.7832 -0.6247 7 6 4.0901 1.0195 1.3668 8 7 3.3124 0.6087 2.3445 9 14 5.9446 1.0314 1.5907 10 1 6.2824 0.5354 2.9490 11 1 6.5718 0.1513 0.5722 12 1 6.4539 2.4169 1.4289 13 7 1.6975 2.0829 -1.2769 14 6 2.5463 3.2515 -1.5225 15 6 2.2405 4.3604 -0.5532 16 6 3.1878 5.3344 -0.3043 17 6 2.9152 6.3610 0.5815 18 6 1.6921 6.4265 1.2289 19 17 1.3646 7.7217 2.3375 20 6 0.7337 5.4605 0.9925 21 6 1.0065 4.4232 0.0999 22 6 -0.0032 3.3784 -0.1649 23 8 -1.0028 3.2760 0.5138 24 6 0.2687 2.4382 -1.3227 25 1 -0.3633 0.8507 0.5764 26 1 -0.3633 0.0739 -1.0251 27 1 -0.3634 -0.9246 0.4485 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7019 0.3088 3.1807 31 1 3.5918 2.9622 -1.4159 32 1 2.3774 3.6084 -2.5384 33 1 4.1449 5.2942 -0.8031 34 1 3.6621 7.1179 0.7702 35 1 -0.2209 5.5076 1.4954 36 1 0.0411 2.9369 -2.2648 37 1 -0.3398 1.5394 -1.2229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:27 Heat of formation + Delta-G solvation = 1.714927 kcal Electronic energy + Delta-G solvation = -22125.264599 eV Core-core repulsion = 18893.914500 eV Total energy + Delta-G solvation = -3231.350099 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.48653 -38.02506 -37.15842 -36.19733 -33.32797 -31.97667 -31.16337 -29.94655 -28.76653 -26.53141 -24.36924 -23.35082 -22.35993 -21.37233 -20.24603 -18.57396 -17.01130 -16.49744 -16.14387 -15.48783 -14.88500 -14.65676 -14.36757 -14.27023 -14.04321 -13.76569 -13.34749 -12.89478 -12.71229 -12.37364 -12.17018 -11.99148 -11.72737 -11.33539 -11.25215 -11.17961 -10.94550 -10.88902 -10.83039 -10.50561 -10.12429 -9.86419 -9.67344 -9.42481 -8.91071 -8.82220 -8.53189 -8.26219 -7.46426 -6.13299 -4.19591 0.88492 1.39460 2.21888 2.65533 3.23579 3.29910 3.30390 3.86115 4.28213 4.35781 4.74833 4.95580 5.01040 5.18972 5.27571 5.37101 5.54032 5.57696 5.76683 5.91534 5.97666 6.07468 6.15429 6.23955 6.29253 6.34316 6.39355 6.46873 6.65605 6.86857 6.91715 6.98950 7.15931 7.32611 7.53112 7.68577 7.79478 7.92627 8.12198 8.35505 8.85051 9.45799 10.94352 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.007317 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.606948 B = 3825.896940 C = 4962.203177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.105 4.105 3 C 0.209 3.791 4 H 0.014 0.986 5 C -0.521 4.521 6 H 0.068 0.932 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.892 3.108 10 H -0.287 1.287 11 H -0.275 1.275 12 H -0.276 1.276 13 N -0.514 5.514 14 C 0.081 3.919 15 C -0.024 4.024 16 C -0.116 4.116 17 C -0.081 4.081 18 C -0.059 4.059 19 Cl -0.079 7.079 20 C -0.054 4.054 21 C -0.157 4.157 22 C 0.378 3.622 23 O -0.459 6.459 24 C -0.012 4.012 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.263 0.737 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.095 0.905 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.872 8.943 -6.219 11.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.144 4.144 3 C 0.104 3.896 4 H 0.031 0.969 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.719 3.281 10 H -0.213 1.213 11 H -0.200 1.200 12 H -0.202 1.202 13 N -0.237 5.237 14 C -0.047 4.047 15 C -0.026 4.026 16 C -0.134 4.134 17 C -0.100 4.100 18 C -0.086 4.086 19 Cl -0.051 7.051 20 C -0.073 4.073 21 C -0.159 4.159 22 C 0.254 3.746 23 O -0.333 6.333 24 C -0.140 4.140 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.138 0.862 32 H 0.096 0.904 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.113 0.887 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.343 8.553 -5.933 10.670 hybrid contribution 0.934 0.801 1.253 1.756 sum -1.409 9.354 -4.680 10.554 Atomic orbital electron populations 1.22217 0.99468 1.00439 0.99296 1.21525 0.91571 0.99230 1.02079 1.19505 0.96031 0.91002 0.83063 0.96856 1.21139 0.90552 1.44641 0.99534 0.91397 1.24927 0.98008 0.94936 0.95808 1.69921 1.34860 1.42503 1.04698 0.86657 0.85526 0.78492 0.77396 1.21295 1.20049 1.20177 1.62422 0.99528 1.23381 1.38361 1.21372 1.02060 0.86372 0.94854 1.21216 0.91556 0.95251 0.94604 1.20982 0.99679 0.93921 0.98865 1.21156 0.94831 0.98650 0.95382 1.20695 0.96554 0.93137 0.98169 1.98342 1.95614 1.49032 1.62083 1.21103 0.98916 0.91947 0.95293 1.20363 0.96924 0.97807 1.00796 1.23864 0.83188 0.82489 0.85012 1.90466 1.27525 1.68595 1.46723 1.23698 0.94079 0.99951 0.96312 0.93263 0.93497 0.94506 0.93493 0.89700 0.92682 0.86160 0.90374 0.84516 0.85041 0.84581 0.88674 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.27 37.15 0.31 -2.79 16 2 C -0.11 -2.39 5.50 -26.73 -0.15 -2.54 16 3 C 0.21 4.84 1.11 -68.86 -0.08 4.76 16 4 H 0.01 0.37 5.91 -51.93 -0.31 0.06 16 5 C -0.52 -12.88 7.61 -34.44 -0.26 -13.15 16 6 H 0.07 1.60 5.55 -52.49 -0.29 1.31 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -24.37 11.81 55.43 0.65 -23.72 16 9 Si 0.89 20.15 29.54 -169.99 -5.02 15.12 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.51 -9.80 4.80 -230.52 -1.11 -10.91 16 14 C 0.08 1.37 5.18 -5.32 -0.03 1.34 16 15 C -0.02 -0.41 5.36 -104.23 -0.56 -0.97 16 16 C -0.12 -1.75 9.69 -39.60 -0.38 -2.13 16 17 C -0.08 -1.18 9.81 -39.45 -0.39 -1.57 16 18 C -0.06 -0.93 6.32 -39.52 -0.25 -1.18 16 19 Cl -0.08 -1.11 28.96 -51.86 -1.50 -2.61 16 20 C -0.05 -0.94 9.43 -39.14 -0.37 -1.31 16 21 C -0.16 -2.92 5.30 -104.98 -0.56 -3.48 16 22 C 0.38 7.29 4.95 -30.00 -0.15 7.14 16 23 O -0.46 -9.75 16.72 5.58 0.09 -9.66 16 24 C -0.01 -0.21 5.57 -4.31 -0.02 -0.23 16 25 H 0.05 1.04 5.95 -51.93 -0.31 0.73 16 26 H 0.05 0.81 6.24 -51.93 -0.32 0.49 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 2.17 6.48 -51.93 -0.34 1.84 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 31 H 0.12 2.14 5.21 -51.93 -0.27 1.87 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.14 1.71 8.06 -52.48 -0.42 1.28 16 34 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 35 H 0.14 2.34 7.78 -52.49 -0.41 1.93 16 36 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.13 2.17 3.70 -51.93 -0.19 1.98 16 LS Contribution 306.35 15.07 4.62 4.62 Total: -1.00 -28.15 306.35 -9.35 -37.50 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.11 Total: 4.10 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -2.98 Total: -14.45 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: -0.45 Total: -34.63 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.50 Total: -2.61 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.15 -9.35 -37.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.218 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds