Wall clock time and date at job start Tue Mar 31 2020 07:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47267 * 2 1 4 4 H 1.08996 * 109.47361 * 52.78950 * 3 2 1 5 5 C 1.50700 * 109.47302 * 172.78976 * 3 2 1 6 6 H 1.07992 * 120.00300 * 113.42457 * 5 3 2 7 7 C 1.37886 * 119.99862 * 293.42584 * 5 3 2 8 8 N 1.31512 * 119.99782 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00033 * 180.27453 * 7 5 3 10 10 H 1.48495 * 109.47279 * 179.72188 * 9 7 5 11 11 H 1.48498 * 109.47063 * 299.72331 * 9 7 5 12 12 H 1.48505 * 109.47074 * 59.72461 * 9 7 5 13 13 N 1.46898 * 109.46812 * 292.78507 * 3 2 1 14 14 C 1.46508 * 110.99769 * 200.26640 * 13 3 2 15 15 C 1.50425 * 111.23577 * 291.65480 * 14 13 3 16 16 C 1.38133 * 119.76715 * 157.91913 * 15 14 13 17 17 C 1.38301 * 120.23782 * 179.77777 * 16 15 14 18 18 C 1.38539 * 120.56025 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 120.01622 * 180.02562 * 18 17 16 20 20 C 1.38116 * 119.97082 * 0.06889 * 18 17 16 21 21 C 1.39542 * 119.58574 * 359.97438 * 20 18 17 22 22 C 1.47690 * 120.45739 * 179.86494 * 21 20 18 23 23 O 1.21256 * 121.53282 * 349.13053 * 22 21 20 24 24 C 1.47298 * 110.99721 * 75.83697 * 13 3 2 25 25 H 1.08993 * 109.47176 * 325.87867 * 1 2 3 26 26 H 1.09007 * 109.46820 * 85.87771 * 1 2 3 27 27 H 1.08998 * 109.47302 * 205.87396 * 1 2 3 28 28 H 1.08999 * 109.47435 * 239.99817 * 2 1 3 29 29 H 1.09001 * 109.47182 * 120.00168 * 2 1 3 30 30 H 0.97000 * 119.99904 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.12733 * 52.10800 * 14 13 3 32 32 H 1.08997 * 109.12437 * 171.20323 * 14 13 3 33 33 H 1.08004 * 119.88522 * 359.75996 * 16 15 14 34 34 H 1.08005 * 119.72229 * 179.97438 * 17 16 15 35 35 H 1.07994 * 120.20804 * 179.97438 * 20 18 17 36 36 H 1.09000 * 109.86627 * 178.39256 * 24 13 3 37 37 H 1.09000 * 109.86535 * 299.36934 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5752 1.9922 0.8184 5 6 3.5364 1.4463 0.1783 6 1 4.1751 1.7832 -0.6247 7 6 4.0901 1.0195 1.3668 8 7 3.3124 0.6087 2.3445 9 14 5.9446 1.0314 1.5907 10 1 6.2824 0.5354 2.9490 11 1 6.5718 0.1513 0.5722 12 1 6.4539 2.4169 1.4289 13 7 1.6975 2.0829 -1.2769 14 6 2.5463 3.2515 -1.5225 15 6 2.2405 4.3604 -0.5532 16 6 3.1878 5.3344 -0.3043 17 6 2.9152 6.3610 0.5815 18 6 1.6921 6.4265 1.2289 19 17 1.3646 7.7217 2.3375 20 6 0.7337 5.4605 0.9925 21 6 1.0065 4.4232 0.0999 22 6 -0.0032 3.3784 -0.1649 23 8 -1.0028 3.2760 0.5138 24 6 0.2687 2.4382 -1.3227 25 1 -0.3633 0.8507 0.5764 26 1 -0.3633 0.0739 -1.0251 27 1 -0.3634 -0.9246 0.4485 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.7019 0.3088 3.1807 31 1 3.5918 2.9622 -1.4159 32 1 2.3774 3.6084 -2.5384 33 1 4.1449 5.2942 -0.8031 34 1 3.6621 7.1179 0.7702 35 1 -0.2209 5.5076 1.4954 36 1 0.0411 2.9369 -2.2648 37 1 -0.3398 1.5394 -1.2229 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176994.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:25 Heat of formation + Delta-G solvation = -14.489579 kcal Electronic energy + Delta-G solvation = -22125.967279 eV Core-core repulsion = 18893.914500 eV Total energy + Delta-G solvation = -3232.052779 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.88657 -39.37638 -38.68461 -37.42371 -35.04482 -33.68338 -32.47143 -31.33769 -30.35060 -28.10001 -26.05688 -24.67541 -23.87342 -22.74558 -21.91048 -20.04573 -18.57438 -18.06664 -17.58344 -17.00811 -16.37837 -16.21797 -15.83652 -15.66334 -15.60109 -15.17731 -14.60732 -14.47233 -14.10520 -13.91068 -13.78257 -13.57520 -13.13497 -12.82860 -12.73280 -12.65865 -12.57845 -12.51437 -12.10146 -12.04202 -11.76574 -11.60464 -11.21368 -11.08800 -10.65294 -10.44650 -10.11734 -9.53402 -9.02918 -8.09163 -6.19949 -0.43137 0.13197 1.01734 1.28567 1.45800 1.47263 1.53235 2.44009 2.57681 2.95568 3.23464 3.30722 3.72378 3.79607 3.94572 4.08861 4.25977 4.29081 4.49410 4.54043 4.56178 4.61699 4.71714 4.75640 4.90624 4.96597 5.07895 5.11383 5.16829 5.27520 5.34921 5.46448 5.60974 5.67883 5.73920 5.80967 6.18754 6.22979 6.41573 6.63534 6.96060 7.49505 8.98270 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.013108 B = 0.007317 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2135.606948 B = 3825.896940 C = 4962.203177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C 0.218 3.782 4 H -0.028 1.028 5 C -0.519 4.519 6 H 0.082 0.918 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.298 1.298 11 H -0.267 1.267 12 H -0.263 1.263 13 N -0.511 5.511 14 C 0.079 3.921 15 C -0.035 4.035 16 C -0.115 4.115 17 C -0.074 4.074 18 C -0.065 4.065 19 Cl -0.065 7.065 20 C -0.071 4.071 21 C -0.185 4.185 22 C 0.372 3.628 23 O -0.494 6.494 24 C -0.009 4.009 25 H 0.027 0.973 26 H 0.076 0.924 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.257 0.743 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.169 0.831 34 H 0.164 0.836 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.316 10.220 -8.228 13.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C 0.111 3.889 4 H -0.010 1.010 5 C -0.557 4.557 6 H 0.100 0.900 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.225 1.225 11 H -0.192 1.192 12 H -0.188 1.188 13 N -0.234 5.234 14 C -0.048 4.048 15 C -0.037 4.037 16 C -0.133 4.133 17 C -0.093 4.093 18 C -0.091 4.091 19 Cl -0.036 7.036 20 C -0.090 4.090 21 C -0.186 4.186 22 C 0.251 3.749 23 O -0.370 6.370 24 C -0.137 4.137 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.131 0.869 32 H 0.136 0.864 33 H 0.186 0.814 34 H 0.182 0.818 35 H 0.144 0.856 36 H 0.153 0.847 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.775 9.849 -7.979 12.699 hybrid contribution 0.433 0.486 1.868 1.978 sum -0.342 10.335 -6.111 12.012 Atomic orbital electron populations 1.22087 0.97325 0.99966 1.00880 1.21396 0.93522 0.98832 1.00434 1.19207 0.94990 0.90932 0.83754 1.01039 1.21564 0.91726 1.42928 0.99463 0.90004 1.25700 1.01852 0.95089 0.95858 1.70095 1.36476 1.44421 1.05096 0.85731 0.80963 0.79052 0.76716 1.22492 1.19181 1.18798 1.62353 1.00825 1.24770 1.35432 1.21495 1.00968 0.85458 0.96875 1.21350 0.91479 0.96118 0.94761 1.21378 1.00296 0.93078 0.98574 1.21559 0.94679 0.98934 0.94099 1.20846 0.96735 0.93121 0.98435 1.98345 1.95632 1.48092 1.61569 1.21147 0.99297 0.92823 0.95754 1.20466 0.97715 0.98240 1.02224 1.24304 0.82786 0.82777 0.84991 1.90440 1.29010 1.69668 1.47932 1.23780 0.92846 0.99797 0.97267 0.95370 0.90556 0.93620 0.92963 0.93337 0.93410 0.86924 0.86380 0.81380 0.81829 0.85567 0.84720 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.73 8.27 71.98 0.60 -5.14 16 2 C -0.10 -4.72 5.50 30.59 0.17 -4.55 16 3 C 0.22 10.08 1.11 44.17 0.05 10.13 16 4 H -0.03 -1.53 5.91 -2.39 -0.01 -1.54 16 5 C -0.52 -25.36 7.61 25.60 0.19 -25.16 16 6 H 0.08 3.70 5.55 -2.91 -0.02 3.68 16 7 C 0.01 0.74 5.29 84.66 0.45 1.19 16 8 N -0.92 -52.47 11.81 21.45 0.25 -52.22 16 9 Si 0.95 40.96 29.54 68.60 2.03 42.98 16 10 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 12 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 13 N -0.51 -18.63 4.80 -883.22 -4.24 -22.87 16 14 C 0.08 2.45 5.18 85.55 0.44 2.89 16 15 C -0.03 -1.13 5.36 -19.61 -0.11 -1.24 16 16 C -0.11 -3.11 9.69 22.26 0.22 -2.89 16 17 C -0.07 -1.94 9.81 22.36 0.22 -1.72 16 18 C -0.06 -1.96 6.32 22.31 0.14 -1.82 16 19 Cl -0.07 -1.74 28.96 -2.72 -0.08 -1.81 16 20 C -0.07 -2.51 9.43 22.56 0.21 -2.30 16 21 C -0.18 -6.83 5.30 -20.10 -0.11 -6.94 16 22 C 0.37 14.50 4.95 28.48 0.14 14.64 16 23 O -0.49 -21.78 16.72 -2.96 -0.05 -21.82 16 24 C -0.01 -0.30 5.57 85.77 0.48 0.18 16 25 H 0.03 1.21 5.95 -2.39 -0.01 1.19 16 26 H 0.08 2.52 6.24 -2.38 -0.01 2.51 16 27 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.05 2.56 6.48 -2.39 -0.02 2.55 16 30 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.11 3.67 5.21 -2.39 -0.01 3.66 16 32 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 34 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 35 H 0.13 4.55 7.78 -2.91 -0.02 4.53 16 36 H 0.14 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.12 4.10 3.70 -2.39 -0.01 4.09 16 Total: -1.00 -62.91 306.35 2.12 -60.79 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 1.11 Total: 17.68 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: 3.09 Total: -22.74 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -3.98 Total: -75.08 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.05 Total: -21.82 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.81 kcal Total: -62.91 2.12 -60.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176994.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.305 kcal (2) G-P(sol) polarization free energy of solvation -62.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds