Wall clock time and date at job start Tue Mar 31 2020 06:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.36836 * 123.36261 * 269.64092 * 3 2 1 5 5 N 1.38386 * 124.63469 * 359.97438 * 4 3 2 6 6 S 1.70304 * 110.73161 * 179.73172 * 4 3 2 7 7 C 1.75418 * 92.72921 * 0.25406 * 6 4 3 8 8 C 1.33952 * 110.78735 * 0.02562 * 7 6 4 9 9 C 1.52084 * 122.57446 * 179.97438 * 8 7 6 10 10 C 1.53207 * 108.16673 * 343.66017 * 9 8 7 11 11 N 1.46986 * 109.34646 * 49.85722 * 10 9 8 12 12 C 1.46903 * 110.99974 * 52.30589 * 11 10 9 13 13 C 1.53002 * 109.46978 * 170.02214 * 12 11 10 14 14 H 1.08995 * 109.47017 * 60.00594 * 13 12 11 15 15 O 1.42896 * 109.47024 * 299.99999 * 13 12 11 16 16 C 1.50706 * 109.47045 * 180.02562 * 13 12 11 17 17 H 1.08005 * 119.99574 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00330 * 179.97438 * 16 13 12 19 19 N 1.31506 * 120.00353 * 179.97438 * 18 16 13 20 20 Si 1.86802 * 119.99726 * 0.02562 * 18 16 13 21 21 H 1.48503 * 109.47235 * 89.99413 * 20 18 16 22 22 H 1.48498 * 109.47025 * 209.99528 * 20 18 16 23 23 H 1.48505 * 109.47149 * 329.99653 * 20 18 16 24 24 C 1.47047 * 110.98528 * 288.36699 * 11 10 9 25 25 H 0.97001 * 120.00406 * 179.73048 * 5 4 3 26 26 H 0.97005 * 119.99870 * 359.45011 * 5 4 3 27 27 H 1.09002 * 109.72364 * 223.99129 * 9 8 7 28 28 H 1.09000 * 109.72665 * 103.32904 * 9 8 7 29 29 H 1.09004 * 109.49113 * 289.89655 * 10 9 8 30 30 H 1.08996 * 109.49060 * 169.81935 * 10 9 8 31 31 H 1.08995 * 109.47158 * 290.02531 * 12 11 10 32 32 H 1.08995 * 109.46761 * 50.02651 * 12 11 10 33 33 H 0.96696 * 114.00103 * 299.99628 * 15 13 12 34 34 H 0.96998 * 120.00460 * 180.02562 * 19 18 16 35 35 H 1.09008 * 109.61650 * 291.66754 * 24 11 10 36 36 H 1.08996 * 109.77747 * 171.20716 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3205 0.0081 1.1428 5 7 2.8020 0.0165 2.4259 6 16 4.9823 -0.0009 0.7705 7 6 4.6807 -0.0074 -0.9575 8 6 3.3653 -0.0021 -1.2106 9 6 2.8033 -0.0053 -2.6237 10 6 3.9267 0.3949 -3.5855 11 7 5.1189 -0.4185 -3.3069 12 6 4.7904 -1.8503 -3.3038 13 6 6.0818 -2.6697 -3.2603 14 1 6.6385 -2.4227 -2.3563 15 8 6.8775 -2.3660 -4.4077 16 6 5.7449 -4.1386 -3.2577 17 1 4.7128 -4.4559 -3.2840 18 6 6.7540 -5.0773 -3.2218 19 7 6.4600 -6.3591 -3.2190 20 14 8.5390 -4.5285 -3.1755 21 1 8.9723 -4.3719 -1.7638 22 1 9.3877 -5.5475 -3.8437 23 1 8.6759 -3.2296 -3.8822 24 6 5.7444 -0.0186 -2.0376 25 1 3.3991 0.0175 3.1903 26 1 1.8414 0.0253 2.5608 27 1 1.9848 0.7110 -2.6957 28 1 2.4427 -1.0030 -2.8740 29 1 4.1654 1.4494 -3.4472 30 1 3.6033 0.2264 -4.6127 31 1 4.1835 -2.0819 -2.4286 32 1 4.2338 -2.0973 -4.2078 33 1 6.4441 -2.5612 -5.2498 34 1 7.1699 -7.0196 -3.1933 35 1 6.1734 0.9784 -2.1391 36 1 6.5276 -0.7288 -1.7726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308132059.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:03 Heat of formation + Delta-G solvation = 19.416986 kcal Electronic energy + Delta-G solvation = -21248.209408 eV Core-core repulsion = 18051.963385 eV Total energy + Delta-G solvation = -3196.246022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.82534 -37.77889 -35.91279 -35.65865 -33.76686 -32.19375 -30.98589 -29.54563 -28.10897 -25.40018 -24.81045 -23.22532 -21.99459 -20.57346 -18.49262 -18.27630 -18.11359 -17.08779 -15.77006 -15.58206 -15.19497 -14.99420 -14.71387 -14.29829 -14.08514 -13.69102 -13.62109 -13.25071 -13.04681 -12.81780 -12.67901 -12.50567 -12.39859 -11.96044 -11.67229 -11.42769 -11.15097 -10.95228 -10.84427 -10.65218 -10.28141 -10.25199 -9.84272 -8.98051 -8.59084 -8.37074 -8.24467 -7.87611 -7.69652 -6.09799 -4.20775 0.93824 1.10063 1.79218 1.96388 2.74379 3.40070 3.40536 3.50743 3.52509 3.78053 4.16683 4.34122 4.56414 4.80800 5.04397 5.15501 5.23847 5.26202 5.43546 5.49752 5.67168 5.84940 5.88861 5.96044 6.02032 6.13378 6.18512 6.35387 6.45944 6.67847 6.68796 7.05599 7.23009 7.35624 7.51584 7.61440 7.69530 8.32984 8.87406 9.14507 9.55277 11.01001 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.018248 B = 0.005046 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.068435 B = 5547.389268 C = 5827.541523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.289 3.711 3 C -0.173 4.173 4 C 0.138 3.862 5 N -0.830 5.830 6 S 0.194 5.806 7 C -0.248 4.248 8 C -0.024 4.024 9 C -0.097 4.097 10 C 0.055 3.945 11 N -0.512 5.512 12 C 0.033 3.967 13 C 0.202 3.798 14 H 0.052 0.948 15 O -0.572 6.572 16 C -0.564 4.564 17 H 0.070 0.930 18 C 0.084 3.916 19 N -0.895 5.895 20 Si 0.868 3.132 21 H -0.288 1.288 22 H -0.297 1.297 23 H -0.214 1.214 24 C 0.129 3.871 25 H 0.409 0.591 26 H 0.406 0.594 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.354 0.646 34 H 0.264 0.736 35 H 0.087 0.913 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 16.265 8.185 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.025 4.025 3 C -0.195 4.195 4 C -0.092 4.092 5 N -0.371 5.371 6 S 0.453 5.547 7 C -0.367 4.367 8 C -0.036 4.036 9 C -0.138 4.138 10 C -0.074 4.074 11 N -0.233 5.233 12 C -0.094 4.094 13 C 0.144 3.856 14 H 0.069 0.931 15 O -0.377 6.377 16 C -0.602 4.602 17 H 0.088 0.912 18 C -0.120 4.120 19 N -0.532 5.532 20 Si 0.695 3.305 21 H -0.215 1.215 22 H -0.223 1.223 23 H -0.136 1.136 24 C -0.001 4.001 25 H 0.239 0.761 26 H 0.237 0.763 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.200 0.800 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.448 16.364 9.082 18.874 hybrid contribution -1.445 -0.506 0.148 1.539 sum -3.893 15.858 9.230 18.757 Atomic orbital electron populations 1.81232 1.11741 1.12470 1.07257 1.24924 0.91692 0.92300 0.93628 1.15603 0.85299 1.26853 0.91699 1.21640 0.99950 0.99022 0.88552 1.41557 1.10442 1.82525 1.02596 1.83070 0.96248 1.74136 1.01279 1.25237 0.99078 1.15620 0.96758 1.19803 0.90741 0.99357 0.93743 1.21233 0.99441 1.03147 0.89977 1.22245 0.88588 0.98032 0.98518 1.62579 1.26009 1.05413 1.29300 1.22923 1.00334 0.85248 1.00911 1.19717 0.86923 0.92724 0.86223 0.93054 1.86648 1.45986 1.88818 1.16222 1.21507 0.95320 0.89417 1.53910 0.91176 1.24974 1.00069 0.94420 0.92561 1.69958 1.33577 1.00671 1.48966 0.87069 0.83719 0.81415 0.78328 1.21503 1.22347 1.13600 1.21061 0.93307 1.02080 0.83650 0.76127 0.76338 0.90488 0.89641 0.90715 0.89975 0.93902 0.91168 0.79965 0.92653 0.89468 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.08 18.54 41.84 0.78 -6.31 16 2 C 0.29 4.15 14.59 -22.47 -0.33 3.82 16 3 C -0.17 -2.29 5.88 -105.82 -0.62 -2.91 16 4 C 0.14 1.52 7.33 -15.10 -0.11 1.41 16 5 N -0.83 -6.52 9.04 30.89 0.28 -6.24 16 6 S 0.19 2.08 22.99 -107.50 -2.47 -0.39 16 7 C -0.25 -3.29 5.79 -35.37 -0.20 -3.50 16 8 C -0.02 -0.33 5.28 -102.79 -0.54 -0.88 16 9 C -0.10 -1.26 5.29 -27.09 -0.14 -1.41 16 10 C 0.05 0.69 5.94 -3.67 -0.02 0.67 16 11 N -0.51 -7.90 4.84 -235.18 -1.14 -9.04 16 12 C 0.03 0.61 3.57 -3.82 -0.01 0.60 16 13 C 0.20 4.49 2.22 -27.88 -0.06 4.43 16 14 H 0.05 1.18 5.76 -51.93 -0.30 0.88 16 15 O -0.57 -12.50 10.01 -35.23 -0.35 -12.85 16 16 C -0.56 -15.26 9.34 -34.44 -0.32 -15.58 16 17 H 0.07 2.07 7.99 -52.48 -0.42 1.65 16 18 C 0.08 2.38 5.47 -17.82 -0.10 2.28 16 19 N -0.89 -27.08 13.96 55.43 0.77 -26.30 16 20 Si 0.87 21.34 26.99 -169.99 -4.59 16.75 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.30 -7.40 7.11 56.52 0.40 -6.99 16 23 H -0.21 -5.10 5.31 56.52 0.30 -4.80 16 24 C 0.13 1.83 6.00 -4.45 -0.03 1.80 16 25 H 0.41 2.11 8.95 -40.82 -0.37 1.75 16 26 H 0.41 3.05 8.26 -40.82 -0.34 2.72 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.22 7.16 -51.93 -0.37 0.85 16 29 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.04 0.83 5.98 -51.93 -0.31 0.52 16 32 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 33 H 0.35 6.99 9.04 45.56 0.41 7.41 16 34 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.09 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.10 1.49 6.04 -51.93 -0.31 1.17 16 LS Contribution 310.60 15.07 4.68 4.68 Total: -1.00 -32.42 310.60 -7.88 -40.30 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -3.35 Total: 8.67 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -2.49 Total: -9.27 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: 0.69 Total: -47.89 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.35 Total: -12.85 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.59 Total: 16.75 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.47 Total: -0.39 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.42 -7.88 -40.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308132059.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.721 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds