Wall clock time and date at job start Tue Mar 31 2020 06:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30795 * 1 3 3 Si 1.86794 * 120.00368 * 2 1 4 4 H 1.48495 * 109.47548 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46949 * 299.99937 * 3 2 1 6 6 H 1.48505 * 109.47330 * 59.99499 * 3 2 1 7 7 C 1.40011 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00342 * 198.01529 * 7 2 1 9 9 C 1.40820 * 120.00021 * 18.00959 * 7 2 1 10 10 C 1.41054 * 120.08202 * 24.80060 * 9 7 2 11 11 C 1.36052 * 119.91151 * 179.97438 * 10 9 7 12 12 C 1.40338 * 120.09058 * 0.02562 * 11 10 9 13 13 C 1.47043 * 119.91774 * 179.97438 * 12 11 10 14 14 N 1.31782 * 126.29562 * 0.02562 * 13 12 11 15 15 N 1.28675 * 109.33974 * 179.97438 * 14 13 12 16 16 C 1.31683 * 109.38140 * 0.02562 * 15 14 13 17 17 C 1.47606 * 126.25900 * 179.97438 * 16 15 14 18 18 C 1.40141 * 120.57026 * 359.73698 * 17 16 15 19 19 C 1.38317 * 118.27523 * 179.78604 * 18 17 16 20 20 C 1.38382 * 119.32350 * 0.46997 * 19 18 17 21 21 N 1.31929 * 121.10438 * 359.77514 * 20 19 18 22 22 C 1.31678 * 121.89434 * 359.97438 * 21 20 19 23 23 O 1.34830 * 107.48273 * 359.73016 * 16 15 14 24 24 C 1.40341 * 120.16428 * 359.97438 * 12 11 10 25 25 C 1.36051 * 120.09044 * 0.02562 * 24 12 11 26 26 H 0.97000 * 119.99790 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.04230 * 359.95153 * 10 9 7 28 28 H 1.08001 * 119.95745 * 179.71861 * 11 10 9 29 29 H 1.08000 * 120.86081 * 0.02562 * 18 17 16 30 30 H 1.08001 * 120.33619 * 180.24078 * 19 18 17 31 31 H 1.07996 * 119.44345 * 179.78681 * 20 19 18 32 32 H 1.08000 * 119.72907 * 180.02562 * 22 21 20 33 33 H 1.08002 * 119.95622 * 180.02562 * 24 12 11 34 34 H 1.08002 * 120.04621 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6176 0.0000 4 1 3.7020 1.3463 -0.0006 5 1 1.8833 2.3963 -1.2126 6 1 1.8833 2.3965 1.2125 7 6 2.0080 -1.2125 0.0005 8 1 3.0483 -1.2354 0.2898 9 6 1.3557 -2.4024 -0.3760 10 6 0.2292 -2.3533 -1.2235 11 6 -0.3981 -3.5051 -1.5855 12 6 0.0738 -4.7407 -1.1165 13 6 -0.6074 -5.9831 -1.5096 14 7 -1.6638 -6.0796 -2.2916 15 7 -1.9881 -7.3184 -2.4186 16 6 -1.1532 -8.0622 -1.7231 17 6 -1.1836 -9.5334 -1.6073 18 6 -2.1684 -10.2802 -2.2677 19 6 -2.1496 -11.6564 -2.1300 20 6 -1.1747 -12.2456 -1.3444 21 7 -0.2624 -11.5172 -0.7297 22 6 -0.2346 -10.2048 -0.8330 23 8 -0.2623 -7.2347 -1.1406 24 6 1.1943 -4.7935 -0.2731 25 6 1.8269 -3.6462 0.0933 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1351 -1.4027 -1.5842 28 1 -1.2634 -3.4680 -2.2307 29 1 -2.9203 -9.7941 -2.8718 30 1 -2.8905 -12.2646 -2.6276 31 1 -1.1602 -13.3197 -1.2327 32 1 0.5285 -9.6428 -0.3149 33 1 1.5549 -5.7463 0.0856 34 1 2.6894 -3.6877 0.7421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322059513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:29 Heat of formation + Delta-G solvation = 84.790500 kcal Electronic energy + Delta-G solvation = -20916.572474 eV Core-core repulsion = 17587.717309 eV Total energy + Delta-G solvation = -3328.855165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.33417 -40.16050 -37.86043 -35.53646 -34.37393 -33.40571 -32.13142 -31.02708 -29.80977 -28.85749 -26.11035 -24.57110 -23.86494 -22.62114 -22.05490 -20.87794 -20.51024 -17.81201 -17.72640 -16.88470 -16.71273 -16.35980 -16.09598 -15.47814 -14.97282 -14.21991 -14.15748 -14.09093 -13.48882 -13.29338 -12.97983 -12.39791 -12.29105 -12.15268 -11.88626 -11.76624 -11.39896 -11.39239 -11.24924 -10.93046 -10.58065 -10.51506 -10.15997 -9.86568 -9.75419 -9.68798 -9.53859 -8.76164 -7.93295 -7.50847 -7.24171 -4.78454 0.37516 1.01011 1.57077 2.47718 2.67106 2.78761 2.84392 2.88042 2.90414 3.28628 3.59146 3.65940 4.06383 4.26057 4.34115 4.60585 4.67619 4.77843 5.11314 5.12226 5.32779 5.46745 5.71178 5.75647 5.95234 5.99075 6.02507 6.10369 6.26707 6.38102 6.59080 6.66659 6.80644 6.93895 7.23725 7.44999 7.63426 7.68397 7.70330 7.82555 8.18228 8.38398 8.50906 8.86122 9.64548 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.048590 B = 0.002769 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.113946 B =10109.108692 C =10602.981576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.069 3.931 3 Si 0.918 3.082 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.419 4.419 8 H 0.091 0.909 9 C 0.127 3.873 10 C -0.178 4.178 11 C -0.033 4.033 12 C -0.203 4.203 13 C 0.282 3.718 14 N -0.334 5.334 15 N -0.256 5.256 16 C 0.136 3.864 17 C -0.044 4.044 18 C -0.038 4.038 19 C -0.170 4.170 20 C 0.102 3.898 21 N -0.481 5.481 22 C 0.126 3.874 23 O -0.228 6.228 24 C -0.036 4.036 25 C -0.228 4.228 26 H 0.292 0.708 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.160 0.840 32 H 0.164 0.836 33 H 0.098 0.902 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.172 -11.943 -1.631 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.154 4.154 3 Si 0.741 3.259 4 H -0.178 1.178 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.446 4.446 8 H 0.109 0.891 9 C 0.123 3.877 10 C -0.197 4.197 11 C -0.052 4.052 12 C -0.208 4.208 13 C 0.084 3.916 14 N -0.183 5.183 15 N -0.105 5.105 16 C -0.072 4.072 17 C -0.048 4.048 18 C -0.066 4.066 19 C -0.190 4.190 20 C -0.055 4.055 21 N -0.189 5.189 22 C -0.033 4.033 23 O -0.110 6.110 24 C -0.056 4.056 25 C -0.248 4.248 26 H 0.103 0.897 27 H 0.144 0.856 28 H 0.125 0.875 29 H 0.167 0.833 30 H 0.161 0.839 31 H 0.177 0.823 32 H 0.181 0.819 33 H 0.117 0.883 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.770 -11.839 -1.891 12.119 hybrid contribution 0.516 0.820 0.298 1.013 sum -1.254 -11.019 -1.593 11.204 Atomic orbital electron populations 1.69807 1.08014 1.30680 1.29203 1.26209 0.94938 1.02380 0.91920 0.86074 0.81043 0.79636 0.79159 1.17848 1.19093 1.19408 1.19958 0.98620 0.91193 1.34784 0.89107 1.17880 0.90419 0.92242 0.87179 1.20967 0.99848 0.96964 1.01931 1.20403 0.97457 0.90647 0.96735 1.16686 1.03555 0.85288 1.15227 1.26012 0.91338 0.83343 0.90861 1.74911 1.13836 1.09246 1.20276 1.74553 1.21486 0.97574 1.16895 1.24594 0.90428 0.92903 0.99273 1.18258 0.99199 0.85519 1.01834 1.21656 0.96005 0.93529 0.95371 1.22091 1.00977 0.94772 1.01149 1.22954 0.89998 1.00509 0.92050 1.67733 1.23825 1.06628 1.20682 1.23011 0.96055 0.90189 0.94066 1.84844 1.48640 1.17552 1.60010 1.20384 0.93301 0.97467 0.94477 1.20649 1.04459 0.92332 1.07359 0.89706 0.85641 0.87512 0.83341 0.83909 0.82294 0.81875 0.88346 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.14 10.96 55.55 0.61 -16.53 16 2 C 0.07 1.50 5.12 -17.33 -0.09 1.41 16 3 Si 0.92 16.10 29.60 -169.99 -5.03 11.07 16 4 H -0.26 -4.43 7.11 56.52 0.40 -4.03 16 5 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16 6 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 7 C -0.42 -9.65 9.02 -37.94 -0.34 -9.99 16 8 H 0.09 1.97 7.91 -52.49 -0.42 1.55 16 9 C 0.13 3.03 5.57 -106.79 -0.60 2.43 16 10 C -0.18 -4.24 8.62 -39.30 -0.34 -4.58 16 11 C -0.03 -0.75 9.62 -39.58 -0.38 -1.13 16 12 C -0.20 -4.57 5.89 -104.75 -0.62 -5.19 16 13 C 0.28 6.17 7.96 -14.01 -0.11 6.06 16 14 N -0.33 -7.43 11.90 32.00 0.38 -7.04 16 15 N -0.26 -5.16 11.99 32.09 0.38 -4.77 16 16 C 0.14 2.47 8.00 -13.79 -0.11 2.36 16 17 C -0.04 -0.63 5.89 -104.83 -0.62 -1.25 16 18 C -0.04 -0.45 9.83 -38.84 -0.38 -0.83 16 19 C -0.17 -1.49 10.10 -39.50 -0.40 -1.89 16 20 C 0.10 0.96 11.17 -17.46 -0.20 0.77 16 21 N -0.48 -5.94 10.34 -12.87 -0.13 -6.07 16 22 C 0.13 1.67 10.90 -17.08 -0.19 1.49 16 23 O -0.23 -4.51 10.44 2.37 0.02 -4.48 16 24 C -0.04 -0.78 9.65 -39.58 -0.38 -1.16 16 25 C -0.23 -5.05 9.73 -39.30 -0.38 -5.43 16 26 H 0.29 5.90 8.30 -40.82 -0.34 5.56 16 27 H 0.13 3.03 6.16 -52.48 -0.32 2.70 16 28 H 0.11 2.36 7.84 -52.49 -0.41 1.95 16 29 H 0.15 1.63 7.94 -52.49 -0.42 1.21 16 30 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 31 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.16 2.04 7.94 -52.49 -0.42 1.62 16 33 H 0.10 1.88 7.91 -52.49 -0.42 1.46 16 34 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -27.01 311.81 -7.00 -34.00 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -2.80 Total: 6.08 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -5.13 Total: -16.95 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 1.24 Total: -34.42 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: 0.02 Total: -4.48 kcal Atomic # 14 Polarization: 16.10 SS G_CDS: -5.03 Total: 11.07 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.01 -7.00 -34.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322059513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.791 kcal (2) G-P(sol) polarization free energy of solvation -27.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds