Wall clock time and date at job start Tue Mar 31 2020 06:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30795 * 1 3 3 Si 1.86794 * 120.00368 * 2 1 4 4 H 1.48495 * 109.47548 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46949 * 299.99937 * 3 2 1 6 6 H 1.48505 * 109.47330 * 59.99499 * 3 2 1 7 7 C 1.40011 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00342 * 198.01529 * 7 2 1 9 9 C 1.40820 * 120.00021 * 18.00959 * 7 2 1 10 10 C 1.41054 * 120.08202 * 24.80060 * 9 7 2 11 11 C 1.36052 * 119.91151 * 179.97438 * 10 9 7 12 12 C 1.40338 * 120.09058 * 0.02562 * 11 10 9 13 13 C 1.47043 * 119.91774 * 179.97438 * 12 11 10 14 14 N 1.31782 * 126.29562 * 0.02562 * 13 12 11 15 15 N 1.28675 * 109.33974 * 179.97438 * 14 13 12 16 16 C 1.31683 * 109.38140 * 0.02562 * 15 14 13 17 17 C 1.47606 * 126.25900 * 179.97438 * 16 15 14 18 18 C 1.40141 * 120.57026 * 359.73698 * 17 16 15 19 19 C 1.38317 * 118.27523 * 179.78604 * 18 17 16 20 20 C 1.38382 * 119.32350 * 0.46997 * 19 18 17 21 21 N 1.31929 * 121.10438 * 359.77514 * 20 19 18 22 22 C 1.31678 * 121.89434 * 359.97438 * 21 20 19 23 23 O 1.34830 * 107.48273 * 359.73016 * 16 15 14 24 24 C 1.40341 * 120.16428 * 359.97438 * 12 11 10 25 25 C 1.36051 * 120.09044 * 0.02562 * 24 12 11 26 26 H 0.97000 * 119.99790 * 0.02562 * 1 2 3 27 27 H 1.08008 * 120.04230 * 359.95153 * 10 9 7 28 28 H 1.08001 * 119.95745 * 179.71861 * 11 10 9 29 29 H 1.08000 * 120.86081 * 0.02562 * 18 17 16 30 30 H 1.08001 * 120.33619 * 180.24078 * 19 18 17 31 31 H 1.07996 * 119.44345 * 179.78681 * 20 19 18 32 32 H 1.08000 * 119.72907 * 180.02562 * 22 21 20 33 33 H 1.08002 * 119.95622 * 180.02562 * 24 12 11 34 34 H 1.08002 * 120.04621 * 180.02562 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6176 0.0000 4 1 3.7020 1.3463 -0.0006 5 1 1.8833 2.3963 -1.2126 6 1 1.8833 2.3965 1.2125 7 6 2.0080 -1.2125 0.0005 8 1 3.0483 -1.2354 0.2898 9 6 1.3557 -2.4024 -0.3760 10 6 0.2292 -2.3533 -1.2235 11 6 -0.3981 -3.5051 -1.5855 12 6 0.0738 -4.7407 -1.1165 13 6 -0.6074 -5.9831 -1.5096 14 7 -1.6638 -6.0796 -2.2916 15 7 -1.9881 -7.3184 -2.4186 16 6 -1.1532 -8.0622 -1.7231 17 6 -1.1836 -9.5334 -1.6073 18 6 -2.1684 -10.2802 -2.2677 19 6 -2.1496 -11.6564 -2.1300 20 6 -1.1747 -12.2456 -1.3444 21 7 -0.2624 -11.5172 -0.7297 22 6 -0.2346 -10.2048 -0.8330 23 8 -0.2623 -7.2347 -1.1406 24 6 1.1943 -4.7935 -0.2731 25 6 1.8269 -3.6462 0.0933 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1351 -1.4027 -1.5842 28 1 -1.2634 -3.4680 -2.2307 29 1 -2.9203 -9.7941 -2.8718 30 1 -2.8905 -12.2646 -2.6276 31 1 -1.1602 -13.3197 -1.2327 32 1 0.5285 -9.6428 -0.3149 33 1 1.5549 -5.7463 0.0856 34 1 2.6894 -3.6877 0.7421 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322059513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:29 Heat of formation + Delta-G solvation = 67.195796 kcal Electronic energy + Delta-G solvation = -20917.335438 eV Core-core repulsion = 17587.717309 eV Total energy + Delta-G solvation = -3329.618129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.91428 -41.07703 -39.58981 -37.12654 -36.03202 -34.57858 -33.16827 -32.47522 -31.55794 -30.37732 -27.72377 -25.79828 -25.08487 -24.01472 -23.42837 -22.52131 -22.17554 -19.45355 -19.02871 -18.29516 -18.04025 -17.56864 -17.27079 -16.99642 -16.47267 -15.84876 -15.29522 -15.03135 -14.91732 -14.58653 -14.19482 -14.09932 -13.83567 -13.50936 -13.43472 -13.14237 -12.99299 -12.88623 -12.83294 -12.44749 -12.13244 -11.86626 -11.73969 -11.42275 -11.19324 -10.76814 -10.64001 -10.09584 -9.69923 -9.18014 -8.88131 -6.53621 -0.77890 0.06052 0.15869 1.00671 1.09564 1.18241 1.36972 1.41319 1.56836 1.68285 2.13134 2.58666 2.72758 2.76542 3.37710 3.45572 3.55920 3.70942 3.81005 3.92948 4.23426 4.25596 4.31370 4.37529 4.54296 4.61215 4.67438 4.89723 4.95420 5.02731 5.06340 5.08828 5.19004 5.50390 5.55096 5.71005 5.89803 5.93328 6.07931 6.43718 6.64728 6.75937 6.80009 7.27219 8.04590 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.048590 B = 0.002769 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.113946 B =10109.108692 C =10602.981576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.032 3.968 3 Si 0.992 3.008 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.444 4.444 8 H 0.099 0.901 9 C 0.101 3.899 10 C -0.195 4.195 11 C -0.039 4.039 12 C -0.214 4.214 13 C 0.266 3.734 14 N -0.353 5.353 15 N -0.286 5.286 16 C 0.167 3.833 17 C -0.082 4.082 18 C -0.038 4.038 19 C -0.153 4.153 20 C 0.115 3.885 21 N -0.500 5.500 22 C 0.127 3.873 23 O -0.228 6.228 24 C -0.035 4.035 25 C -0.237 4.237 26 H 0.301 0.699 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.152 0.848 30 H 0.187 0.813 31 H 0.202 0.798 32 H 0.162 0.838 33 H 0.121 0.879 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 -14.397 -1.527 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.173 1.173 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.470 4.470 8 H 0.117 0.883 9 C 0.097 3.903 10 C -0.214 4.214 11 C -0.058 4.058 12 C -0.218 4.218 13 C 0.066 3.934 14 N -0.201 5.201 15 N -0.133 5.133 16 C -0.042 4.042 17 C -0.086 4.086 18 C -0.064 4.064 19 C -0.172 4.172 20 C -0.042 4.042 21 N -0.209 5.209 22 C -0.032 4.032 23 O -0.111 6.111 24 C -0.055 4.055 25 C -0.256 4.256 26 H 0.112 0.888 27 H 0.133 0.867 28 H 0.124 0.876 29 H 0.170 0.830 30 H 0.205 0.795 31 H 0.218 0.782 32 H 0.179 0.821 33 H 0.139 0.861 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.627 -14.318 -1.799 14.522 hybrid contribution 0.344 1.161 0.240 1.234 sum -1.283 -13.157 -1.560 13.311 Atomic orbital electron populations 1.69841 1.09526 1.32137 1.29546 1.27082 0.95538 1.05413 0.90795 0.84987 0.79664 0.75009 0.79227 1.17334 1.18763 1.18730 1.20259 0.99177 0.91849 1.35687 0.88259 1.18207 0.90808 0.93519 0.87729 1.20930 1.00783 0.96732 1.02978 1.20439 0.97495 0.90988 0.96908 1.16806 1.04061 0.85421 1.15525 1.25839 0.91868 0.83799 0.91901 1.74832 1.14114 1.10610 1.20507 1.74507 1.22814 0.97016 1.18971 1.25479 0.88260 0.94248 0.96222 1.18417 1.01842 0.83305 1.05049 1.21904 0.95081 0.94865 0.94597 1.22541 1.01158 0.93520 0.99979 1.23762 0.88339 1.02253 0.89802 1.67824 1.25256 1.05984 1.21819 1.23000 0.95701 0.90852 0.93690 1.84840 1.49019 1.17150 1.60078 1.20593 0.92717 0.98317 0.93880 1.20863 1.05120 0.91989 1.07655 0.88804 0.86710 0.87614 0.83019 0.79539 0.78169 0.82117 0.86072 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.69 10.96 21.84 0.24 -36.45 16 2 C 0.03 1.42 5.12 85.28 0.44 1.86 16 3 Si 0.99 32.76 29.60 68.60 2.03 34.79 16 4 H -0.25 -7.99 7.11 99.48 0.71 -7.28 16 5 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 6 H -0.26 -8.35 7.11 99.48 0.71 -7.65 16 7 C -0.44 -20.82 9.02 23.33 0.21 -20.61 16 8 H 0.10 4.33 7.91 -2.91 -0.02 4.31 16 9 C 0.10 4.99 5.57 -21.27 -0.12 4.88 16 10 C -0.19 -9.75 8.62 22.45 0.19 -9.56 16 11 C -0.04 -1.86 9.62 22.27 0.21 -1.65 16 12 C -0.21 -9.94 5.89 -19.95 -0.12 -10.06 16 13 C 0.27 11.95 7.96 87.01 0.69 12.64 16 14 N -0.35 -16.15 11.90 -166.17 -1.98 -18.13 16 15 N -0.29 -11.70 11.99 -166.00 -1.99 -13.69 16 16 C 0.17 6.06 8.00 87.19 0.70 6.76 16 17 C -0.08 -2.25 5.89 -20.00 -0.12 -2.37 16 18 C -0.04 -0.78 9.83 22.75 0.22 -0.55 16 19 C -0.15 -1.97 10.10 22.32 0.23 -1.75 16 20 C 0.12 1.64 11.17 84.71 0.95 2.59 16 21 N -0.50 -10.93 10.34 -194.62 -2.01 -12.94 16 22 C 0.13 3.17 10.90 85.06 0.93 4.10 16 23 O -0.23 -9.14 10.44 -14.44 -0.15 -9.29 16 24 C -0.04 -1.53 9.65 22.27 0.21 -1.32 16 25 C -0.24 -10.65 9.73 22.45 0.22 -10.43 16 26 H 0.30 12.40 8.30 -92.71 -0.77 11.63 16 27 H 0.12 5.87 6.16 -2.91 -0.02 5.85 16 28 H 0.11 4.97 7.84 -2.91 -0.02 4.94 16 29 H 0.15 3.02 7.94 -2.91 -0.02 2.99 16 30 H 0.19 0.84 8.06 -2.91 -0.02 0.81 16 31 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.16 3.94 7.94 -2.91 -0.02 3.92 16 33 H 0.12 4.59 7.91 -2.91 -0.02 4.57 16 34 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -60.99 311.81 2.13 -58.86 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 1.15 Total: 22.32 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 4.85 Total: -25.47 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -5.74 Total: -81.21 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.15 Total: -9.29 kcal Atomic # 14 Polarization: 32.76 SS G_CDS: 2.03 Total: 34.79 kcal Total: -60.99 2.13 -58.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322059513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.054 kcal (2) G-P(sol) polarization free energy of solvation -60.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds