Wall clock time and date at job start Tue Mar 31 2020 06:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86803 * 119.99817 * 2 1 4 4 H 1.48501 * 109.47408 * 270.00409 * 3 2 1 5 5 H 1.48500 * 109.47057 * 30.00097 * 3 2 1 6 6 H 1.48500 * 109.47329 * 149.99960 * 3 2 1 7 7 C 1.40036 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00278 * 197.98453 * 7 2 1 9 9 C 1.40829 * 119.99698 * 17.98027 * 7 2 1 10 10 C 1.41047 * 120.08355 * 24.78692 * 9 7 2 11 11 C 1.36073 * 119.90449 * 180.02562 * 10 9 7 12 12 C 1.40321 * 120.09347 * 359.97438 * 11 10 9 13 13 C 1.47085 * 119.91433 * 180.02562 * 12 11 10 14 14 N 1.31829 * 126.29403 * 359.97374 * 13 12 11 15 15 N 1.28674 * 109.32262 * 179.74826 * 14 13 12 16 16 C 1.31631 * 109.38294 * 0.44855 * 15 14 13 17 17 C 1.47653 * 126.25379 * 179.81893 * 16 15 14 18 18 C 1.39630 * 119.75200 * 359.69155 * 17 16 15 19 19 C 1.38369 * 119.04588 * 180.02562 * 18 17 16 20 20 C 1.38808 * 118.52414 * 0.02562 * 19 18 17 21 21 C 1.38381 * 119.41522 * 0.26875 * 20 19 18 22 22 N 1.31652 * 120.92598 * 359.43117 * 21 20 19 23 23 O 1.34846 * 107.49039 * 359.55925 * 16 15 14 24 24 C 1.40320 * 120.17173 * 0.27640 * 12 11 10 25 25 C 1.36074 * 120.08831 * 359.43855 * 24 12 11 26 26 H 0.96994 * 120.00087 * 359.97438 * 1 2 3 27 27 H 1.07992 * 120.04734 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.94958 * 180.02562 * 11 10 9 29 29 H 1.08001 * 120.47836 * 0.04404 * 18 17 16 30 30 H 1.07996 * 120.73872 * 179.97438 * 19 18 17 31 31 H 1.08003 * 120.28866 * 180.02562 * 20 19 18 32 32 H 1.08000 * 119.53944 * 179.72578 * 21 20 19 33 33 H 1.07999 * 119.95324 * 179.70138 * 24 12 11 34 34 H 1.07995 * 120.04650 * 180.29054 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4892 2.0466 -1.4001 5 1 1.4392 2.6527 0.7001 6 1 3.5393 1.4403 0.7000 7 6 2.0081 -1.2127 -0.0005 8 1 3.0485 -1.2356 0.2882 9 6 1.3555 -2.4024 -0.3776 10 6 0.2286 -2.3528 -1.2242 11 6 -0.3995 -3.5046 -1.5858 12 6 0.0729 -4.7403 -1.1180 13 6 -0.6086 -5.9828 -1.5118 14 7 -1.6664 -6.0789 -2.2927 15 7 -1.9873 -7.3180 -2.4242 16 6 -1.1549 -8.0614 -1.7263 17 6 -1.1847 -9.5331 -1.6115 18 6 -2.1712 -10.2605 -2.2804 19 6 -2.1858 -11.6390 -2.1622 20 6 -1.2147 -12.2475 -1.3791 21 6 -0.2697 -11.4653 -0.7386 22 7 -0.2732 -10.1555 -0.8712 23 8 -0.2664 -7.2336 -1.1400 24 6 1.1906 -4.7933 -0.2713 25 6 1.8277 -3.6465 0.0901 26 1 -0.4850 0.8400 0.0004 27 1 -0.1359 -1.4022 -1.5844 28 1 -1.2622 -3.4675 -2.2344 29 1 -2.9121 -9.7544 -2.8816 30 1 -2.9366 -12.2284 -2.6674 31 1 -1.1991 -13.3216 -1.2674 32 1 0.4841 -11.9363 -0.1252 33 1 1.5483 -5.7459 0.0905 34 1 2.6906 -3.6885 0.7380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322708126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:47 Heat of formation + Delta-G solvation = 88.020462 kcal Electronic energy + Delta-G solvation = -20914.540626 eV Core-core repulsion = 17585.825522 eV Total energy + Delta-G solvation = -3328.715104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.26798 -40.16250 -37.81095 -35.45890 -34.30840 -32.92938 -32.55277 -30.98609 -29.76014 -28.88068 -26.12214 -24.53212 -23.81564 -22.58954 -22.05506 -20.83719 -20.47020 -17.91867 -17.68467 -16.64707 -16.62361 -16.30228 -15.95285 -15.46744 -14.90414 -14.25074 -14.17235 -14.10151 -13.45835 -13.37514 -12.93017 -12.33186 -12.17613 -12.12214 -11.81054 -11.70276 -11.37998 -11.33837 -11.18963 -10.89442 -10.49375 -10.30125 -10.11656 -9.99596 -9.74781 -9.66637 -9.50744 -8.76648 -7.88222 -7.48074 -7.20352 -4.74544 0.40174 1.04077 1.59855 2.47867 2.73017 2.81604 2.87093 2.90303 2.92654 3.32166 3.61937 3.70996 3.78993 4.30156 4.55125 4.58975 4.79009 4.83630 5.05428 5.22590 5.37249 5.52104 5.71374 5.79482 5.93902 6.00500 6.06221 6.14899 6.29492 6.40436 6.63091 6.71048 6.85512 6.98791 7.28420 7.50076 7.67709 7.68634 7.75186 7.86968 8.22319 8.42584 8.55399 8.89690 9.68639 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.048917 B = 0.002776 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.266290 B =10083.029547 C =10573.122707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.421 4.421 8 H 0.090 0.910 9 C 0.128 3.872 10 C -0.178 4.178 11 C -0.033 4.033 12 C -0.202 4.202 13 C 0.281 3.719 14 N -0.333 5.333 15 N -0.247 5.247 16 C 0.139 3.861 17 C 0.219 3.781 18 C -0.129 4.129 19 C -0.073 4.073 20 C -0.169 4.169 21 C 0.106 3.894 22 N -0.467 5.467 23 O -0.212 6.212 24 C -0.035 4.035 25 C -0.229 4.229 26 H 0.292 0.708 27 H 0.126 0.874 28 H 0.107 0.893 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.099 0.901 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 -13.987 -1.547 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.378 5.378 2 C -0.154 4.154 3 Si 0.742 3.258 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.447 4.447 8 H 0.108 0.892 9 C 0.124 3.876 10 C -0.198 4.198 11 C -0.052 4.052 12 C -0.207 4.207 13 C 0.083 3.917 14 N -0.183 5.183 15 N -0.099 5.099 16 C -0.069 4.069 17 C 0.082 3.918 18 C -0.150 4.150 19 C -0.099 4.099 20 C -0.190 4.190 21 C -0.053 4.053 22 N -0.177 5.177 23 O -0.093 6.093 24 C -0.055 4.055 25 C -0.248 4.248 26 H 0.103 0.897 27 H 0.144 0.856 28 H 0.125 0.875 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.118 0.882 34 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.881 -12.966 -1.874 13.235 hybrid contribution 0.605 -0.199 0.454 0.783 sum -1.276 -13.165 -1.419 13.303 Atomic orbital electron populations 1.69792 1.08003 1.30720 1.29291 1.26203 0.94930 1.02326 0.91935 0.86109 0.80511 0.79282 0.79905 1.18663 1.19782 1.18091 1.19932 0.98609 0.91210 1.34997 0.89160 1.17879 0.90431 0.92218 0.87116 1.20965 0.99837 0.96952 1.01999 1.20408 0.97438 0.90636 0.96741 1.16695 1.03601 0.85281 1.15088 1.26071 0.91157 0.83744 0.90681 1.74944 1.13869 1.08922 1.20547 1.74537 1.21214 0.97594 1.16508 1.24413 0.90911 0.92081 0.99503 1.17757 0.92774 0.86128 0.95146 1.22001 0.98846 0.94433 0.99750 1.21547 0.97846 0.93920 0.96548 1.22311 0.96355 1.01729 0.98610 1.22767 0.97392 0.88274 0.96832 1.67649 1.22856 1.11670 1.15514 1.84947 1.48305 1.17021 1.58998 1.20414 0.93230 0.97547 0.94313 1.20649 1.04390 0.92334 1.07475 0.89692 0.85637 0.87483 0.83196 0.83914 0.84272 0.82021 0.88239 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.43 10.96 55.55 0.61 -16.82 16 2 C 0.07 1.54 5.13 -17.33 -0.09 1.45 16 3 Si 0.92 16.38 29.60 -169.99 -5.03 11.35 16 4 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 5 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 6 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 7 C -0.42 -9.88 9.02 -37.93 -0.34 -10.22 16 8 H 0.09 1.99 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.11 5.57 -106.79 -0.60 2.52 16 10 C -0.18 -4.34 8.62 -39.30 -0.34 -4.67 16 11 C -0.03 -0.77 9.62 -39.58 -0.38 -1.15 16 12 C -0.20 -4.73 5.89 -104.74 -0.62 -5.35 16 13 C 0.28 6.46 7.96 -13.97 -0.11 6.35 16 14 N -0.33 -7.62 11.90 32.00 0.38 -7.24 16 15 N -0.25 -5.15 11.89 32.10 0.38 -4.77 16 16 C 0.14 2.75 8.11 -13.80 -0.11 2.64 16 17 C 0.22 3.51 6.75 -83.04 -0.56 2.95 16 18 C -0.13 -1.58 9.74 -39.01 -0.38 -1.96 16 19 C -0.07 -0.64 10.16 -39.32 -0.40 -1.04 16 20 C -0.17 -1.38 10.11 -39.32 -0.40 -1.77 16 21 C 0.11 1.13 11.17 -17.58 -0.20 0.93 16 22 N -0.47 -7.14 10.31 -9.85 -0.10 -7.24 16 23 O -0.21 -4.64 10.65 2.54 0.03 -4.61 16 24 C -0.04 -0.79 9.65 -39.58 -0.38 -1.17 16 25 C -0.23 -5.23 9.73 -39.29 -0.38 -5.61 16 26 H 0.29 6.02 8.29 -40.82 -0.34 5.68 16 27 H 0.13 3.07 6.16 -52.49 -0.32 2.75 16 28 H 0.11 2.41 7.84 -52.49 -0.41 2.00 16 29 H 0.15 1.72 7.85 -52.49 -0.41 1.31 16 30 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 31 H 0.14 0.65 8.06 -52.48 -0.42 0.22 16 32 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.10 2.05 7.91 -52.49 -0.42 1.64 16 34 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -28.36 312.06 -7.12 -35.48 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -2.80 Total: 5.26 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: -5.28 Total: -16.10 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 1.27 Total: -36.07 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: 0.03 Total: -4.61 kcal Atomic # 14 Polarization: 16.38 SS G_CDS: -5.03 Total: 11.35 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.36 -7.12 -35.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322708126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.496 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds