Wall clock time and date at job start Tue Mar 31 2020 06:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86803 * 119.99817 * 2 1 4 4 H 1.48501 * 109.47408 * 270.00409 * 3 2 1 5 5 H 1.48500 * 109.47057 * 30.00097 * 3 2 1 6 6 H 1.48500 * 109.47329 * 149.99960 * 3 2 1 7 7 C 1.40036 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00278 * 197.98453 * 7 2 1 9 9 C 1.40829 * 119.99698 * 17.98027 * 7 2 1 10 10 C 1.41047 * 120.08355 * 24.78692 * 9 7 2 11 11 C 1.36073 * 119.90449 * 180.02562 * 10 9 7 12 12 C 1.40321 * 120.09347 * 359.97438 * 11 10 9 13 13 C 1.47085 * 119.91433 * 180.02562 * 12 11 10 14 14 N 1.31829 * 126.29403 * 359.97374 * 13 12 11 15 15 N 1.28674 * 109.32262 * 179.74826 * 14 13 12 16 16 C 1.31631 * 109.38294 * 0.44855 * 15 14 13 17 17 C 1.47653 * 126.25379 * 179.81893 * 16 15 14 18 18 C 1.39630 * 119.75200 * 359.69155 * 17 16 15 19 19 C 1.38369 * 119.04588 * 180.02562 * 18 17 16 20 20 C 1.38808 * 118.52414 * 0.02562 * 19 18 17 21 21 C 1.38381 * 119.41522 * 0.26875 * 20 19 18 22 22 N 1.31652 * 120.92598 * 359.43117 * 21 20 19 23 23 O 1.34846 * 107.49039 * 359.55925 * 16 15 14 24 24 C 1.40320 * 120.17173 * 0.27640 * 12 11 10 25 25 C 1.36074 * 120.08831 * 359.43855 * 24 12 11 26 26 H 0.96994 * 120.00087 * 359.97438 * 1 2 3 27 27 H 1.07992 * 120.04734 * 359.97438 * 10 9 7 28 28 H 1.08002 * 119.94958 * 180.02562 * 11 10 9 29 29 H 1.08001 * 120.47836 * 0.04404 * 18 17 16 30 30 H 1.07996 * 120.73872 * 179.97438 * 19 18 17 31 31 H 1.08003 * 120.28866 * 180.02562 * 20 19 18 32 32 H 1.08000 * 119.53944 * 179.72578 * 21 20 19 33 33 H 1.07999 * 119.95324 * 179.70138 * 24 12 11 34 34 H 1.07995 * 120.04650 * 180.29054 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4892 2.0466 -1.4001 5 1 1.4392 2.6527 0.7001 6 1 3.5393 1.4403 0.7000 7 6 2.0081 -1.2127 -0.0005 8 1 3.0485 -1.2356 0.2882 9 6 1.3555 -2.4024 -0.3776 10 6 0.2286 -2.3528 -1.2242 11 6 -0.3995 -3.5046 -1.5858 12 6 0.0729 -4.7403 -1.1180 13 6 -0.6086 -5.9828 -1.5118 14 7 -1.6664 -6.0789 -2.2927 15 7 -1.9873 -7.3180 -2.4242 16 6 -1.1549 -8.0614 -1.7263 17 6 -1.1847 -9.5331 -1.6115 18 6 -2.1712 -10.2605 -2.2804 19 6 -2.1858 -11.6390 -2.1622 20 6 -1.2147 -12.2475 -1.3791 21 6 -0.2697 -11.4653 -0.7386 22 7 -0.2732 -10.1555 -0.8712 23 8 -0.2664 -7.2336 -1.1400 24 6 1.1906 -4.7933 -0.2713 25 6 1.8277 -3.6465 0.0901 26 1 -0.4850 0.8400 0.0004 27 1 -0.1359 -1.4022 -1.5844 28 1 -1.2622 -3.4675 -2.2344 29 1 -2.9121 -9.7544 -2.8816 30 1 -2.9366 -12.2284 -2.6674 31 1 -1.1991 -13.3216 -1.2674 32 1 0.4841 -11.9363 -0.1252 33 1 1.5483 -5.7459 0.0905 34 1 2.6906 -3.6885 0.7380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322708126.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:47 Heat of formation + Delta-G solvation = 68.584836 kcal Electronic energy + Delta-G solvation = -20915.383418 eV Core-core repulsion = 17585.825522 eV Total energy + Delta-G solvation = -3329.557896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.92471 -41.07746 -39.59975 -37.13142 -36.02772 -34.10350 -33.55245 -32.49774 -31.57095 -30.40992 -27.76738 -25.84323 -25.00535 -24.01017 -23.44902 -22.53965 -22.20149 -19.46128 -19.14828 -18.30912 -17.97459 -17.51070 -17.12233 -16.78123 -16.46019 -15.85521 -15.38392 -15.10841 -15.04082 -14.58453 -14.12069 -14.10573 -13.83476 -13.51951 -13.43715 -13.05726 -12.93596 -12.91528 -12.81332 -12.45216 -12.11732 -11.78908 -11.59577 -11.42269 -11.12266 -10.96370 -10.66772 -10.08325 -9.71184 -9.20510 -8.88560 -6.54477 -0.77713 0.06669 0.24450 0.98106 1.08181 1.21075 1.35641 1.40988 1.55208 1.67206 2.13168 2.51658 2.58228 2.75656 3.28623 3.54736 3.72582 3.81271 4.00556 4.04705 4.20755 4.26576 4.31432 4.36622 4.51704 4.59748 4.76202 4.88405 4.94489 5.05354 5.08092 5.14516 5.18267 5.49382 5.61680 5.69908 5.88452 5.92555 6.06811 6.42535 6.63660 6.74832 6.77049 7.23673 8.04377 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.048917 B = 0.002776 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.266290 B =10083.029547 C =10573.122707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.032 3.968 3 Si 0.994 3.006 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.251 1.251 7 C -0.443 4.443 8 H 0.100 0.900 9 C 0.102 3.898 10 C -0.194 4.194 11 C -0.037 4.037 12 C -0.215 4.215 13 C 0.264 3.736 14 N -0.349 5.349 15 N -0.271 5.271 16 C 0.162 3.838 17 C 0.165 3.835 18 C -0.124 4.124 19 C -0.065 4.065 20 C -0.136 4.136 21 C 0.095 3.905 22 N -0.504 5.504 23 O -0.222 6.222 24 C -0.036 4.036 25 C -0.236 4.236 26 H 0.301 0.699 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.150 0.850 30 H 0.187 0.813 31 H 0.190 0.810 32 H 0.192 0.808 33 H 0.115 0.885 34 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.046 -16.737 -1.312 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.188 4.188 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.174 1.174 7 C -0.469 4.469 8 H 0.118 0.882 9 C 0.098 3.902 10 C -0.213 4.213 11 C -0.057 4.057 12 C -0.220 4.220 13 C 0.063 3.937 14 N -0.198 5.198 15 N -0.121 5.121 16 C -0.046 4.046 17 C 0.030 3.970 18 C -0.146 4.146 19 C -0.090 4.090 20 C -0.156 4.156 21 C -0.065 4.065 22 N -0.215 5.215 23 O -0.104 6.104 24 C -0.056 4.056 25 C -0.256 4.256 26 H 0.113 0.887 27 H 0.135 0.865 28 H 0.126 0.874 29 H 0.168 0.832 30 H 0.205 0.795 31 H 0.207 0.793 32 H 0.209 0.791 33 H 0.133 0.867 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.654 -15.730 -1.657 15.903 hybrid contribution 0.443 0.233 0.390 0.635 sum -1.211 -15.496 -1.267 15.595 Atomic orbital electron populations 1.69827 1.09551 1.32262 1.29311 1.27104 0.95553 1.05428 0.90764 0.85002 0.79196 0.74587 0.79929 1.18386 1.18982 1.17373 1.20255 0.99195 0.91824 1.35607 0.88209 1.18203 0.90869 0.93415 0.87729 1.20942 1.00692 0.96740 1.02952 1.20443 0.97515 0.90828 0.96892 1.16818 1.04133 0.85469 1.15529 1.25965 0.91804 0.84069 0.91825 1.74853 1.14004 1.10248 1.20693 1.74474 1.22293 0.96984 1.18310 1.25494 0.88774 0.93767 0.96615 1.17812 0.95878 0.84207 0.99121 1.22182 0.97534 0.96139 0.98757 1.22096 0.98632 0.92292 0.95980 1.22896 0.93655 1.03902 0.95112 1.23442 0.98847 0.86871 0.97319 1.67506 1.23478 1.14267 1.16259 1.84937 1.49059 1.17001 1.59386 1.20567 0.92891 0.98168 0.94000 1.20851 1.05002 0.91971 1.07744 0.88727 0.86483 0.87396 0.83204 0.79528 0.79313 0.79076 0.86736 0.86086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -37.05 10.96 21.84 0.24 -36.81 16 2 C 0.03 1.44 5.13 85.29 0.44 1.88 16 3 Si 0.99 33.12 29.60 68.60 2.03 35.15 16 4 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 5 H -0.27 -8.46 7.11 99.48 0.71 -7.75 16 6 H -0.25 -8.02 7.11 99.48 0.71 -7.31 16 7 C -0.44 -21.14 9.02 23.34 0.21 -20.92 16 8 H 0.10 4.42 7.91 -2.91 -0.02 4.40 16 9 C 0.10 5.14 5.57 -21.27 -0.12 5.02 16 10 C -0.19 -9.91 8.62 22.46 0.19 -9.72 16 11 C -0.04 -1.84 9.62 22.27 0.21 -1.63 16 12 C -0.21 -10.54 5.89 -19.94 -0.12 -10.66 16 13 C 0.26 12.68 7.96 87.02 0.69 13.37 16 14 N -0.35 -16.75 11.90 -166.17 -1.98 -18.72 16 15 N -0.27 -11.76 11.89 -166.00 -1.97 -13.74 16 16 C 0.16 6.63 8.11 87.21 0.71 7.34 16 17 C 0.17 5.25 6.75 41.81 0.28 5.53 16 18 C -0.12 -2.82 9.74 22.64 0.22 -2.60 16 19 C -0.06 -0.82 10.16 22.44 0.23 -0.60 16 20 C -0.14 -1.46 10.11 22.44 0.23 -1.23 16 21 C 0.09 1.68 11.17 84.75 0.95 2.63 16 22 N -0.50 -14.89 10.31 -185.08 -1.91 -16.80 16 23 O -0.22 -10.15 10.65 -13.83 -0.15 -10.29 16 24 C -0.04 -1.69 9.65 22.27 0.21 -1.47 16 25 C -0.24 -11.08 9.73 22.46 0.22 -10.86 16 26 H 0.30 12.58 8.29 -92.71 -0.77 11.81 16 27 H 0.12 6.06 6.16 -2.91 -0.02 6.04 16 28 H 0.11 5.18 7.84 -2.91 -0.02 5.16 16 29 H 0.15 3.29 7.85 -2.91 -0.02 3.27 16 30 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 31 H 0.19 0.27 8.06 -2.91 -0.02 0.24 16 32 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.11 4.84 7.91 -2.91 -0.02 4.82 16 34 H 0.12 5.09 8.06 -2.91 -0.02 5.07 16 Total: -1.00 -66.34 312.06 1.97 -64.37 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 1.15 Total: 20.77 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 4.56 Total: -23.93 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -5.62 Total: -86.07 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.15 Total: -10.29 kcal Atomic # 14 Polarization: 33.12 SS G_CDS: 2.03 Total: 35.15 kcal Total: -66.34 1.97 -64.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322708126.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.960 kcal (2) G-P(sol) polarization free energy of solvation -66.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds