Wall clock time and date at job start Tue Mar 31 2020 06:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00362 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72203 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72051 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72086 * 3 2 1 7 7 C 1.38803 * 119.99820 * 179.72030 * 2 1 3 8 8 H 1.08001 * 120.00210 * 0.28248 * 7 2 1 9 9 S 1.76201 * 120.00168 * 180.27733 * 7 2 1 10 10 C 1.80999 * 100.00238 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47143 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00265 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00194 * 180.02562 * 11 10 9 14 14 C 1.47428 * 125.64651 * 0.02562 * 13 11 10 15 15 C 1.54909 * 104.83209 * 155.83724 * 14 13 11 16 16 C 1.55147 * 101.58143 * 37.01066 * 15 14 13 17 17 C 1.47023 * 125.65102 * 179.71443 * 13 11 10 18 18 H 1.08993 * 109.88209 * 300.50900 * 17 13 11 19 19 C 1.50700 * 109.87978 * 61.67924 * 17 13 11 20 20 N 1.31795 * 119.12391 * 43.27421 * 19 17 13 21 21 C 1.32335 * 120.81524 * 179.76166 * 20 19 17 22 22 C 1.38597 * 119.10719 * 0.50300 * 21 20 19 23 23 C 1.38596 * 118.39653 * 359.75025 * 22 21 20 24 24 N 1.31797 * 119.12001 * 223.54755 * 19 17 13 25 25 H 0.97004 * 119.99711 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47342 * 300.00378 * 10 9 7 27 27 H 1.09001 * 109.47104 * 59.99990 * 10 9 7 28 28 H 1.08997 * 110.37223 * 274.68215 * 14 13 11 29 29 H 1.09007 * 110.36755 * 36.88804 * 14 13 11 30 30 H 1.09004 * 111.00430 * 155.08829 * 15 14 13 31 31 H 1.08999 * 111.00144 * 278.89877 * 15 14 13 32 32 H 1.09008 * 110.72317 * 82.86191 * 16 15 14 33 33 H 1.08998 * 110.72128 * 205.95407 * 16 15 14 34 34 H 1.08001 * 120.44530 * 180.27925 * 21 20 19 35 35 H 1.07997 * 120.80307 * 179.77069 * 22 21 20 36 36 H 1.08003 * 120.44934 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.5037 2.0429 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0102 -1.2021 0.0059 8 1 1.4702 -2.1374 0.0058 9 16 3.7722 -1.2022 0.0133 10 6 4.0865 -2.9846 0.0182 11 6 5.5729 -3.2326 0.0255 12 8 6.3439 -2.2965 0.0268 13 7 6.0455 -4.4948 0.0296 14 6 5.2249 -5.7196 0.0271 15 6 6.1423 -6.8103 -0.5797 16 6 7.5228 -6.4203 0.0112 17 6 7.4649 -4.8783 0.0309 18 1 7.9585 -4.4756 -0.8534 19 6 8.1349 -4.3589 1.2768 20 7 7.5131 -4.4703 2.4335 21 6 8.0725 -4.0299 3.5491 22 6 9.3235 -3.4365 3.4873 23 6 9.9435 -3.3328 2.2521 24 7 9.3248 -3.8005 1.1799 25 1 -0.4850 0.8401 -0.0004 26 1 3.6398 -3.4299 0.9071 27 1 3.6473 -3.4335 -0.8728 28 1 4.9392 -5.9870 1.0444 29 1 4.3379 -5.5806 -0.5911 30 1 5.8413 -7.8037 -0.2467 31 1 6.1519 -6.7517 -1.6681 32 1 7.6373 -6.8186 1.0194 33 1 8.3303 -6.7679 -0.6332 34 1 7.5595 -4.1283 4.4944 35 1 9.8037 -3.0642 4.3801 36 1 10.9183 -2.8759 2.1657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334246631.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:15 Heat of formation + Delta-G solvation = 20.923449 kcal Electronic energy + Delta-G solvation = -20868.230371 eV Core-core repulsion = 17672.049674 eV Total energy + Delta-G solvation = -3196.180697 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27030 -39.59866 -37.22512 -33.75397 -32.78375 -32.42553 -31.78915 -29.48432 -28.41081 -25.60175 -24.67856 -24.46298 -22.76346 -21.32596 -19.43418 -17.77662 -17.75752 -17.07122 -16.52632 -16.12465 -15.46010 -14.99823 -14.89208 -14.84324 -14.28213 -13.95385 -13.69685 -13.47982 -13.33212 -12.97311 -12.79327 -12.36471 -12.00793 -11.82385 -11.45035 -11.23696 -11.07876 -10.99749 -10.89877 -10.84190 -10.58506 -9.85860 -9.72686 -9.41277 -9.29225 -8.98910 -8.60654 -8.47080 -6.89886 -6.27524 -3.98756 0.78228 1.03563 2.68034 2.96534 3.18284 3.34011 3.51632 3.57878 3.71781 3.77082 4.13667 4.33060 4.36059 4.47635 4.49472 4.73350 4.78409 4.88793 4.99160 5.09721 5.11671 5.19660 5.25133 5.39762 5.51715 5.57774 5.61321 5.66836 5.76969 5.87444 6.00812 6.05631 6.25345 6.35132 6.92530 7.60793 7.95757 8.04327 8.43274 8.48029 9.18905 10.81772 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.019177 B = 0.004526 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.757661 B = 6184.563101 C = 7100.576252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.519 4.519 8 H 0.088 0.912 9 S -0.144 6.144 10 C -0.114 4.114 11 C 0.550 3.450 12 O -0.516 6.516 13 N -0.609 5.609 14 C 0.101 3.899 15 C -0.129 4.129 16 C -0.117 4.117 17 C 0.207 3.793 18 H 0.102 0.898 19 C 0.322 3.678 20 N -0.502 5.502 21 C 0.149 3.851 22 C -0.234 4.234 23 C 0.149 3.851 24 N -0.509 5.509 25 H 0.270 0.730 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.167 0.833 35 H 0.146 0.854 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.811 -15.193 4.312 23.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.667 4.667 8 H 0.106 0.894 9 S 0.082 5.918 10 C -0.265 4.265 11 C 0.338 3.662 12 O -0.390 6.390 13 N -0.345 5.345 14 C -0.021 4.021 15 C -0.167 4.167 16 C -0.156 4.156 17 C 0.101 3.899 18 H 0.120 0.880 19 C 0.053 3.947 20 N -0.216 5.216 21 C -0.017 4.017 22 C -0.256 4.256 23 C -0.018 4.018 24 N -0.223 5.223 25 H 0.080 0.920 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.184 0.816 35 H 0.164 0.836 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 18.282 -13.928 3.489 23.247 hybrid contribution -0.363 0.201 1.005 1.088 sum 17.919 -13.727 4.494 23.016 Atomic orbital electron populations 1.69938 1.05881 1.27720 1.48190 1.24690 0.94423 0.98880 0.93200 0.86749 0.81865 0.83358 0.79965 1.19176 1.19929 1.16045 1.22310 0.88202 0.97540 1.58647 0.89360 1.84792 1.09339 1.00205 1.97419 1.23233 0.93494 1.04056 1.05692 1.20006 0.90593 0.80595 0.74978 1.90713 1.58779 1.41287 1.48231 1.48397 1.05269 1.05765 1.75103 1.22352 0.94558 0.83654 1.01587 1.22783 0.94032 0.98818 1.01102 1.22632 0.98749 0.91638 1.02588 1.20145 0.82525 0.94973 0.92282 0.88042 1.23314 0.87526 0.90394 0.93492 1.68157 1.35546 1.18904 0.98958 1.23243 0.91519 0.89892 0.97077 1.22890 0.98536 1.03516 1.00679 1.23188 0.98994 0.91846 0.87739 1.68164 1.10642 1.10315 1.33202 0.91961 0.88482 0.88522 0.90790 0.89941 0.89441 0.90126 0.90276 0.89457 0.81594 0.83615 0.81587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.84 13.97 55.49 0.78 -26.07 16 2 C 0.10 2.87 5.50 -17.43 -0.10 2.77 16 3 Si 0.86 22.20 27.74 -169.99 -4.72 17.49 16 4 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.24 -6.17 6.74 56.52 0.38 -5.79 16 7 C -0.52 -15.24 10.04 30.94 0.31 -14.93 16 8 H 0.09 2.69 8.03 -52.49 -0.42 2.27 16 9 S -0.14 -3.79 18.55 -107.50 -1.99 -5.78 16 10 C -0.11 -2.36 5.16 36.00 0.19 -2.18 16 11 C 0.55 10.85 7.66 -10.99 -0.08 10.77 16 12 O -0.52 -12.15 15.69 5.56 0.09 -12.07 16 13 N -0.61 -9.20 2.86 -164.33 -0.47 -9.67 16 14 C 0.10 1.12 6.69 -2.53 -0.02 1.10 16 15 C -0.13 -1.02 7.08 -24.59 -0.17 -1.19 16 16 C -0.12 -1.07 6.46 -24.91 -0.16 -1.23 16 17 C 0.21 2.80 3.26 -68.11 -0.22 2.58 16 18 H 0.10 1.44 8.13 -51.93 -0.42 1.02 16 19 C 0.32 4.80 5.69 -157.19 -0.90 3.90 16 20 N -0.50 -7.35 10.09 -10.72 -0.11 -7.46 16 21 C 0.15 1.74 11.30 -17.20 -0.19 1.54 16 22 C -0.23 -2.32 10.17 -39.32 -0.40 -2.72 16 23 C 0.15 1.67 11.30 -17.20 -0.19 1.48 16 24 N -0.51 -7.39 10.33 -10.72 -0.11 -7.50 16 25 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.10 1.92 8.14 -51.92 -0.42 1.49 16 27 H 0.10 1.84 7.84 -51.92 -0.41 1.44 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 0.86 7.47 -51.92 -0.39 0.48 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.74 7.85 -51.92 -0.41 0.33 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.17 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 323.02 15.07 4.87 4.87 Total: -1.00 -37.23 323.02 -8.19 -45.42 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.58 Total: -1.12 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -1.94 Total: 1.89 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.09 Total: -50.70 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.09 Total: -12.07 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.72 Total: 17.49 kcal Atomic # 16 Polarization: -3.79 SS G_CDS: -1.99 Total: -5.78 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -37.23 -8.19 -45.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334246631.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.343 kcal (2) G-P(sol) polarization free energy of solvation -37.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds