Wall clock time and date at job start Tue Mar 31 2020 06:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48503 * 109.47412 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47444 * 300.00332 * 3 2 1 6 6 H 1.48498 * 109.47038 * 60.00304 * 3 2 1 7 7 C 1.39922 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00306 * 197.90854 * 7 2 1 9 9 C 1.41434 * 119.99819 * 17.89587 * 7 2 1 10 10 C 1.40814 * 120.17383 * 204.46164 * 9 7 2 11 11 C 1.37727 * 120.04667 * 180.02562 * 10 9 7 12 12 C 1.38362 * 120.40893 * 359.74312 * 11 10 9 13 13 C 1.39949 * 120.35026 * 0.52025 * 12 11 10 14 14 C 1.47772 * 120.02500 * 179.76515 * 13 12 11 15 15 N 1.31451 * 126.28102 * 179.74793 * 14 13 12 16 16 N 1.28662 * 109.37502 * 179.97438 * 15 14 13 17 17 C 1.31351 * 109.38625 * 359.97438 * 16 15 14 18 18 C 1.47754 * 126.28054 * 180.02562 * 17 16 15 19 19 C 1.39568 * 119.75188 * 0.02697 * 18 17 16 20 20 C 1.38364 * 119.05429 * 179.97438 * 19 18 17 21 21 C 1.38800 * 118.52598 * 359.97438 * 20 19 18 22 22 C 1.38334 * 119.40671 * 0.25796 * 21 20 19 23 23 N 1.31687 * 120.91522 * 359.46949 * 22 21 20 24 24 O 1.34779 * 126.28596 * 0.02745 * 14 13 12 25 25 C 1.39061 * 119.94347 * 359.48275 * 13 12 11 26 26 H 0.97009 * 119.99732 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.97950 * 0.04832 * 10 9 7 28 28 H 1.07994 * 119.79295 * 180.02562 * 11 10 9 29 29 H 1.08001 * 119.82323 * 180.25326 * 12 11 10 30 30 H 1.08010 * 120.47018 * 359.97438 * 19 18 17 31 31 H 1.07999 * 120.73566 * 179.97438 * 20 19 18 32 32 H 1.07995 * 120.29877 * 179.97438 * 21 20 19 33 33 H 1.08004 * 119.53952 * 179.72296 * 22 21 20 34 34 H 1.08005 * 120.20057 * 180.28487 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3464 -0.0006 5 1 1.8836 2.3966 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0487 -1.2345 0.2870 9 6 1.3521 -2.4068 -0.3775 10 6 1.8262 -3.6500 0.0836 11 6 1.1859 -4.8121 -0.2855 12 6 0.0721 -4.7681 -1.1052 13 6 -0.4102 -3.5422 -1.5776 14 6 -1.5973 -3.5039 -2.4569 15 7 -2.1547 -2.4272 -2.9647 16 7 -3.1670 -2.7684 -3.6818 17 6 -3.2956 -4.0754 -3.6606 18 6 -4.3334 -4.8633 -4.3574 19 6 -5.2970 -4.2112 -5.1282 20 6 -6.2618 -4.9631 -5.7749 21 6 -6.2328 -6.3434 -5.6314 22 6 -5.2518 -6.9244 -4.8481 23 7 -4.3413 -6.1871 -4.2468 24 8 -2.3102 -4.5661 -2.8812 25 6 0.2250 -2.3598 -1.2141 26 1 -0.4850 0.8401 0.0004 27 1 2.6923 -3.6922 0.7273 28 1 1.5527 -5.7633 0.0707 29 1 -0.4252 -5.6850 -1.3855 30 1 -5.2898 -3.1349 -5.2185 31 1 -7.0206 -4.4866 -6.3779 32 1 -6.9723 -6.9579 -6.1232 33 1 -5.2299 -7.9979 -4.7313 34 1 -0.1464 -1.4111 -1.5726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345783285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:51 Heat of formation + Delta-G solvation = 94.181645 kcal Electronic energy + Delta-G solvation = -21212.470289 eV Core-core repulsion = 17884.022354 eV Total energy + Delta-G solvation = -3328.447935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.56723 -40.26814 -37.69107 -35.69916 -33.92129 -33.09253 -32.68997 -31.15444 -29.78370 -28.48878 -25.51642 -24.83540 -24.12945 -23.00709 -22.10018 -20.81831 -20.43747 -18.08410 -17.55883 -16.87058 -16.66016 -16.14001 -15.78825 -15.35576 -14.79759 -14.47860 -14.32628 -14.20309 -13.47445 -13.38423 -12.90868 -12.55859 -12.25255 -11.98681 -11.88977 -11.48265 -11.41493 -11.17146 -10.92697 -10.71955 -10.58599 -10.37039 -10.07895 -9.90932 -9.82880 -9.78446 -9.32649 -8.91200 -7.64259 -7.49900 -6.87794 -4.49840 0.28664 0.96121 1.50320 2.44050 2.50094 2.71641 3.04756 3.06991 3.10829 3.27899 3.60707 3.62347 3.87158 4.40020 4.49074 4.52275 4.70939 4.74306 4.88160 5.09597 5.44041 5.46089 5.56098 5.64678 5.79532 5.88313 5.98464 6.09324 6.28472 6.30123 6.62695 6.87000 6.94041 7.11602 7.24656 7.57849 7.58761 7.72490 7.83244 8.03204 8.37589 8.67725 8.71742 8.72708 10.06699 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.003506 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.132717 B = 7984.003218 C = 8993.610608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.084 0.916 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.092 4.092 12 C -0.210 4.210 13 C -0.034 4.034 14 C 0.262 3.738 15 N -0.288 5.288 16 N -0.253 5.253 17 C 0.165 3.835 18 C 0.211 3.789 19 C -0.123 4.123 20 C -0.073 4.073 21 C -0.163 4.163 22 C 0.106 3.894 23 N -0.463 5.463 24 O -0.202 6.202 25 C -0.095 4.095 26 H 0.286 0.714 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.288 -8.060 -8.972 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.484 4.484 8 H 0.103 0.897 9 C 0.098 3.902 10 C -0.225 4.225 11 C -0.110 4.110 12 C -0.231 4.231 13 C -0.036 4.036 14 C 0.058 3.942 15 N -0.136 5.136 16 N -0.104 5.104 17 C -0.043 4.043 18 C 0.074 3.926 19 C -0.144 4.144 20 C -0.099 4.099 21 C -0.184 4.184 22 C -0.053 4.053 23 N -0.173 5.173 24 O -0.081 6.081 25 C -0.116 4.116 26 H 0.097 0.903 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.170 0.830 31 H 0.163 0.837 32 H 0.159 0.841 33 H 0.181 0.819 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.068 -7.040 -8.710 15.059 hybrid contribution -0.228 -0.175 -0.164 0.331 sum -10.295 -7.215 -8.874 15.388 Atomic orbital electron populations 1.69778 1.07612 1.29937 1.33217 1.25981 0.94800 1.01678 0.92188 0.86210 0.80880 0.80646 0.78775 1.18284 1.19447 1.19865 1.19617 0.98350 0.90856 1.39570 0.89741 1.17519 0.90858 0.92680 0.89161 1.21193 1.03426 0.92595 1.05276 1.20437 0.95518 0.97110 0.97985 1.20389 1.01156 0.94697 1.06893 1.17246 0.90897 0.96263 0.99220 1.26427 0.94052 0.78812 0.94888 1.74946 1.04289 1.23636 1.10745 1.74623 1.12371 1.08350 1.15090 1.24678 0.92241 0.89938 0.97475 1.17721 0.91130 0.88799 0.94945 1.22025 0.93812 1.02549 0.96048 1.21572 0.97386 0.93823 0.97119 1.22343 1.00212 0.95826 1.00005 1.22780 0.89747 1.00272 0.92519 1.67621 1.24368 1.05275 1.20074 1.84977 1.34494 1.37931 1.50684 1.21599 0.96907 0.95692 0.97359 0.90277 0.88113 0.88266 0.88317 0.82994 0.83721 0.84093 0.81851 0.84241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.96 10.96 55.55 0.61 -19.35 16 2 C 0.07 1.78 5.14 -17.35 -0.09 1.69 16 3 Si 0.91 18.21 29.59 -169.99 -5.03 13.18 16 4 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -11.53 9.05 -37.74 -0.34 -11.88 16 8 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 9 C 0.10 2.58 5.57 -106.87 -0.60 1.98 16 10 C -0.20 -4.74 9.78 -38.80 -0.38 -5.12 16 11 C -0.09 -1.98 10.01 -39.72 -0.40 -2.38 16 12 C -0.21 -4.72 9.73 -38.90 -0.38 -5.10 16 13 C -0.03 -0.82 5.87 -105.05 -0.62 -1.44 16 14 C 0.26 6.12 7.98 -13.82 -0.11 6.01 16 15 N -0.29 -6.78 11.90 32.08 0.38 -6.40 16 16 N -0.25 -5.27 11.88 32.08 0.38 -4.89 16 17 C 0.16 3.20 8.11 -13.87 -0.11 3.09 16 18 C 0.21 3.27 6.75 -83.04 -0.56 2.71 16 19 C -0.12 -1.45 9.73 -39.04 -0.38 -1.83 16 20 C -0.07 -0.60 10.16 -39.33 -0.40 -1.00 16 21 C -0.16 -1.23 10.11 -39.34 -0.40 -1.63 16 22 C 0.11 1.05 11.17 -17.58 -0.20 0.86 16 23 N -0.46 -6.80 10.31 -9.85 -0.10 -6.90 16 24 O -0.20 -4.36 10.67 2.78 0.03 -4.34 16 25 C -0.09 -2.46 8.34 -38.44 -0.32 -2.78 16 26 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 27 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 28 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.10 2.05 7.91 -52.49 -0.42 1.63 16 30 H 0.15 1.68 7.85 -52.48 -0.41 1.27 16 31 H 0.15 0.71 8.06 -52.49 -0.42 0.28 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.14 3.81 5.95 -52.48 -0.31 3.50 16 LS Contribution 312.34 15.07 4.71 4.71 Total: -1.00 -29.75 312.34 -7.10 -36.86 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -2.80 Total: 3.93 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -5.28 Total: -16.80 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 1.27 Total: -37.54 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: 0.03 Total: -4.34 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.75 -7.10 -36.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345783285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.039 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds