Wall clock time and date at job start Tue Mar 31 2020 06:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48503 * 109.47412 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47444 * 300.00332 * 3 2 1 6 6 H 1.48498 * 109.47038 * 60.00304 * 3 2 1 7 7 C 1.39922 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00306 * 197.90854 * 7 2 1 9 9 C 1.41434 * 119.99819 * 17.89587 * 7 2 1 10 10 C 1.40814 * 120.17383 * 204.46164 * 9 7 2 11 11 C 1.37727 * 120.04667 * 180.02562 * 10 9 7 12 12 C 1.38362 * 120.40893 * 359.74312 * 11 10 9 13 13 C 1.39949 * 120.35026 * 0.52025 * 12 11 10 14 14 C 1.47772 * 120.02500 * 179.76515 * 13 12 11 15 15 N 1.31451 * 126.28102 * 179.74793 * 14 13 12 16 16 N 1.28662 * 109.37502 * 179.97438 * 15 14 13 17 17 C 1.31351 * 109.38625 * 359.97438 * 16 15 14 18 18 C 1.47754 * 126.28054 * 180.02562 * 17 16 15 19 19 C 1.39568 * 119.75188 * 0.02697 * 18 17 16 20 20 C 1.38364 * 119.05429 * 179.97438 * 19 18 17 21 21 C 1.38800 * 118.52598 * 359.97438 * 20 19 18 22 22 C 1.38334 * 119.40671 * 0.25796 * 21 20 19 23 23 N 1.31687 * 120.91522 * 359.46949 * 22 21 20 24 24 O 1.34779 * 126.28596 * 0.02745 * 14 13 12 25 25 C 1.39061 * 119.94347 * 359.48275 * 13 12 11 26 26 H 0.97009 * 119.99732 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.97950 * 0.04832 * 10 9 7 28 28 H 1.07994 * 119.79295 * 180.02562 * 11 10 9 29 29 H 1.08001 * 119.82323 * 180.25326 * 12 11 10 30 30 H 1.08010 * 120.47018 * 359.97438 * 19 18 17 31 31 H 1.07999 * 120.73566 * 179.97438 * 20 19 18 32 32 H 1.07995 * 120.29877 * 179.97438 * 21 20 19 33 33 H 1.08004 * 119.53952 * 179.72296 * 22 21 20 34 34 H 1.08005 * 120.20057 * 180.28487 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3464 -0.0006 5 1 1.8836 2.3966 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0487 -1.2345 0.2870 9 6 1.3521 -2.4068 -0.3775 10 6 1.8262 -3.6500 0.0836 11 6 1.1859 -4.8121 -0.2855 12 6 0.0721 -4.7681 -1.1052 13 6 -0.4102 -3.5422 -1.5776 14 6 -1.5973 -3.5039 -2.4569 15 7 -2.1547 -2.4272 -2.9647 16 7 -3.1670 -2.7684 -3.6818 17 6 -3.2956 -4.0754 -3.6606 18 6 -4.3334 -4.8633 -4.3574 19 6 -5.2970 -4.2112 -5.1282 20 6 -6.2618 -4.9631 -5.7749 21 6 -6.2328 -6.3434 -5.6314 22 6 -5.2518 -6.9244 -4.8481 23 7 -4.3413 -6.1871 -4.2468 24 8 -2.3102 -4.5661 -2.8812 25 6 0.2250 -2.3598 -1.2141 26 1 -0.4850 0.8401 0.0004 27 1 2.6923 -3.6922 0.7273 28 1 1.5527 -5.7633 0.0707 29 1 -0.4252 -5.6850 -1.3855 30 1 -5.2898 -3.1349 -5.2185 31 1 -7.0206 -4.4866 -6.3779 32 1 -6.9723 -6.9579 -6.1232 33 1 -5.2299 -7.9979 -4.7313 34 1 -0.1464 -1.4111 -1.5726 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345783285.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:50 Heat of formation + Delta-G solvation = 73.015120 kcal Electronic energy + Delta-G solvation = -21213.388138 eV Core-core repulsion = 17884.022354 eV Total energy + Delta-G solvation = -3329.365784 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.21609 -41.14165 -39.51063 -37.36573 -35.73418 -34.34822 -33.61391 -32.59367 -31.60418 -30.01454 -27.37454 -26.11887 -25.45636 -24.21916 -23.43216 -22.55547 -22.20486 -19.59905 -19.00488 -18.52678 -17.72780 -17.53846 -16.91476 -16.82711 -16.55177 -16.17043 -15.39538 -15.17104 -15.08161 -14.65417 -14.29923 -14.13906 -13.74244 -13.63547 -13.19958 -13.13285 -13.00748 -12.84421 -12.68305 -12.37923 -12.21115 -11.71113 -11.67774 -11.56054 -11.08741 -11.00601 -10.71915 -10.16704 -9.50834 -9.24107 -8.69340 -6.41697 -0.90227 -0.00471 0.20691 0.89387 0.96480 0.98731 1.38514 1.40824 1.55620 1.56462 2.19527 2.33666 2.66855 2.70731 3.07881 3.58349 3.62284 3.72817 3.96767 3.98770 4.06246 4.16866 4.22297 4.41786 4.49519 4.50900 4.72123 4.83806 5.02227 5.04105 5.11172 5.12513 5.26821 5.40199 5.57735 5.75196 5.88355 5.97995 6.18335 6.49853 6.71016 6.83020 6.84855 7.04836 8.27189 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.003506 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.132717 B = 7984.003218 C = 8993.610608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.265 1.265 7 C -0.486 4.486 8 H 0.091 0.909 9 C 0.074 3.926 10 C -0.209 4.209 11 C -0.085 4.085 12 C -0.209 4.209 13 C -0.041 4.041 14 C 0.239 3.761 15 N -0.311 5.311 16 N -0.279 5.279 17 C 0.190 3.810 18 C 0.158 3.842 19 C -0.120 4.120 20 C -0.065 4.065 21 C -0.129 4.129 22 C 0.096 3.904 23 N -0.500 5.500 24 O -0.210 6.210 25 C -0.126 4.126 26 H 0.289 0.711 27 H 0.120 0.880 28 H 0.142 0.858 29 H 0.117 0.883 30 H 0.150 0.850 31 H 0.188 0.812 32 H 0.192 0.808 33 H 0.195 0.805 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.016 -10.166 -10.402 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.515 4.515 8 H 0.109 0.891 9 C 0.071 3.929 10 C -0.229 4.229 11 C -0.103 4.103 12 C -0.230 4.230 13 C -0.043 4.043 14 C 0.033 3.967 15 N -0.159 5.159 16 N -0.128 5.128 17 C -0.019 4.019 18 C 0.023 3.977 19 C -0.141 4.141 20 C -0.091 4.091 21 C -0.149 4.149 22 C -0.064 4.064 23 N -0.211 5.211 24 O -0.089 6.089 25 C -0.147 4.147 26 H 0.100 0.900 27 H 0.138 0.862 28 H 0.160 0.840 29 H 0.135 0.865 30 H 0.168 0.832 31 H 0.206 0.794 32 H 0.209 0.791 33 H 0.212 0.788 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.799 -9.137 -10.144 18.045 hybrid contribution 0.016 0.164 0.095 0.190 sum -11.784 -8.973 -10.049 17.898 Atomic orbital electron populations 1.69869 1.09252 1.30907 1.34397 1.26866 0.95407 1.04988 0.91169 0.85127 0.79711 0.75982 0.78770 1.17353 1.19502 1.18962 1.19903 0.98804 0.91745 1.41011 0.89123 1.17887 0.91246 0.94148 0.89589 1.21494 1.03926 0.92298 1.05145 1.20851 0.94432 0.98364 0.96637 1.20712 1.01343 0.94564 1.06335 1.17429 0.91076 0.96582 0.99206 1.26252 0.94834 0.79312 0.96284 1.74854 1.05179 1.24585 1.11240 1.74547 1.12508 1.09321 1.16398 1.25776 0.91194 0.90021 0.94874 1.17752 0.92226 0.89613 0.98111 1.22201 0.93631 1.02914 0.95381 1.22112 0.96676 0.94178 0.96085 1.22932 0.99055 0.95906 0.97021 1.23476 0.89293 1.01479 0.92133 1.67479 1.26674 1.05116 1.21796 1.84961 1.35050 1.37626 1.51240 1.21401 0.98480 0.95408 0.99376 0.89983 0.86211 0.84017 0.86530 0.83178 0.79433 0.79094 0.78783 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.19 10.96 21.82 0.24 -43.95 16 2 C 0.03 1.60 5.14 85.25 0.44 2.04 16 3 Si 0.98 38.37 29.59 68.60 2.03 40.40 16 4 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 5 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 7 C -0.49 -25.53 9.05 23.47 0.21 -25.32 16 8 H 0.09 4.46 7.91 -2.91 -0.02 4.44 16 9 C 0.07 3.93 5.57 -21.32 -0.12 3.82 16 10 C -0.21 -9.68 9.78 22.78 0.22 -9.46 16 11 C -0.08 -3.55 10.01 22.18 0.22 -3.33 16 12 C -0.21 -9.40 9.73 22.71 0.22 -9.18 16 13 C -0.04 -2.07 5.87 -20.14 -0.12 -2.19 16 14 C 0.24 11.82 7.98 87.27 0.70 12.52 16 15 N -0.31 -15.67 11.90 -166.17 -1.98 -17.65 16 16 N -0.28 -12.30 11.88 -166.17 -1.97 -14.27 16 17 C 0.19 7.69 8.11 87.28 0.71 8.40 16 18 C 0.16 4.89 6.75 41.83 0.28 5.17 16 19 C -0.12 -2.63 9.73 22.62 0.22 -2.41 16 20 C -0.07 -0.78 10.16 22.43 0.23 -0.55 16 21 C -0.13 -1.24 10.11 22.43 0.23 -1.01 16 22 C 0.10 1.57 11.17 84.74 0.95 2.52 16 23 N -0.50 -14.12 10.31 -185.08 -1.91 -16.03 16 24 O -0.21 -9.46 10.67 -12.97 -0.14 -9.60 16 25 C -0.13 -6.91 8.34 23.01 0.19 -6.72 16 26 H 0.29 14.33 8.30 -92.70 -0.77 13.56 16 27 H 0.12 4.99 8.06 -2.91 -0.02 4.96 16 28 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 29 H 0.12 4.77 7.91 -2.91 -0.02 4.74 16 30 H 0.15 3.25 7.85 -2.91 -0.02 3.23 16 31 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 32 H 0.19 0.04 8.06 -2.91 -0.02 0.01 16 33 H 0.20 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.12 6.81 5.95 -2.91 -0.02 6.79 16 Total: -1.00 -71.49 312.34 2.00 -69.49 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 1.15 Total: 17.32 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 4.58 Total: -25.71 kcal Atomic # 7 Polarization: -86.28 SS G_CDS: -5.62 Total: -91.90 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.14 Total: -9.60 kcal Atomic # 14 Polarization: 38.37 SS G_CDS: 2.03 Total: 40.40 kcal Total: -71.49 2.00 -69.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345783285.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.509 kcal (2) G-P(sol) polarization free energy of solvation -71.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds