Wall clock time and date at job start Tue Mar 31 2020 07:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99781 * 2 1 4 4 N 1.46502 * 109.47290 * 125.18304 * 3 2 1 5 5 C 1.46497 * 119.99903 * 94.77870 * 4 3 2 6 6 C 1.50701 * 109.47214 * 79.48875 * 5 4 3 7 7 H 1.08007 * 119.99873 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99989 * 180.02562 * 6 5 4 9 9 N 1.31506 * 120.00028 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99606 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47583 * 59.99927 * 10 8 6 12 12 H 1.48508 * 109.46970 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47421 * 299.99430 * 10 8 6 14 14 C 1.34779 * 119.99738 * 274.77627 * 4 3 2 15 15 O 1.21554 * 120.00066 * 1.63478 * 14 4 3 16 16 C 1.47843 * 119.99718 * 181.63179 * 14 4 3 17 17 C 1.39601 * 120.14611 * 22.92318 * 16 14 4 18 18 C 1.37939 * 119.84948 * 179.74641 * 17 16 14 19 19 C 1.38375 * 120.14780 * 0.53074 * 18 17 16 20 20 C 1.38340 * 120.29333 * 359.74579 * 19 18 17 21 21 C 1.50702 * 119.92802 * 180.02562 * 20 19 18 22 22 Cl 1.80301 * 109.46536 * 269.97611 * 21 20 19 23 23 C 1.37977 * 120.14549 * 359.97438 * 20 19 18 24 24 H 1.08007 * 119.99791 * 185.01999 * 1 2 3 25 25 H 1.07996 * 120.00407 * 5.02469 * 1 2 3 26 26 H 1.08002 * 120.00066 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46964 * 245.18533 * 3 2 1 28 28 H 1.08999 * 109.47350 * 5.18157 * 3 2 1 29 29 H 1.09003 * 109.46781 * 199.47978 * 5 4 3 30 30 H 1.08997 * 109.47256 * 319.48620 * 5 4 3 31 31 H 0.97004 * 120.00163 * 179.97438 * 9 8 6 32 32 H 1.07997 * 120.06606 * 0.02562 * 17 16 14 33 33 H 1.07997 * 119.91976 * 180.25458 * 18 17 16 34 34 H 1.08000 * 119.85281 * 179.76819 * 19 18 17 35 35 H 1.08997 * 109.47203 * 29.97022 * 21 20 19 36 36 H 1.09000 * 109.47099 * 149.97460 * 21 20 19 37 37 H 1.07996 * 120.07346 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9969 1.3302 1.1289 5 6 4.3907 0.9225 0.9360 6 6 5.1626 2.0539 0.3073 7 1 4.6646 2.9835 0.0743 8 6 6.5043 1.9019 0.0286 9 7 7.1106 0.7698 0.3119 10 14 7.4609 3.3040 -0.7513 11 1 7.4116 4.4921 0.1383 12 1 8.8739 2.8909 -0.9467 13 1 6.8580 3.6441 -2.0651 14 6 2.5732 1.7283 2.3448 15 8 1.4097 2.0382 2.5117 16 6 3.5236 1.7881 3.4757 17 6 4.8934 1.9085 3.2347 18 6 5.7742 1.9690 4.2945 19 6 5.3038 1.8995 5.5940 20 6 3.9482 1.7744 5.8396 21 6 3.4448 1.7000 7.2582 22 17 3.3934 -0.0227 7.7879 23 6 3.0558 1.7185 4.7888 24 1 -0.5400 -0.9318 0.0818 25 1 -0.5400 0.9316 -0.0819 26 1 1.8500 -0.9353 0.0004 27 1 2.6186 1.4041 -0.9328 28 1 1.3588 2.1315 0.0928 29 1 4.8330 0.6729 1.9005 30 1 4.4272 0.0507 0.2829 31 1 8.0545 0.6627 0.1155 32 1 5.2620 1.9588 2.2209 33 1 6.8338 2.0664 4.1094 34 1 5.9981 1.9436 6.4201 35 1 4.1136 2.2610 7.9109 36 1 2.4432 2.1266 7.3111 37 1 1.9977 1.6212 4.9819 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001358240060.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:36 Heat of formation + Delta-G solvation = 8.388340 kcal Electronic energy + Delta-G solvation = -21103.828758 eV Core-core repulsion = 17872.768041 eV Total energy + Delta-G solvation = -3231.060718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.092 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.47119 -39.45874 -37.32434 -36.85856 -35.47167 -34.12479 -33.10157 -31.97819 -29.65243 -27.82788 -27.07120 -25.16826 -23.90997 -22.62185 -21.07184 -20.27664 -18.60036 -17.91992 -17.71014 -17.11779 -16.49191 -16.26351 -15.83410 -15.46939 -15.40177 -15.23121 -14.66933 -14.52121 -14.31038 -14.25144 -14.03098 -13.52089 -13.13801 -13.05924 -12.72529 -12.67120 -12.41072 -12.27079 -12.07687 -11.75175 -11.59206 -11.34444 -11.24669 -10.83785 -10.66023 -10.26727 -9.92803 -9.59610 -9.50573 -8.25000 -6.41444 -0.03234 0.27173 1.25586 1.44159 1.46198 1.51326 1.53828 1.98281 2.33228 2.46194 2.96120 3.04443 3.59029 3.67128 3.92775 4.02848 4.13378 4.21475 4.30760 4.47806 4.51500 4.61129 4.66892 4.76919 4.83382 4.98491 5.00117 5.05632 5.20716 5.43744 5.56684 5.61715 5.64717 5.68029 5.71590 5.85805 5.94826 6.05474 6.51055 6.74738 7.21212 7.33021 8.78663 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.011842 B = 0.005903 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.950213 B = 4741.814827 C = 6535.783066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.185 4.185 3 C 0.144 3.856 4 N -0.587 5.587 5 C 0.221 3.779 6 C -0.552 4.552 7 H 0.057 0.943 8 C 0.036 3.964 9 N -0.904 5.904 10 Si 0.953 3.047 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.273 1.273 14 C 0.549 3.451 15 O -0.589 6.589 16 C -0.163 4.163 17 C -0.114 4.114 18 C -0.144 4.144 19 C -0.067 4.067 20 C -0.132 4.132 21 C 0.023 3.977 22 Cl -0.200 7.200 23 C -0.052 4.052 24 H 0.117 0.883 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.013 0.987 31 H 0.273 0.727 32 H 0.189 0.811 33 H 0.135 0.865 34 H 0.159 0.841 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 1.323 9.549 10.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.204 4.204 3 C 0.022 3.978 4 N -0.315 5.315 5 C 0.101 3.899 6 C -0.589 4.589 7 H 0.075 0.925 8 C -0.168 4.168 9 N -0.541 5.541 10 Si 0.778 3.222 11 H -0.194 1.194 12 H -0.204 1.204 13 H -0.199 1.199 14 C 0.340 3.660 15 O -0.473 6.473 16 C -0.166 4.166 17 C -0.131 4.131 18 C -0.162 4.162 19 C -0.085 4.085 20 C -0.132 4.132 21 C -0.038 4.038 22 Cl -0.173 7.173 23 C -0.072 4.072 24 H 0.135 0.865 25 H 0.118 0.882 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.205 0.795 33 H 0.153 0.847 34 H 0.176 0.824 35 H 0.151 0.849 36 H 0.133 0.867 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.111 1.239 9.629 10.543 hybrid contribution 0.638 0.302 -0.907 1.149 sum -3.473 1.542 8.722 9.514 Atomic orbital electron populations 1.23952 0.95101 1.02768 0.98176 1.23233 0.96857 0.98187 1.02090 1.20454 0.91933 0.95916 0.89479 1.48083 1.12330 1.63039 1.08093 1.20102 0.76291 0.94880 0.98583 1.21441 0.94910 1.00439 1.42152 0.92513 1.25595 0.98127 0.97938 0.95097 1.70000 1.12023 1.25624 1.46434 0.85676 0.77673 0.79641 0.79224 1.19412 1.20390 1.19867 1.18672 0.87134 0.76706 0.83491 1.90619 1.19302 1.52739 1.84618 1.19951 0.94121 1.08775 0.93710 1.23768 0.92451 0.91444 1.05423 1.21377 1.00482 1.01781 0.92514 1.21558 0.94868 0.94760 0.97329 1.19765 0.93798 1.04991 0.94643 1.23289 1.06070 0.82215 0.92260 1.98735 1.99330 1.27655 1.91595 1.21123 1.00066 0.95313 0.90655 0.86485 0.88212 0.87765 0.89509 0.90992 0.91916 0.96870 0.91788 0.79486 0.84728 0.82381 0.84935 0.86652 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.71 14.31 67.78 0.97 -3.74 16 2 C -0.18 -6.31 9.81 25.64 0.25 -6.06 16 3 C 0.14 5.61 5.77 85.63 0.49 6.10 16 4 N -0.59 -25.90 2.47 -833.92 -2.06 -27.96 16 5 C 0.22 10.54 4.61 85.63 0.39 10.93 16 6 C -0.55 -27.32 7.31 25.60 0.19 -27.14 16 7 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 8 C 0.04 1.75 5.29 84.66 0.45 2.20 16 9 N -0.90 -46.42 13.29 21.45 0.28 -46.14 16 10 Si 0.95 39.27 29.54 68.60 2.03 41.30 16 11 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 12 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 13 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 14 C 0.55 24.63 7.49 86.79 0.65 25.28 16 15 O -0.59 -27.77 16.25 -3.88 -0.06 -27.84 16 16 C -0.16 -6.63 5.62 -20.09 -0.11 -6.75 16 17 C -0.11 -4.64 7.53 22.53 0.17 -4.47 16 18 C -0.14 -4.81 10.03 22.23 0.22 -4.59 16 19 C -0.07 -1.78 9.69 22.33 0.22 -1.57 16 20 C -0.13 -3.54 5.25 -19.90 -0.10 -3.65 16 21 C 0.02 0.45 6.78 71.24 0.48 0.93 16 22 Cl -0.20 -4.64 29.13 -2.72 -0.08 -4.72 16 23 C -0.05 -1.78 9.24 22.53 0.21 -1.57 16 24 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 25 H 0.10 2.79 7.86 -2.91 -0.02 2.77 16 26 H 0.10 3.56 8.06 -2.91 -0.02 3.54 16 27 H 0.09 3.33 8.04 -2.39 -0.02 3.31 16 28 H 0.07 2.78 7.26 -2.39 -0.02 2.76 16 29 H 0.06 3.10 4.22 -2.39 -0.01 3.09 16 30 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 32 H 0.19 8.71 2.52 -2.91 -0.01 8.70 16 33 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 35 H 0.13 1.69 8.08 -2.39 -0.02 1.67 16 36 H 0.12 1.87 8.08 -2.39 -0.02 1.85 16 37 H 0.13 4.22 7.82 -2.91 -0.02 4.20 16 Total: -1.00 -58.48 331.09 5.66 -52.82 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 1.08 Total: 26.60 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 4.48 Total: -14.08 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -1.77 Total: -74.09 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.06 Total: -27.84 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 17 Polarization: -4.64 SS G_CDS: -0.08 Total: -4.72 kcal Total: -58.48 5.66 -52.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001358240060.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.210 kcal (2) G-P(sol) polarization free energy of solvation -58.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds