Wall clock time and date at job start Tue Mar 31 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39781 * 119.67028 * 350.07114 * 3 2 1 5 5 C 1.38447 * 119.24112 * 179.76913 * 4 3 2 6 6 C 1.38649 * 118.57854 * 0.49361 * 5 4 3 7 7 C 1.39519 * 119.27424 * 359.75002 * 6 5 4 8 8 C 1.48167 * 119.64919 * 179.97438 * 7 6 5 9 9 O 1.21531 * 120.00003 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00286 * 180.02562 * 8 7 6 11 11 C 1.39844 * 120.00306 * 174.89526 * 10 8 7 12 12 C 1.39318 * 119.94748 * 325.53816 * 11 10 8 13 13 C 1.38478 * 120.42355 * 179.72195 * 12 11 10 14 14 C 1.37680 * 120.32467 * 0.55403 * 13 12 11 15 15 C 1.40742 * 119.89188 * 359.72768 * 14 13 12 16 16 C 1.41406 * 120.20861 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00575 * 25.13191 * 16 15 14 18 18 C 1.39937 * 119.99846 * 205.13344 * 16 15 14 19 19 N 1.30821 * 119.99924 * 16.78709 * 18 16 15 20 20 Si 1.86800 * 119.99947 * 196.78477 * 18 16 15 21 21 H 1.48508 * 109.46844 * 90.00250 * 20 18 16 22 22 H 1.48493 * 109.47096 * 209.99719 * 20 18 16 23 23 H 1.48491 * 109.47340 * 330.00216 * 20 18 16 24 24 C 1.38258 * 119.95314 * 145.81533 * 11 10 8 25 25 N 1.32427 * 119.66547 * 170.34184 * 3 2 1 26 26 H 1.07996 * 120.37410 * 0.02562 * 4 3 2 27 27 H 1.07997 * 120.70659 * 180.24440 * 5 4 3 28 28 H 1.07997 * 120.36069 * 179.77263 * 6 5 4 29 29 H 0.96999 * 119.99482 * 354.88949 * 10 8 7 30 30 H 1.08001 * 119.78858 * 359.97438 * 12 11 10 31 31 H 1.08006 * 119.83820 * 180.25761 * 13 12 11 32 32 H 1.08004 * 120.05425 * 179.74097 * 14 13 12 33 33 H 0.97005 * 120.00013 * 180.02562 * 19 18 16 34 34 H 1.08003 * 120.16423 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2605 -1.1954 0.2094 5 6 4.6449 -1.1854 0.2028 6 6 5.2985 0.0200 -0.0023 7 6 4.5468 1.1787 -0.1999 8 6 5.2367 2.4714 -0.4193 9 8 6.4511 2.5185 -0.4269 10 7 4.5176 3.5952 -0.6105 11 6 5.1647 4.8309 -0.7109 12 6 6.3140 5.0769 0.0371 13 6 6.9658 6.2949 -0.0590 14 6 6.4782 7.2809 -0.8871 15 6 5.3148 7.0489 -1.6444 16 6 4.8084 8.0566 -2.4974 17 1 5.4703 8.8137 -2.8913 18 6 3.4496 8.0730 -2.8313 19 7 2.5933 7.3844 -2.1213 20 14 2.8584 9.0780 -4.2906 21 1 2.8944 8.2398 -5.5160 22 1 1.4674 9.5362 -4.0452 23 1 3.7433 10.2568 -4.4710 24 6 4.6596 5.8085 -1.5479 25 7 3.2230 1.1353 -0.1931 26 1 2.7217 -2.1174 0.3703 27 1 5.2038 -2.0964 0.3582 28 1 6.3777 0.0616 -0.0093 29 1 3.5512 3.5468 -0.6785 30 1 6.7013 4.3114 0.6931 31 1 7.8585 6.4740 0.5221 32 1 6.9877 8.2307 -0.9555 33 1 1.6513 7.3954 -2.3529 34 1 3.7664 5.6204 -2.1252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436285090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:51 Heat of formation + Delta-G solvation = 58.680888 kcal Electronic energy + Delta-G solvation = -21171.426208 eV Core-core repulsion = 17841.438845 eV Total energy + Delta-G solvation = -3329.987363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.99680 -39.33216 -37.24850 -36.71801 -34.43830 -33.48053 -32.95194 -32.07516 -29.56359 -28.49796 -25.35722 -25.17981 -24.91003 -21.86577 -21.20739 -19.95165 -19.35846 -17.82685 -17.37867 -16.56630 -16.34846 -15.60748 -15.35337 -14.94804 -14.72137 -14.41180 -14.28023 -13.85165 -13.51880 -13.21755 -13.08717 -12.90041 -12.78962 -12.48518 -12.34586 -11.65533 -11.30033 -11.14271 -10.79026 -10.71402 -10.45929 -10.39319 -10.05488 -9.76085 -9.59027 -9.55457 -9.24264 -9.01345 -7.40233 -7.04748 -6.70565 -4.37986 0.08104 0.52142 2.19209 2.22062 2.69330 2.86312 3.08300 3.10069 3.11426 3.17408 3.26890 3.40370 3.74616 3.93737 4.14701 4.42110 4.51591 4.59576 4.64457 4.97648 5.04415 5.48994 5.60616 5.66699 5.98209 6.24706 6.59040 6.64926 6.83611 6.99569 7.03756 7.05012 7.19426 7.25946 7.55718 7.65810 7.89527 8.01084 8.09110 8.29511 8.47597 8.67234 8.87983 8.93358 10.18843 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.004071 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.516826 B = 6877.039438 C = 8341.624731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C 0.266 3.734 3 C 0.192 3.808 4 C -0.105 4.105 5 C -0.077 4.077 6 C -0.087 4.087 7 C 0.101 3.899 8 C 0.560 3.440 9 O -0.514 6.514 10 N -0.638 5.638 11 C 0.140 3.860 12 C -0.227 4.227 13 C -0.085 4.085 14 C -0.226 4.226 15 C 0.120 3.880 16 C -0.463 4.463 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.797 5.797 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.177 4.177 25 N -0.426 5.426 26 H 0.151 0.849 27 H 0.155 0.845 28 H 0.160 0.840 29 H 0.413 0.587 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.280 0.720 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 -16.220 3.479 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.060 5.060 2 C -0.051 4.051 3 C 0.051 3.949 4 C -0.127 4.127 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.040 4.040 8 C 0.344 3.656 9 O -0.389 6.389 10 N -0.280 5.280 11 C 0.048 3.952 12 C -0.248 4.248 13 C -0.104 4.104 14 C -0.246 4.246 15 C 0.117 3.883 16 C -0.493 4.493 17 H 0.097 0.903 18 C -0.141 4.141 19 N -0.423 5.423 20 Si 0.732 3.268 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.198 4.198 25 N -0.139 5.139 26 H 0.169 0.831 27 H 0.173 0.827 28 H 0.178 0.822 29 H 0.250 0.750 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.568 -15.431 3.378 15.806 hybrid contribution -0.097 -0.305 -0.514 0.606 sum -0.664 -15.736 2.864 16.008 Atomic orbital electron populations 1.81276 1.11413 1.06388 1.06921 1.24910 0.91554 0.94157 0.94494 1.16264 0.86212 0.90172 1.02264 1.22203 0.95218 0.98161 0.97163 1.21627 0.93584 0.98757 0.96306 1.22445 1.03168 0.91447 0.93768 1.21363 0.88194 0.95357 0.99115 1.17746 0.86714 0.82661 0.78487 1.90819 1.12466 1.85342 1.50270 1.43325 1.11057 1.05272 1.68393 1.17616 0.95242 0.83681 0.98617 1.20276 0.99631 0.98346 1.06504 1.20408 0.97988 0.93457 0.98549 1.21054 1.01914 0.98517 1.03130 1.17358 0.90131 0.91168 0.89605 1.19553 0.93428 1.10852 1.25464 0.90272 1.25883 0.96819 0.95083 0.96282 1.69803 1.03759 1.34717 1.33983 0.86317 0.78278 0.80488 0.81673 1.19331 1.20365 1.18610 1.21100 1.03941 0.93035 1.01749 1.67434 1.09566 1.27897 1.09005 0.83149 0.82716 0.82221 0.75050 0.88051 0.88919 0.88776 0.90917 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -5.17 18.54 41.84 0.78 -4.40 16 2 C 0.27 3.08 15.53 -22.47 -0.35 2.74 16 3 C 0.19 1.97 6.58 -85.11 -0.56 1.41 16 4 C -0.10 -0.68 9.80 -38.93 -0.38 -1.06 16 5 C -0.08 -0.46 10.16 -39.35 -0.40 -0.86 16 6 C -0.09 -0.82 9.63 -38.95 -0.38 -1.20 16 7 C 0.10 1.34 6.75 -83.04 -0.56 0.78 16 8 C 0.56 9.89 7.54 -12.18 -0.09 9.80 16 9 O -0.51 -10.26 14.06 5.34 0.08 -10.19 16 10 N -0.64 -12.49 5.32 -10.67 -0.06 -12.54 16 11 C 0.14 3.28 6.24 -83.79 -0.52 2.76 16 12 C -0.23 -5.29 8.66 -39.09 -0.34 -5.63 16 13 C -0.09 -1.96 10.01 -39.70 -0.40 -2.35 16 14 C -0.23 -5.56 9.79 -38.84 -0.38 -5.94 16 15 C 0.12 3.19 5.57 -106.85 -0.59 2.59 16 16 C -0.46 -12.17 9.06 -37.74 -0.34 -12.51 16 17 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 18 C 0.08 1.90 5.16 -17.35 -0.09 1.81 16 19 N -0.80 -20.29 10.94 55.55 0.61 -19.68 16 20 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.18 -4.52 8.60 -38.68 -0.33 -4.86 16 25 N -0.43 -5.55 9.45 -7.74 -0.07 -5.62 16 26 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 27 H 0.16 0.36 8.06 -52.49 -0.42 -0.06 16 28 H 0.16 1.39 7.63 -52.49 -0.40 0.99 16 29 H 0.41 7.50 8.15 -40.82 -0.33 7.17 16 30 H 0.10 2.29 6.48 -52.49 -0.34 1.95 16 31 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 32 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 33 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 34 H 0.12 3.22 6.17 -52.48 -0.32 2.90 16 LS Contribution 315.14 15.07 4.75 4.75 Total: -1.00 -30.52 315.14 -7.31 -37.82 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -2.64 Total: 8.79 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -5.72 Total: -12.53 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 1.25 Total: -42.24 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.08 Total: -10.19 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.52 -7.31 -37.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436285090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.505 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds