Wall clock time and date at job start Tue Mar 31 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39781 * 119.67028 * 350.07114 * 3 2 1 5 5 C 1.38447 * 119.24112 * 179.76913 * 4 3 2 6 6 C 1.38649 * 118.57854 * 0.49361 * 5 4 3 7 7 C 1.39519 * 119.27424 * 359.75002 * 6 5 4 8 8 C 1.48167 * 119.64919 * 179.97438 * 7 6 5 9 9 O 1.21531 * 120.00003 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00286 * 180.02562 * 8 7 6 11 11 C 1.39844 * 120.00306 * 174.89526 * 10 8 7 12 12 C 1.39318 * 119.94748 * 325.53816 * 11 10 8 13 13 C 1.38478 * 120.42355 * 179.72195 * 12 11 10 14 14 C 1.37680 * 120.32467 * 0.55403 * 13 12 11 15 15 C 1.40742 * 119.89188 * 359.72768 * 14 13 12 16 16 C 1.41406 * 120.20861 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00575 * 25.13191 * 16 15 14 18 18 C 1.39937 * 119.99846 * 205.13344 * 16 15 14 19 19 N 1.30821 * 119.99924 * 16.78709 * 18 16 15 20 20 Si 1.86800 * 119.99947 * 196.78477 * 18 16 15 21 21 H 1.48508 * 109.46844 * 90.00250 * 20 18 16 22 22 H 1.48493 * 109.47096 * 209.99719 * 20 18 16 23 23 H 1.48491 * 109.47340 * 330.00216 * 20 18 16 24 24 C 1.38258 * 119.95314 * 145.81533 * 11 10 8 25 25 N 1.32427 * 119.66547 * 170.34184 * 3 2 1 26 26 H 1.07996 * 120.37410 * 0.02562 * 4 3 2 27 27 H 1.07997 * 120.70659 * 180.24440 * 5 4 3 28 28 H 1.07997 * 120.36069 * 179.77263 * 6 5 4 29 29 H 0.96999 * 119.99482 * 354.88949 * 10 8 7 30 30 H 1.08001 * 119.78858 * 359.97438 * 12 11 10 31 31 H 1.08006 * 119.83820 * 180.25761 * 13 12 11 32 32 H 1.08004 * 120.05425 * 179.74097 * 14 13 12 33 33 H 0.97005 * 120.00013 * 180.02562 * 19 18 16 34 34 H 1.08003 * 120.16423 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2605 -1.1954 0.2094 5 6 4.6449 -1.1854 0.2028 6 6 5.2985 0.0200 -0.0023 7 6 4.5468 1.1787 -0.1999 8 6 5.2367 2.4714 -0.4193 9 8 6.4511 2.5185 -0.4269 10 7 4.5176 3.5952 -0.6105 11 6 5.1647 4.8309 -0.7109 12 6 6.3140 5.0769 0.0371 13 6 6.9658 6.2949 -0.0590 14 6 6.4782 7.2809 -0.8871 15 6 5.3148 7.0489 -1.6444 16 6 4.8084 8.0566 -2.4974 17 1 5.4703 8.8137 -2.8913 18 6 3.4496 8.0730 -2.8313 19 7 2.5933 7.3844 -2.1213 20 14 2.8584 9.0780 -4.2906 21 1 2.8944 8.2398 -5.5160 22 1 1.4674 9.5362 -4.0452 23 1 3.7433 10.2568 -4.4710 24 6 4.6596 5.8085 -1.5479 25 7 3.2230 1.1353 -0.1931 26 1 2.7217 -2.1174 0.3703 27 1 5.2038 -2.0964 0.3582 28 1 6.3777 0.0616 -0.0093 29 1 3.5512 3.5468 -0.6785 30 1 6.7013 4.3114 0.6931 31 1 7.8585 6.4740 0.5221 32 1 6.9877 8.2307 -0.9555 33 1 1.6513 7.3954 -2.3529 34 1 3.7664 5.6204 -2.1252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436285090.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:50 Heat of formation + Delta-G solvation = 39.806988 kcal Electronic energy + Delta-G solvation = -21172.244641 eV Core-core repulsion = 17841.438845 eV Total energy + Delta-G solvation = -3330.805797 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.98514 -40.68616 -38.95663 -37.70646 -36.09401 -35.16912 -33.83793 -32.96817 -31.46931 -30.20551 -27.20969 -26.18236 -25.81328 -23.25344 -22.97145 -21.47795 -20.43849 -19.30412 -18.89995 -17.75865 -17.21123 -16.89477 -16.69835 -16.54250 -16.35976 -15.72097 -15.55099 -14.90233 -14.80807 -14.51270 -14.31782 -14.18599 -13.97117 -13.92265 -13.49078 -13.18887 -13.06899 -12.85279 -12.61412 -12.36906 -11.91964 -11.58763 -11.43965 -11.16188 -11.11479 -10.93057 -10.65488 -10.38151 -9.34182 -8.88368 -8.56274 -6.36690 -0.68000 -0.25378 0.83780 1.03725 1.28456 1.38830 1.44557 1.51735 1.55249 1.96968 2.04757 2.21057 2.32772 2.72440 2.82615 3.17672 3.70983 3.73104 3.81066 3.93384 4.19091 4.38987 4.47317 4.71393 4.84544 4.91995 4.98067 5.07758 5.13846 5.20195 5.33858 5.37245 5.74397 5.82017 6.01183 6.08095 6.14253 6.25555 6.38827 6.56787 6.69805 6.92755 6.95744 7.11620 8.33092 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.015856 B = 0.004071 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.516826 B = 6877.039438 C = 8341.624731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.287 3.713 3 C 0.172 3.828 4 C -0.071 4.071 5 C -0.052 4.052 6 C -0.078 4.078 7 C 0.072 3.928 8 C 0.561 3.439 9 O -0.542 6.542 10 N -0.646 5.646 11 C 0.145 3.855 12 C -0.235 4.235 13 C -0.081 4.081 14 C -0.245 4.245 15 C 0.093 3.907 16 C -0.498 4.498 17 H 0.079 0.921 18 C 0.037 3.963 19 N -0.825 5.825 20 Si 0.981 3.019 21 H -0.264 1.264 22 H -0.269 1.269 23 H -0.257 1.257 24 C -0.203 4.203 25 N -0.456 5.456 26 H 0.195 0.805 27 H 0.208 0.792 28 H 0.167 0.833 29 H 0.416 0.584 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.287 0.713 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.404 -18.962 3.760 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.031 4.031 3 C 0.032 3.968 4 C -0.093 4.093 5 C -0.077 4.077 6 C -0.099 4.099 7 C -0.068 4.068 8 C 0.348 3.652 9 O -0.419 6.419 10 N -0.289 5.289 11 C 0.052 3.948 12 C -0.256 4.256 13 C -0.100 4.100 14 C -0.265 4.265 15 C 0.090 3.910 16 C -0.527 4.527 17 H 0.097 0.903 18 C -0.178 4.178 19 N -0.451 5.451 20 Si 0.802 3.198 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.180 1.180 24 C -0.224 4.224 25 N -0.170 5.170 26 H 0.212 0.788 27 H 0.225 0.775 28 H 0.185 0.815 29 H 0.253 0.747 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.098 0.902 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.196 -18.198 3.677 18.567 hybrid contribution -0.178 0.363 -0.510 0.651 sum -0.374 -17.835 3.166 18.118 Atomic orbital electron populations 1.81292 1.12613 1.07663 1.08625 1.25138 0.91763 0.92968 0.93182 1.16440 0.85427 0.91003 1.03979 1.22716 0.95564 0.97933 0.93075 1.22184 0.93294 0.98890 0.93379 1.22655 1.03481 0.91346 0.92450 1.20701 0.88561 0.94082 1.03470 1.18423 0.86579 0.83566 0.76628 1.90776 1.13697 1.86146 1.51242 1.43356 1.11293 1.04908 1.69359 1.17720 0.95037 0.84779 0.97251 1.20496 0.99745 0.98775 1.06607 1.20757 0.98658 0.92722 0.97871 1.21246 1.01909 0.99574 1.03756 1.17752 0.91183 0.91757 0.90332 1.19819 0.94537 1.11494 1.26871 0.90308 1.26724 0.96385 0.96101 0.98577 1.69864 1.04303 1.35663 1.35235 0.85213 0.77985 0.78869 0.77720 1.18905 1.19352 1.18028 1.21024 1.04226 0.93881 1.03296 1.67138 1.09827 1.30031 1.10029 0.78799 0.77496 0.81546 0.74663 0.87248 0.85680 0.87789 0.90232 0.87373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -11.29 18.54 19.01 0.35 -10.94 16 2 C 0.29 6.31 15.53 88.33 1.37 7.68 16 3 C 0.17 3.18 6.58 40.67 0.27 3.45 16 4 C -0.07 -0.57 9.80 22.69 0.22 -0.35 16 5 C -0.05 -0.33 10.16 22.42 0.23 -0.11 16 6 C -0.08 -1.24 9.63 22.68 0.22 -1.02 16 7 C 0.07 1.85 6.75 42.00 0.28 2.14 16 8 C 0.56 20.18 7.54 86.88 0.66 20.84 16 9 O -0.54 -21.86 14.06 -3.81 -0.05 -21.91 16 10 N -0.65 -26.38 5.32 -305.96 -1.63 -28.00 16 11 C 0.15 7.06 6.24 38.13 0.24 7.30 16 12 C -0.24 -11.16 8.66 22.59 0.20 -10.96 16 13 C -0.08 -3.76 10.01 22.19 0.22 -3.54 16 14 C -0.25 -12.36 9.79 22.75 0.22 -12.13 16 15 C 0.09 5.12 5.57 -21.31 -0.12 5.00 16 16 C -0.50 -27.14 9.06 23.46 0.21 -26.93 16 17 H 0.08 4.13 7.90 -2.91 -0.02 4.11 16 18 C 0.04 1.88 5.16 85.26 0.44 2.32 16 19 N -0.82 -43.41 10.94 21.82 0.24 -43.17 16 20 Si 0.98 38.71 29.59 68.60 2.03 40.74 16 21 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 24 C -0.20 -10.90 8.60 22.85 0.20 -10.70 16 25 N -0.46 -11.66 9.45 -178.41 -1.69 -13.35 16 26 H 0.19 -0.03 8.06 -2.91 -0.02 -0.05 16 27 H 0.21 -0.68 8.06 -2.91 -0.02 -0.70 16 28 H 0.17 2.43 7.63 -2.91 -0.02 2.41 16 29 H 0.42 16.07 8.15 -92.71 -0.76 15.32 16 30 H 0.11 4.96 6.48 -2.91 -0.02 4.94 16 31 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 32 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 33 H 0.29 13.73 8.30 -92.70 -0.77 12.96 16 34 H 0.11 6.03 6.17 -2.91 -0.02 6.01 16 Total: -1.00 -71.49 315.14 4.53 -66.97 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.42 Total: 26.69 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 4.85 Total: -17.02 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -2.72 Total: -95.46 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.05 Total: -21.91 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -71.49 4.53 -66.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436285090.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.773 kcal (2) G-P(sol) polarization free energy of solvation -71.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds