Wall clock time and date at job start Tue Mar 31 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46956 * 43.43937 * 3 2 1 5 5 N 1.46504 * 109.47083 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00112 * 274.88738 * 5 4 3 7 7 C 1.50697 * 109.47070 * 284.74012 * 6 5 4 8 8 H 1.08010 * 119.99831 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00377 * 180.02562 * 7 6 5 10 10 N 1.31506 * 119.99813 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99996 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47337 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46653 * 120.00262 * 11 9 7 14 14 H 1.48497 * 109.47095 * 240.00012 * 11 9 7 15 15 C 1.34777 * 119.99839 * 94.87983 * 5 4 3 16 16 O 1.21599 * 119.99824 * 6.55885 * 15 5 4 17 17 C 1.47528 * 120.00185 * 186.55502 * 15 5 4 18 18 C 1.39998 * 120.58560 * 326.31943 * 17 15 5 19 19 C 1.38513 * 118.33127 * 179.97438 * 18 17 15 20 20 F 1.35095 * 120.29962 * 179.97438 * 19 18 17 21 21 C 1.38553 * 119.40414 * 0.02562 * 19 18 17 22 22 N 1.31890 * 121.14944 * 359.73540 * 21 19 18 23 23 C 1.32201 * 121.83262 * 0.53346 * 22 21 19 24 24 O 1.35475 * 119.77588 * 179.74640 * 23 22 21 25 25 H 1.08998 * 109.47244 * 283.43713 * 3 2 1 26 26 H 1.09003 * 109.46598 * 163.43207 * 3 2 1 27 27 H 1.08998 * 109.47327 * 59.99827 * 4 3 2 28 28 H 1.08994 * 109.46926 * 299.99333 * 4 3 2 29 29 H 1.09002 * 109.47260 * 44.74186 * 6 5 4 30 30 H 1.08999 * 109.47271 * 164.74433 * 6 5 4 31 31 H 0.97000 * 120.00282 * 180.02562 * 10 9 7 32 32 H 1.08009 * 120.83275 * 359.95330 * 18 17 15 33 33 H 1.07993 * 119.42265 * 180.02562 * 21 19 18 34 34 H 0.96697 * 114.00194 * 269.73056 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0465 -0.9919 5 7 4.5835 -1.0455 -0.9923 6 6 5.3151 -0.0974 -1.8362 7 6 5.2530 -0.5513 -3.2719 8 1 4.7214 -1.4554 -3.5299 9 6 5.8749 0.1874 -4.2561 10 7 6.5226 1.2879 -3.9418 11 14 5.7985 -0.3757 -6.0355 12 1 5.0156 -1.6345 -6.1233 13 1 5.1436 0.6726 -6.8586 14 1 7.1752 -0.6123 -6.5393 15 6 5.2582 -1.9166 -0.2162 16 8 4.6570 -2.7809 0.3922 17 6 6.7263 -1.8218 -0.1050 18 6 7.4978 -1.4033 -1.1956 19 6 8.8721 -1.3306 -1.0393 20 9 9.6547 -0.9322 -2.0659 21 6 9.4372 -1.6712 0.1790 22 7 8.6888 -2.0583 1.1937 23 6 7.3736 -2.1496 1.0952 24 8 6.6456 -2.5568 2.1627 25 1 2.9715 -0.2380 0.9995 26 1 2.9708 0.9859 -0.2931 27 1 2.7550 -0.8079 -1.9914 28 1 2.7557 -2.0317 -0.6989 29 1 4.8639 0.8909 -1.7478 30 1 6.3554 -0.0521 -1.5142 31 1 6.9598 1.8079 -4.6342 32 1 7.0330 -1.1439 -2.1355 33 1 10.5086 -1.6142 0.3013 34 1 6.5089 -3.5132 2.2038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464370235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:00 Heat of formation + Delta-G solvation = -35.827875 kcal Electronic energy + Delta-G solvation = -23347.354511 eV Core-core repulsion = 19582.499716 eV Total energy + Delta-G solvation = -3764.854795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.096 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.63161 -40.70111 -38.86924 -36.94164 -36.64485 -35.43685 -33.41934 -32.61661 -30.86349 -29.72340 -27.65454 -25.18593 -24.05539 -23.05106 -22.66186 -19.52486 -18.68054 -17.77954 -17.42905 -17.06217 -16.66481 -16.19662 -15.98310 -15.37767 -15.25038 -14.71172 -14.62105 -14.38540 -14.06316 -13.80522 -13.58142 -13.03178 -12.70394 -12.51441 -12.40433 -12.37196 -12.17589 -11.70428 -11.56609 -11.26923 -11.16428 -10.84148 -10.70949 -10.42508 -10.04717 -9.97899 -9.52023 -9.11347 -8.75097 -8.60886 -8.08958 -6.45087 -4.56011 0.69085 1.15379 2.78193 2.92710 3.04933 3.09194 3.19771 3.22219 3.41785 3.58392 3.87622 4.13127 4.24310 4.28429 4.72066 4.83833 4.86169 5.10156 5.20305 5.27201 5.40278 5.59985 5.63897 5.88221 6.00879 6.21061 6.23458 6.39446 6.67143 6.87535 7.14052 7.48684 7.56266 7.68321 7.70020 7.81925 7.97159 8.46807 8.63232 9.14318 10.60052 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.009300 B = 0.008404 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.146467 B = 3331.086261 C = 5885.464948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.222 3.778 3 C -0.046 4.046 4 C 0.126 3.874 5 N -0.585 5.585 6 C 0.206 3.794 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.071 3.929 10 N -0.877 5.877 11 Si 0.897 3.103 12 H -0.270 1.270 13 H -0.280 1.280 14 H -0.279 1.279 15 C 0.570 3.430 16 O -0.551 6.551 17 C -0.172 4.172 18 C -0.062 4.062 19 C 0.027 3.973 20 F -0.123 7.123 21 C 0.110 3.890 22 N -0.492 5.492 23 C 0.345 3.655 24 O -0.467 6.467 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.063 0.937 31 H 0.270 0.730 32 H 0.212 0.788 33 H 0.170 0.830 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 -3.567 5.432 7.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.096 4.096 3 C -0.087 4.087 4 C 0.001 3.999 5 N -0.314 5.314 6 C 0.087 3.913 7 C -0.592 4.592 8 H 0.087 0.913 9 C -0.135 4.135 10 N -0.513 5.513 11 Si 0.723 3.277 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.205 1.205 15 C 0.357 3.643 16 O -0.431 6.431 17 C -0.179 4.179 18 C -0.087 4.087 19 C 0.005 3.995 20 F -0.102 7.102 21 C -0.049 4.049 22 N -0.210 5.210 23 C 0.165 3.835 24 O -0.275 6.275 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.228 0.772 33 H 0.187 0.813 34 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.652 -3.464 6.581 7.896 hybrid contribution 0.346 -0.133 -2.108 2.141 sum 2.999 -3.596 4.473 6.476 Atomic orbital electron populations 1.81181 1.13037 1.09207 1.09199 1.29049 0.95058 0.92759 0.92758 1.19752 0.81443 1.03878 1.03643 1.21158 0.80649 0.98701 0.99411 1.48002 1.05769 1.35889 1.41779 1.20341 0.93608 0.88284 0.89070 1.21469 1.35840 1.10715 0.91136 0.91283 1.24987 0.94420 0.94442 0.99658 1.69906 1.32598 1.14413 1.34414 0.86440 0.78305 0.79081 0.83841 1.19400 1.20582 1.20463 1.17704 0.85791 0.81623 0.79132 1.90706 1.69415 1.35321 1.47627 1.20947 0.95752 1.07225 0.93967 1.23435 0.91881 0.90245 1.03178 1.18655 0.89541 1.04317 0.86954 1.91552 1.73486 1.88153 1.56978 1.22722 1.00522 0.95020 0.86591 1.67266 1.06124 1.16632 1.30979 1.19058 0.86055 0.93492 0.84859 1.84649 1.70132 1.29518 1.43195 0.87365 0.86832 0.88800 0.89434 0.94239 0.92023 0.91966 0.77158 0.81269 0.73501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.37 18.54 42.15 0.78 -6.59 16 2 C 0.22 3.12 15.43 -20.76 -0.32 2.80 16 3 C -0.05 -0.57 6.03 -29.52 -0.18 -0.75 16 4 C 0.13 1.90 5.42 -4.04 -0.02 1.88 16 5 N -0.59 -10.31 2.50 -176.29 -0.44 -10.75 16 6 C 0.21 4.11 4.72 -5.20 -0.02 4.09 16 7 C -0.55 -12.34 7.55 -34.44 -0.26 -12.60 16 8 H 0.07 1.57 7.81 -52.48 -0.41 1.16 16 9 C 0.07 1.65 5.45 -17.82 -0.10 1.55 16 10 N -0.88 -21.38 13.29 55.43 0.74 -20.65 16 11 Si 0.90 18.65 29.54 -169.99 -5.02 13.63 16 12 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 13 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 15 C 0.57 10.34 7.30 -12.47 -0.09 10.25 16 16 O -0.55 -10.48 15.39 -12.78 -0.20 -10.68 16 17 C -0.17 -2.98 5.54 -104.70 -0.58 -3.56 16 18 C -0.06 -1.10 7.53 -38.82 -0.29 -1.39 16 19 C 0.03 0.43 7.33 -39.36 -0.29 0.14 16 20 F -0.12 -2.05 17.28 2.25 0.04 -2.01 16 21 C 0.11 1.52 11.15 -17.41 -0.19 1.33 16 22 N -0.49 -7.54 10.37 -12.94 -0.13 -7.67 16 23 C 0.35 5.57 7.74 -16.64 -0.13 5.44 16 24 O -0.47 -6.96 12.17 -36.17 -0.44 -7.40 16 25 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.11 1.32 8.10 -51.93 -0.42 0.90 16 27 H 0.09 1.44 7.91 -51.93 -0.41 1.03 16 28 H 0.09 1.34 7.21 -51.93 -0.37 0.96 16 29 H 0.04 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.06 1.28 3.73 -52.44 -0.20 1.09 16 31 H 0.27 6.35 8.31 -40.82 -0.34 6.01 16 32 H 0.21 4.24 4.01 -52.48 -0.21 4.03 16 33 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.41 4.45 9.06 45.56 0.41 4.86 16 LS Contribution 312.02 15.07 4.70 4.70 Total: -1.00 -27.32 312.02 -4.46 -31.78 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -2.01 Total: 6.47 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -2.48 Total: 9.18 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.94 Total: -45.66 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.64 Total: -18.08 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.32 -4.46 -31.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464370235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.053 kcal (2) G-P(sol) polarization free energy of solvation -27.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds