Wall clock time and date at job start Tue Mar 31 2020 06:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46956 * 43.43937 * 3 2 1 5 5 N 1.46504 * 109.47083 * 179.97438 * 4 3 2 6 6 C 1.46498 * 120.00112 * 274.88738 * 5 4 3 7 7 C 1.50697 * 109.47070 * 284.74012 * 6 5 4 8 8 H 1.08010 * 119.99831 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00377 * 180.02562 * 7 6 5 10 10 N 1.31506 * 119.99813 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99996 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47337 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46653 * 120.00262 * 11 9 7 14 14 H 1.48497 * 109.47095 * 240.00012 * 11 9 7 15 15 C 1.34777 * 119.99839 * 94.87983 * 5 4 3 16 16 O 1.21599 * 119.99824 * 6.55885 * 15 5 4 17 17 C 1.47528 * 120.00185 * 186.55502 * 15 5 4 18 18 C 1.39998 * 120.58560 * 326.31943 * 17 15 5 19 19 C 1.38513 * 118.33127 * 179.97438 * 18 17 15 20 20 F 1.35095 * 120.29962 * 179.97438 * 19 18 17 21 21 C 1.38553 * 119.40414 * 0.02562 * 19 18 17 22 22 N 1.31890 * 121.14944 * 359.73540 * 21 19 18 23 23 C 1.32201 * 121.83262 * 0.53346 * 22 21 19 24 24 O 1.35475 * 119.77588 * 179.74640 * 23 22 21 25 25 H 1.08998 * 109.47244 * 283.43713 * 3 2 1 26 26 H 1.09003 * 109.46598 * 163.43207 * 3 2 1 27 27 H 1.08998 * 109.47327 * 59.99827 * 4 3 2 28 28 H 1.08994 * 109.46926 * 299.99333 * 4 3 2 29 29 H 1.09002 * 109.47260 * 44.74186 * 6 5 4 30 30 H 1.08999 * 109.47271 * 164.74433 * 6 5 4 31 31 H 0.97000 * 120.00282 * 180.02562 * 10 9 7 32 32 H 1.08009 * 120.83275 * 359.95330 * 18 17 15 33 33 H 1.07993 * 119.42265 * 180.02562 * 21 19 18 34 34 H 0.96697 * 114.00194 * 269.73056 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0465 -0.9919 5 7 4.5835 -1.0455 -0.9923 6 6 5.3151 -0.0974 -1.8362 7 6 5.2530 -0.5513 -3.2719 8 1 4.7214 -1.4554 -3.5299 9 6 5.8749 0.1874 -4.2561 10 7 6.5226 1.2879 -3.9418 11 14 5.7985 -0.3757 -6.0355 12 1 5.0156 -1.6345 -6.1233 13 1 5.1436 0.6726 -6.8586 14 1 7.1752 -0.6123 -6.5393 15 6 5.2582 -1.9166 -0.2162 16 8 4.6570 -2.7809 0.3922 17 6 6.7263 -1.8218 -0.1050 18 6 7.4978 -1.4033 -1.1956 19 6 8.8721 -1.3306 -1.0393 20 9 9.6547 -0.9322 -2.0659 21 6 9.4372 -1.6712 0.1790 22 7 8.6888 -2.0583 1.1937 23 6 7.3736 -2.1496 1.0952 24 8 6.6456 -2.5568 2.1627 25 1 2.9715 -0.2380 0.9995 26 1 2.9708 0.9859 -0.2931 27 1 2.7550 -0.8079 -1.9914 28 1 2.7557 -2.0317 -0.6989 29 1 4.8639 0.8909 -1.7478 30 1 6.3554 -0.0521 -1.5142 31 1 6.9598 1.8079 -4.6342 32 1 7.0330 -1.1439 -2.1355 33 1 10.5086 -1.6142 0.3013 34 1 6.5089 -3.5132 2.2038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464370235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:00 Heat of formation + Delta-G solvation = -53.874591 kcal Electronic energy + Delta-G solvation = -23348.137076 eV Core-core repulsion = 19582.499716 eV Total energy + Delta-G solvation = -3765.637360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.096 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.91072 -42.00191 -40.20481 -38.17581 -37.86296 -36.87071 -34.89923 -34.10223 -32.13773 -30.96819 -29.27654 -26.43786 -25.51064 -24.50856 -23.95181 -20.87901 -19.89247 -19.06582 -18.77621 -18.46995 -18.16667 -17.50883 -17.24122 -16.73902 -16.57211 -16.25954 -15.82898 -15.78433 -15.27734 -15.18510 -14.88108 -14.40615 -14.27275 -13.82020 -13.65252 -13.60791 -13.49472 -13.05485 -12.89777 -12.74894 -12.70952 -12.38729 -12.13414 -11.82836 -11.70650 -11.37201 -10.92627 -10.61226 -10.30269 -9.86419 -9.55551 -8.22861 -6.36716 -0.54225 -0.13241 1.42052 1.48770 1.54847 1.55494 1.76201 1.77822 2.10296 2.34934 2.42202 2.64546 2.99031 3.08244 3.11867 3.43639 3.62338 3.84436 4.01925 4.11167 4.20398 4.41994 4.54964 4.63120 4.79999 4.88322 4.97261 5.02922 5.25632 5.40865 5.62304 5.72922 5.99550 6.41814 6.47808 6.54097 6.69590 6.77105 7.14432 7.36309 8.81464 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.009300 B = 0.008404 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.146467 B = 3331.086261 C = 5885.464948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.032 4.032 4 C 0.123 3.877 5 N -0.585 5.585 6 C 0.217 3.783 7 C -0.551 4.551 8 H 0.060 0.940 9 C 0.035 3.965 10 N -0.903 5.903 11 Si 0.943 3.057 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.280 1.280 15 C 0.569 3.431 16 O -0.562 6.562 17 C -0.187 4.187 18 C -0.072 4.072 19 C 0.019 3.981 20 F -0.129 7.129 21 C 0.135 3.865 22 N -0.494 5.494 23 C 0.352 3.648 24 O -0.473 6.473 25 H 0.123 0.877 26 H 0.128 0.872 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.032 0.968 30 H 0.060 0.940 31 H 0.270 0.730 32 H 0.186 0.814 33 H 0.213 0.787 34 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -3.941 6.261 9.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.073 4.073 4 C -0.001 4.001 5 N -0.314 5.314 6 C 0.097 3.903 7 C -0.589 4.589 8 H 0.079 0.921 9 C -0.168 4.168 10 N -0.541 5.541 11 Si 0.769 3.231 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.206 1.206 15 C 0.357 3.643 16 O -0.443 6.443 17 C -0.194 4.194 18 C -0.097 4.097 19 C -0.003 4.003 20 F -0.108 7.108 21 C -0.024 4.024 22 N -0.212 5.212 23 C 0.172 3.828 24 O -0.283 6.283 25 H 0.141 0.859 26 H 0.146 0.854 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.203 0.797 33 H 0.229 0.771 34 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 3.590 -3.861 7.418 9.100 hybrid contribution 0.094 -0.080 -2.317 2.320 sum 3.684 -3.941 5.101 7.425 Atomic orbital electron populations 1.81209 1.14234 1.10570 1.10578 1.29152 0.95010 0.91494 0.91487 1.19683 0.80244 1.03702 1.03639 1.21232 0.79373 0.99531 1.00003 1.47936 1.06592 1.35442 1.41408 1.20066 0.93757 0.88154 0.88297 1.21614 1.34854 1.10015 0.92407 0.92142 1.25486 0.94502 0.94629 1.02152 1.69968 1.33766 1.15340 1.35027 0.85724 0.77943 0.78477 0.80932 1.19458 1.20748 1.20593 1.17859 0.86265 0.81324 0.78882 1.90690 1.69826 1.35624 1.48186 1.20880 0.95230 1.08702 0.94581 1.23149 0.92947 0.91284 1.02367 1.18747 0.88869 1.04997 0.87697 1.91537 1.73454 1.88343 1.57452 1.23312 1.02139 0.92027 0.84931 1.67430 1.05665 1.16919 1.31225 1.19098 0.86405 0.92709 0.84554 1.84602 1.70046 1.31130 1.42506 0.85927 0.85443 0.89254 0.89548 0.94993 0.92267 0.92097 0.79690 0.77081 0.71538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.69 18.54 20.01 0.37 -15.32 16 2 C 0.25 6.63 15.43 89.44 1.38 8.01 16 3 C -0.03 -0.75 6.03 28.79 0.17 -0.57 16 4 C 0.12 3.62 5.42 86.38 0.47 4.09 16 5 N -0.58 -20.31 2.50 -829.92 -2.07 -22.39 16 6 C 0.22 8.67 4.72 85.63 0.40 9.08 16 7 C -0.55 -24.63 7.55 25.60 0.19 -24.44 16 8 H 0.06 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.04 1.64 5.45 84.66 0.46 2.10 16 10 N -0.90 -44.23 13.29 21.45 0.28 -43.94 16 11 Si 0.94 38.24 29.54 68.60 2.03 40.27 16 12 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 13 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 14 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 15 C 0.57 20.20 7.30 86.69 0.63 20.83 16 16 O -0.56 -20.80 15.39 13.24 0.20 -20.60 16 17 C -0.19 -6.30 5.54 -19.91 -0.11 -6.41 16 18 C -0.07 -2.51 7.53 22.76 0.17 -2.34 16 19 C 0.02 0.56 7.33 22.41 0.16 0.73 16 20 F -0.13 -4.16 17.28 44.97 0.78 -3.39 16 21 C 0.13 3.33 11.15 84.76 0.95 4.27 16 22 N -0.49 -13.79 10.37 -307.85 -3.19 -16.99 16 23 C 0.35 10.69 7.74 85.13 0.66 11.34 16 24 O -0.47 -13.12 12.17 -70.47 -0.86 -13.98 16 25 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.13 2.74 8.10 -2.39 -0.02 2.72 16 27 H 0.09 2.70 7.91 -2.39 -0.02 2.68 16 28 H 0.09 2.58 7.21 -2.39 -0.02 2.56 16 29 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16 30 H 0.06 2.48 3.73 -2.87 -0.01 2.46 16 31 H 0.27 12.73 8.31 -92.71 -0.77 11.96 16 32 H 0.19 7.54 4.01 -2.91 -0.01 7.53 16 33 H 0.21 3.37 8.06 -2.91 -0.02 3.35 16 34 H 0.42 8.40 9.06 -74.06 -0.67 7.73 16 Total: -1.00 -57.11 312.02 3.60 -53.51 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.52 Total: 16.13 kcal Atomic # 6 Polarization: 21.15 SS G_CDS: 5.54 Total: 26.69 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -4.61 Total: -98.63 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.65 Total: -34.57 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -57.11 3.60 -53.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464370235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.368 kcal (2) G-P(sol) polarization free energy of solvation -57.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds