Wall clock time and date at job start Tue Mar 31 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39911 * 120.89680 * 353.18147 * 3 2 1 5 5 C 1.38399 * 119.18343 * 179.97438 * 4 3 2 6 6 N 1.31517 * 121.05221 * 359.72086 * 5 4 3 7 7 C 1.32727 * 121.97753 * 0.57158 * 6 5 4 8 8 C 1.48123 * 119.65626 * 179.70463 * 7 6 5 9 9 O 1.21530 * 120.00361 * 179.73066 * 8 7 6 10 10 N 1.34780 * 120.00127 * 359.72837 * 8 7 6 11 11 C 1.39843 * 120.00099 * 185.09480 * 10 8 7 12 12 C 1.39322 * 119.95216 * 33.31696 * 11 10 8 13 13 C 1.38479 * 120.42441 * 180.27888 * 12 11 10 14 14 C 1.37687 * 120.32706 * 359.45131 * 13 12 11 15 15 C 1.40744 * 119.89119 * 0.26872 * 14 13 12 16 16 C 1.41405 * 120.20917 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99602 * 209.19156 * 16 15 14 18 18 C 1.39927 * 120.00300 * 29.19479 * 16 15 14 19 19 N 1.30829 * 119.99748 * 15.63402 * 18 16 15 20 20 Si 1.86803 * 120.00224 * 195.63728 * 18 16 15 21 21 H 1.48502 * 109.46963 * 59.99823 * 20 18 16 22 22 H 1.48495 * 109.46834 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47100 * 299.99914 * 20 18 16 24 24 C 1.38270 * 119.95313 * 213.04516 * 11 10 8 25 25 C 1.39186 * 120.68420 * 359.43153 * 7 6 5 26 26 H 1.07999 * 120.41035 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.47820 * 180.02562 * 5 4 3 28 28 H 0.97003 * 120.00030 * 5.09200 * 10 8 7 29 29 H 1.07998 * 119.78446 * 0.02796 * 12 11 10 30 30 H 1.08003 * 119.83216 * 179.72146 * 13 12 11 31 31 H 1.07999 * 120.05555 * 180.29911 * 14 13 12 32 32 H 0.97002 * 120.00006 * 179.97438 * 19 18 16 33 33 H 1.08007 * 120.15648 * 359.97438 * 24 11 10 34 34 H 1.08004 * 120.55440 * 180.29127 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2870 -1.1911 0.1425 5 6 4.6703 -1.1495 0.1371 6 7 5.3142 -0.0115 -0.0050 7 6 4.6767 1.1450 -0.1378 8 6 5.4536 2.3971 -0.2881 9 8 4.8764 3.4590 -0.4151 10 7 6.8009 2.3589 -0.2839 11 6 7.5343 3.5491 -0.3184 12 6 7.0388 4.6899 0.3092 13 6 7.7541 5.8752 0.2762 14 6 8.9694 5.9360 -0.3682 15 6 9.4855 4.7901 -1.0018 16 6 10.7326 4.8452 -1.6660 17 1 10.9248 4.1971 -2.5083 18 6 11.7176 5.7394 -1.2321 19 7 11.6204 6.2978 -0.0530 20 14 13.1712 6.1357 -2.3364 21 1 12.6808 6.7304 -3.6057 22 1 14.0649 7.1028 -1.6500 23 1 13.9229 4.8896 -2.6315 24 6 8.7528 3.5904 -0.9706 25 6 3.2857 1.1927 -0.1431 26 1 2.7689 -2.1321 0.2546 27 1 5.2301 -2.0667 0.2464 28 1 7.2618 1.5058 -0.2570 29 1 6.0887 4.6507 0.8213 30 1 7.3589 6.7550 0.7621 31 1 9.5258 6.8614 -0.3871 32 1 12.3034 6.9174 0.2480 33 1 9.1402 2.7053 -1.4534 34 1 2.7690 2.1345 -0.2560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001545046031.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:55 Heat of formation + Delta-G solvation = 56.158880 kcal Electronic energy + Delta-G solvation = -20842.459694 eV Core-core repulsion = 17512.362969 eV Total energy + Delta-G solvation = -3330.096726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02253 -39.37353 -37.26919 -37.05445 -34.57005 -33.43371 -32.89163 -31.91552 -29.84768 -28.35801 -25.62233 -25.23119 -24.54450 -22.16430 -21.04252 -20.45985 -19.09713 -17.70595 -17.34859 -16.43315 -16.40362 -15.51647 -15.38143 -15.10395 -14.88501 -14.66048 -14.29019 -14.09489 -13.51636 -13.48420 -13.45071 -12.99180 -12.89095 -12.32345 -12.25293 -11.73317 -11.39574 -11.12607 -10.72404 -10.62780 -10.41023 -10.33927 -10.16448 -9.78001 -9.68895 -9.55143 -9.25338 -8.98043 -7.46302 -6.93469 -6.73897 -4.37988 0.01657 0.37962 2.10043 2.24179 2.69764 2.82266 3.05416 3.08154 3.10807 3.13262 3.24157 3.37801 3.68259 3.90255 3.95889 4.28489 4.43762 4.51541 4.65736 4.95939 5.13784 5.24849 5.45414 5.65941 5.97053 6.25436 6.48779 6.67371 6.89920 6.90871 6.93060 7.02003 7.22326 7.26918 7.53340 7.63391 7.91628 8.02058 8.06952 8.26963 8.47140 8.63521 8.88886 8.93977 10.23086 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.036853 B = 0.002854 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.601262 B = 9808.444072 C =10299.216551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.254 3.746 3 C 0.015 3.985 4 C -0.109 4.109 5 C 0.107 3.893 6 N -0.440 5.440 7 C 0.098 3.902 8 C 0.559 3.441 9 O -0.512 6.512 10 N -0.639 5.639 11 C 0.147 3.853 12 C -0.222 4.222 13 C -0.096 4.096 14 C -0.160 4.160 15 C 0.124 3.876 16 C -0.468 4.468 17 H 0.077 0.923 18 C 0.077 3.923 19 N -0.799 5.799 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.237 4.237 25 C -0.069 4.069 26 H 0.151 0.849 27 H 0.176 0.824 28 H 0.412 0.588 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.280 0.720 33 H 0.098 0.902 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.605 -13.338 1.147 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.063 4.063 3 C 0.004 3.996 4 C -0.132 4.132 5 C -0.052 4.052 6 N -0.152 5.152 7 C -0.041 4.041 8 C 0.343 3.657 9 O -0.387 6.387 10 N -0.282 5.282 11 C 0.055 3.945 12 C -0.243 4.243 13 C -0.115 4.115 14 C -0.179 4.179 15 C 0.121 3.879 16 C -0.498 4.498 17 H 0.095 0.905 18 C -0.140 4.140 19 N -0.424 5.424 20 Si 0.733 3.267 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.258 4.258 25 C -0.092 4.092 26 H 0.169 0.831 27 H 0.193 0.807 28 H 0.248 0.752 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.733 -12.389 1.226 16.437 hybrid contribution 0.455 -0.345 -0.346 0.668 sum -10.277 -12.734 0.880 16.388 Atomic orbital electron populations 1.81296 1.11668 1.06610 1.07285 1.25316 0.92199 0.94326 0.94438 1.16116 0.85177 0.94766 1.03572 1.22463 0.95813 0.97903 0.96991 1.22864 0.90938 0.96306 0.95114 1.67565 1.41458 0.98171 1.07966 1.21289 0.91074 0.92716 0.99010 1.17730 0.82720 0.86837 0.78390 1.90835 1.69910 1.29508 1.48423 1.43274 1.05167 1.09771 1.69980 1.17449 0.92429 0.84978 0.99616 1.20333 1.01855 0.93311 1.08783 1.20580 0.95375 0.95923 0.99666 1.21319 0.94710 0.98959 1.02928 1.17356 0.91663 0.89452 0.89419 1.19448 0.97484 1.18731 1.14173 0.90478 1.25852 0.99561 0.94075 0.94519 1.69804 1.33598 1.22919 1.16116 0.86373 0.80320 0.79065 0.80959 1.18891 1.20420 1.19081 1.20755 0.97409 0.98356 1.09313 1.22206 0.94013 0.98783 0.94237 0.83093 0.80724 0.75206 0.87932 0.88888 0.86694 0.90866 0.88419 0.82181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -4.51 18.54 41.84 0.78 -3.74 16 2 C 0.25 2.34 15.40 -22.47 -0.35 2.00 16 3 C 0.01 0.12 5.75 -106.73 -0.61 -0.50 16 4 C -0.11 -0.60 9.86 -38.90 -0.38 -0.99 16 5 C 0.11 0.69 11.17 -17.63 -0.20 0.49 16 6 N -0.44 -4.55 9.52 -9.88 -0.09 -4.65 16 7 C 0.10 1.20 6.75 -83.07 -0.56 0.64 16 8 C 0.56 9.36 7.55 -12.20 -0.09 9.27 16 9 O -0.51 -10.13 13.98 5.34 0.07 -10.06 16 10 N -0.64 -11.34 5.32 -10.68 -0.06 -11.40 16 11 C 0.15 3.25 6.27 -83.79 -0.53 2.72 16 12 C -0.22 -5.14 8.66 -39.09 -0.34 -5.48 16 13 C -0.10 -2.29 10.01 -39.69 -0.40 -2.69 16 14 C -0.16 -4.11 8.66 -38.84 -0.34 -4.45 16 15 C 0.12 3.24 5.52 -106.85 -0.59 2.65 16 16 C -0.47 -12.17 9.04 -37.75 -0.34 -12.51 16 17 H 0.08 1.92 7.89 -52.48 -0.41 1.50 16 18 C 0.08 1.91 5.15 -17.35 -0.09 1.82 16 19 N -0.80 -20.42 11.15 55.55 0.62 -19.80 16 20 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 22 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 24 C -0.24 -5.61 9.70 -38.68 -0.38 -5.99 16 25 C -0.07 -0.71 9.38 -38.62 -0.36 -1.07 16 26 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 27 H 0.18 0.52 8.06 -52.48 -0.42 0.10 16 28 H 0.41 6.24 8.15 -40.82 -0.33 5.91 16 29 H 0.10 2.31 6.39 -52.49 -0.34 1.98 16 30 H 0.09 1.98 8.06 -52.48 -0.42 1.56 16 31 H 0.12 3.04 6.43 -52.49 -0.34 2.70 16 32 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 33 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 34 H 0.16 1.65 7.64 -52.48 -0.40 1.25 16 LS Contribution 315.31 15.07 4.75 4.75 Total: -1.00 -30.50 315.31 -7.15 -37.66 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -2.65 Total: 7.89 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -5.55 Total: -14.06 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 1.24 Total: -39.58 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.50 -7.15 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001545046031.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.814 kcal (2) G-P(sol) polarization free energy of solvation -30.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds