Wall clock time and date at job start Tue Mar 31 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39911 * 120.89680 * 353.18147 * 3 2 1 5 5 C 1.38399 * 119.18343 * 179.97438 * 4 3 2 6 6 N 1.31517 * 121.05221 * 359.72086 * 5 4 3 7 7 C 1.32727 * 121.97753 * 0.57158 * 6 5 4 8 8 C 1.48123 * 119.65626 * 179.70463 * 7 6 5 9 9 O 1.21530 * 120.00361 * 179.73066 * 8 7 6 10 10 N 1.34780 * 120.00127 * 359.72837 * 8 7 6 11 11 C 1.39843 * 120.00099 * 185.09480 * 10 8 7 12 12 C 1.39322 * 119.95216 * 33.31696 * 11 10 8 13 13 C 1.38479 * 120.42441 * 180.27888 * 12 11 10 14 14 C 1.37687 * 120.32706 * 359.45131 * 13 12 11 15 15 C 1.40744 * 119.89119 * 0.26872 * 14 13 12 16 16 C 1.41405 * 120.20917 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99602 * 209.19156 * 16 15 14 18 18 C 1.39927 * 120.00300 * 29.19479 * 16 15 14 19 19 N 1.30829 * 119.99748 * 15.63402 * 18 16 15 20 20 Si 1.86803 * 120.00224 * 195.63728 * 18 16 15 21 21 H 1.48502 * 109.46963 * 59.99823 * 20 18 16 22 22 H 1.48495 * 109.46834 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47100 * 299.99914 * 20 18 16 24 24 C 1.38270 * 119.95313 * 213.04516 * 11 10 8 25 25 C 1.39186 * 120.68420 * 359.43153 * 7 6 5 26 26 H 1.07999 * 120.41035 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.47820 * 180.02562 * 5 4 3 28 28 H 0.97003 * 120.00030 * 5.09200 * 10 8 7 29 29 H 1.07998 * 119.78446 * 0.02796 * 12 11 10 30 30 H 1.08003 * 119.83216 * 179.72146 * 13 12 11 31 31 H 1.07999 * 120.05555 * 180.29911 * 14 13 12 32 32 H 0.97002 * 120.00006 * 179.97438 * 19 18 16 33 33 H 1.08007 * 120.15648 * 359.97438 * 24 11 10 34 34 H 1.08004 * 120.55440 * 180.29127 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2870 -1.1911 0.1425 5 6 4.6703 -1.1495 0.1371 6 7 5.3142 -0.0115 -0.0050 7 6 4.6767 1.1450 -0.1378 8 6 5.4536 2.3971 -0.2881 9 8 4.8764 3.4590 -0.4151 10 7 6.8009 2.3589 -0.2839 11 6 7.5343 3.5491 -0.3184 12 6 7.0388 4.6899 0.3092 13 6 7.7541 5.8752 0.2762 14 6 8.9694 5.9360 -0.3682 15 6 9.4855 4.7901 -1.0018 16 6 10.7326 4.8452 -1.6660 17 1 10.9248 4.1971 -2.5083 18 6 11.7176 5.7394 -1.2321 19 7 11.6204 6.2978 -0.0530 20 14 13.1712 6.1357 -2.3364 21 1 12.6808 6.7304 -3.6057 22 1 14.0649 7.1028 -1.6500 23 1 13.9229 4.8896 -2.6315 24 6 8.7528 3.5904 -0.9706 25 6 3.2857 1.1927 -0.1431 26 1 2.7689 -2.1321 0.2546 27 1 5.2301 -2.0667 0.2464 28 1 7.2618 1.5058 -0.2570 29 1 6.0887 4.6507 0.8213 30 1 7.3589 6.7550 0.7621 31 1 9.5258 6.8614 -0.3871 32 1 12.3034 6.9174 0.2480 33 1 9.1402 2.7053 -1.4534 34 1 2.7690 2.1345 -0.2560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001545046031.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:54 Heat of formation + Delta-G solvation = 37.606121 kcal Electronic energy + Delta-G solvation = -20843.264202 eV Core-core repulsion = 17512.362969 eV Total energy + Delta-G solvation = -3330.901234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.090 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.95737 -40.64871 -38.93379 -37.90562 -36.19975 -34.94243 -33.90462 -32.72037 -31.74803 -30.02916 -27.17510 -26.40928 -25.44274 -23.38271 -22.81939 -21.95712 -20.28534 -19.41351 -18.27563 -17.66343 -17.16257 -17.04399 -16.73714 -16.56360 -16.20233 -15.83833 -15.41173 -15.18636 -14.89860 -14.60219 -14.27406 -14.25955 -14.18132 -14.04673 -13.54898 -13.17881 -12.99802 -12.79612 -12.50333 -12.35998 -11.97809 -11.55911 -11.33545 -11.10789 -11.04937 -10.85265 -10.66646 -10.38036 -9.37607 -8.72798 -8.59625 -6.34535 -0.69662 -0.34691 0.88140 0.99350 1.35276 1.42287 1.50778 1.54229 1.61614 2.00515 2.03325 2.25218 2.51100 2.74801 2.82939 3.02548 3.65770 3.68689 3.74394 3.79897 4.26947 4.40804 4.47275 4.62606 4.66168 4.84880 5.01129 5.02645 5.11885 5.19173 5.34089 5.39194 5.73134 5.82648 6.07823 6.10653 6.19267 6.25224 6.49150 6.67808 6.72444 6.95360 6.97783 7.16184 8.39405 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.036853 B = 0.002854 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.601262 B = 9808.444072 C =10299.216551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.278 3.722 3 C 0.012 3.988 4 C -0.069 4.069 5 C 0.115 3.885 6 N -0.455 5.455 7 C 0.073 3.927 8 C 0.560 3.440 9 O -0.550 6.550 10 N -0.638 5.638 11 C 0.159 3.841 12 C -0.233 4.233 13 C -0.097 4.097 14 C -0.187 4.187 15 C 0.097 3.903 16 C -0.500 4.500 17 H 0.079 0.921 18 C 0.036 3.964 19 N -0.829 5.829 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.257 1.257 24 C -0.248 4.248 25 C -0.069 4.069 26 H 0.196 0.804 27 H 0.220 0.780 28 H 0.424 0.576 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.100 0.900 32 H 0.288 0.712 33 H 0.111 0.889 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.814 -16.364 1.038 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.037 4.037 3 C 0.001 3.999 4 C -0.091 4.091 5 C -0.045 4.045 6 N -0.167 5.167 7 C -0.063 4.063 8 C 0.347 3.653 9 O -0.427 6.427 10 N -0.282 5.282 11 C 0.066 3.934 12 C -0.254 4.254 13 C -0.116 4.116 14 C -0.207 4.207 15 C 0.094 3.906 16 C -0.530 4.530 17 H 0.097 0.903 18 C -0.179 4.179 19 N -0.455 5.455 20 Si 0.803 3.197 21 H -0.187 1.187 22 H -0.194 1.194 23 H -0.182 1.182 24 C -0.270 4.270 25 C -0.092 4.092 26 H 0.213 0.787 27 H 0.236 0.764 28 H 0.263 0.737 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.962 -15.437 1.125 18.966 hybrid contribution 0.377 0.403 -0.250 0.605 sum -10.585 -15.034 0.875 18.407 Atomic orbital electron populations 1.81333 1.12862 1.07875 1.08846 1.25333 0.92114 0.93125 0.93159 1.16070 0.84383 0.94969 1.04475 1.22993 0.95464 0.98426 0.92201 1.23642 0.91626 0.96146 0.93071 1.67486 1.42304 0.98562 1.08333 1.20453 0.90888 0.91671 1.03267 1.18394 0.82154 0.88248 0.76496 1.90801 1.70469 1.31644 1.49801 1.43197 1.05712 1.08822 1.70504 1.17471 0.92036 0.86295 0.97639 1.20494 1.02002 0.93656 1.09240 1.20806 0.94759 0.97024 0.99047 1.21249 0.95745 0.98599 1.05137 1.17728 0.92469 0.90390 0.89981 1.19731 0.98197 1.20223 1.14846 0.90260 1.26724 1.02221 0.93276 0.95637 1.69870 1.34833 1.23275 1.17558 0.85250 0.76631 0.79133 0.78669 1.18708 1.19438 1.18152 1.20909 0.98061 0.98227 1.09807 1.22059 0.93310 0.99507 0.94349 0.78654 0.76395 0.73711 0.87481 0.87036 0.88234 0.90195 0.87085 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.32 18.54 19.01 0.35 -8.97 16 2 C 0.28 4.53 15.40 88.33 1.36 5.89 16 3 C 0.01 0.16 5.75 -21.23 -0.12 0.04 16 4 C -0.07 -0.40 9.86 22.71 0.22 -0.17 16 5 C 0.12 0.91 11.17 84.78 0.95 1.86 16 6 N -0.45 -8.16 9.52 -185.17 -1.76 -9.92 16 7 C 0.07 1.72 6.75 41.86 0.28 2.01 16 8 C 0.56 18.87 7.55 86.87 0.66 19.53 16 9 O -0.55 -22.36 13.98 -3.81 -0.05 -22.42 16 10 N -0.64 -22.68 5.32 -305.99 -1.63 -24.31 16 11 C 0.16 7.15 6.27 38.13 0.24 7.39 16 12 C -0.23 -11.05 8.66 22.59 0.20 -10.86 16 13 C -0.10 -4.79 10.01 22.20 0.22 -4.56 16 14 C -0.19 -10.09 8.66 22.75 0.20 -9.89 16 15 C 0.10 5.26 5.52 -21.31 -0.12 5.15 16 16 C -0.50 -26.70 9.04 23.46 0.21 -26.49 16 17 H 0.08 4.03 7.89 -2.91 -0.02 4.01 16 18 C 0.04 1.81 5.15 85.25 0.44 2.25 16 19 N -0.83 -43.45 11.15 21.82 0.24 -43.21 16 20 Si 0.98 37.92 29.59 68.60 2.03 39.95 16 21 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 23 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 24 C -0.25 -12.06 9.70 22.86 0.22 -11.84 16 25 C -0.07 -1.33 9.38 22.90 0.21 -1.11 16 26 H 0.20 -0.46 8.06 -2.91 -0.02 -0.48 16 27 H 0.22 -0.15 8.06 -2.91 -0.02 -0.17 16 28 H 0.42 12.63 8.15 -92.71 -0.76 11.87 16 29 H 0.11 4.94 6.39 -2.91 -0.02 4.92 16 30 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 31 H 0.10 5.55 6.43 -2.91 -0.02 5.53 16 32 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 33 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 34 H 0.15 3.14 7.64 -2.91 -0.02 3.12 16 Total: -1.00 -70.29 315.31 4.77 -65.52 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.42 Total: 24.18 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 5.17 Total: -20.83 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -2.80 Total: -86.40 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -70.29 4.77 -65.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001545046031.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.129 kcal (2) G-P(sol) polarization free energy of solvation -70.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds