Wall clock time and date at job start Tue Mar 31 2020 06:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00283 * 2 1 4 4 H 1.48495 * 109.47357 * 270.00167 * 3 2 1 5 5 H 1.48498 * 109.46911 * 30.00221 * 3 2 1 6 6 H 1.48504 * 109.46982 * 149.99868 * 3 2 1 7 7 C 1.37882 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99546 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46921 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47123 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47047 * 179.97438 * 11 10 9 13 13 C 1.35031 * 125.93553 * 125.00224 * 12 11 10 14 14 C 1.35094 * 107.97346 * 179.97438 * 13 12 11 15 15 N 1.48020 * 126.07447 * 179.97438 * 14 13 12 16 16 O 1.21803 * 119.99894 * 0.02562 * 15 14 13 17 17 O 1.21799 * 119.99903 * 179.75030 * 15 14 13 18 18 C 1.40813 * 107.84920 * 0.22227 * 14 13 12 19 19 C 1.48489 * 126.03315 * 179.77343 * 18 14 13 20 20 N 1.34039 * 126.67395 * 359.69178 * 19 18 14 21 21 N 1.28985 * 107.27064 * 179.87044 * 20 19 18 22 22 N 1.28731 * 108.94208 * 0.39651 * 21 20 19 23 23 H 0.96997 * 125.34610 * 179.76741 * 22 21 20 24 24 N 1.28874 * 109.31057 * 359.74638 * 22 21 20 25 25 N 1.31593 * 107.93306 * 359.62232 * 18 14 13 26 26 H 0.97006 * 119.99872 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47302 * 60.00692 * 9 7 2 28 28 H 1.08999 * 109.46968 * 300.00239 * 9 7 2 29 29 H 1.08997 * 109.47582 * 59.99556 * 10 9 7 30 30 H 1.09008 * 109.46992 * 300.00273 * 10 9 7 31 31 H 1.08997 * 109.47194 * 60.00146 * 11 10 9 32 32 H 1.08996 * 109.47580 * 299.99636 * 11 10 9 33 33 H 1.08001 * 126.00883 * 0.03236 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 0.0001 12 7 2.4320 -6.1007 -0.0005 13 6 2.4709 -7.1105 0.8951 14 6 3.4870 -7.9323 0.5528 15 7 3.8873 -9.1667 1.2649 16 8 3.2778 -9.5218 2.2579 17 8 4.8229 -9.8301 0.8549 18 6 4.1014 -7.4029 -0.5983 19 6 5.2655 -7.9847 -1.3132 20 7 5.9299 -9.1017 -0.9850 21 7 6.8674 -9.2597 -1.8567 22 7 6.8194 -8.2903 -2.7023 23 1 7.4186 -8.1731 -3.4561 24 7 5.8501 -7.5004 -2.3906 25 7 3.4596 -6.3031 -0.9306 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6245 -2.5570 0.8897 29 1 2.8718 -3.6044 0.8894 30 1 2.8718 -3.6044 -0.8906 31 1 0.8531 -5.0451 -0.8896 32 1 0.8537 -5.0446 0.8903 33 1 1.8060 -7.2390 1.7364 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676465.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:14 Heat of formation + Delta-G solvation = 205.630536 kcal Electronic energy + Delta-G solvation = -22265.939167 eV Core-core repulsion = 18563.767507 eV Total energy + Delta-G solvation = -3702.171660 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.102 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.68891 -42.42014 -41.27842 -36.30581 -35.69738 -34.52926 -33.84978 -32.82970 -31.42271 -31.06625 -27.71044 -26.08912 -25.10550 -24.68888 -23.11913 -21.64247 -21.26354 -20.50703 -19.64743 -18.64528 -18.21729 -17.55875 -17.20715 -16.88589 -16.42295 -15.81313 -15.30731 -14.56455 -14.42083 -14.21362 -13.93873 -12.82740 -12.52434 -12.35986 -12.24205 -11.76765 -11.59798 -11.56599 -11.40058 -11.11677 -11.02119 -10.94442 -10.85533 -10.78691 -10.71383 -10.10706 -9.93394 -9.84483 -9.48691 -9.26902 -8.53345 -6.18515 -4.21880 0.26081 0.67505 1.08343 1.21963 1.71230 1.82012 2.16082 2.55658 3.18899 3.21852 3.28824 3.31898 3.55677 4.14021 4.31841 4.39593 4.56402 4.85109 5.00120 5.12792 5.18735 5.26176 5.34245 5.42905 5.97849 6.13142 6.15837 6.45580 6.55888 6.67635 6.75958 7.37958 7.46939 7.78391 7.91594 7.93674 8.18220 8.83654 9.43782 10.92649 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.003292 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.652975 B = 8502.507366 C = 9543.288173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.124 4.124 11 C 0.118 3.882 12 N -0.320 5.320 13 C 0.154 3.846 14 C -0.173 4.173 15 N 0.061 4.939 16 O -0.198 6.198 17 O -0.108 6.108 18 C 0.200 3.800 19 C 0.227 3.773 20 N -0.202 5.202 21 N -0.051 5.051 22 N -0.227 5.227 23 H 0.477 0.523 24 N -0.259 5.259 25 N -0.214 5.214 26 H 0.263 0.737 27 H 0.022 0.978 28 H 0.021 0.979 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.542 -16.311 -2.955 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.162 4.162 11 C 0.001 3.999 12 N -0.099 5.099 13 C 0.000 4.000 14 C -0.272 4.272 15 N 0.579 4.421 16 O -0.400 6.400 17 O -0.332 6.332 18 C 0.030 3.970 19 C -0.054 4.054 20 N -0.077 5.077 21 N -0.047 5.047 22 N -0.073 5.073 23 H 0.332 0.668 24 N -0.112 5.112 25 N -0.039 5.039 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 7.361 -14.906 -4.115 17.127 hybrid contribution 0.515 0.545 0.297 0.807 sum 7.876 -14.361 -3.817 16.818 Atomic orbital electron populations 1.69938 1.06070 1.26975 1.50262 1.25000 0.94883 0.99401 0.94945 0.86552 0.79844 0.83146 0.78263 1.20517 1.21078 1.19820 1.21126 0.93108 0.90639 1.51471 0.92533 1.19063 0.93618 0.90746 0.97768 1.22074 1.00060 0.91479 1.02610 1.22789 0.88722 0.83075 1.05340 1.49417 1.23569 1.19087 1.17782 1.22428 0.96100 0.86424 0.95098 1.20760 1.07194 0.96405 1.02875 1.42428 0.99782 1.00304 0.99597 1.94527 1.55359 1.74381 1.15757 1.94719 1.18274 1.51312 1.68900 1.18181 0.93303 0.93147 0.92385 1.21838 0.97548 0.93190 0.92857 1.76767 1.01447 1.13267 1.16231 1.79091 1.16991 1.10872 0.97712 1.47848 1.21921 1.13936 1.23599 0.66834 1.75080 1.01747 1.18741 1.15681 1.78081 0.99820 1.14163 1.11845 0.92759 0.95973 0.96099 0.92276 0.91177 0.87986 0.87056 0.77159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 13.29 55.43 0.74 -24.48 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -13.83 9.11 -34.44 -0.31 -14.15 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.12 -2.15 5.34 -26.73 -0.14 -2.30 16 11 C 0.12 1.49 6.50 -4.04 -0.03 1.46 16 12 N -0.32 -4.09 3.68 -61.40 -0.23 -4.32 16 13 C 0.15 1.71 11.10 -17.26 -0.19 1.52 16 14 C -0.17 -2.38 7.13 -80.09 -0.57 -2.95 16 15 N 0.06 0.91 4.45 33.89 0.15 1.06 16 16 O -0.20 -2.95 19.02 -29.46 -0.56 -3.51 16 17 O -0.11 -1.72 15.39 -29.46 -0.45 -2.17 16 18 C 0.20 2.93 7.18 -82.77 -0.59 2.33 16 19 C 0.23 3.22 8.15 -156.31 -1.27 1.94 16 20 N -0.20 -2.84 8.96 32.16 0.29 -2.55 16 21 N -0.05 -0.57 13.47 60.35 0.81 0.24 16 22 N -0.23 -1.96 7.90 60.35 0.48 -1.49 16 23 H 0.48 1.61 8.96 -340.37 -3.05 -1.44 16 24 N -0.26 -3.17 12.40 32.17 0.40 -2.77 16 25 N -0.21 -3.22 12.45 33.43 0.42 -2.80 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.11 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.21 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 308.65 15.07 4.65 4.65 Total: -1.00 -32.90 308.65 -7.23 -40.12 By element: Atomic # 1 Polarization: -1.95 SS G_CDS: -5.55 Total: -7.50 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -3.35 Total: -10.18 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 3.05 Total: -37.11 kcal Atomic # 8 Polarization: -4.66 SS G_CDS: -1.01 Total: -5.68 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.90 -7.23 -40.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676465.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.752 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 212.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 205.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds