Wall clock time and date at job start Tue Mar 31 2020 06:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00283 * 2 1 4 4 H 1.48495 * 109.47357 * 270.00167 * 3 2 1 5 5 H 1.48498 * 109.46911 * 30.00221 * 3 2 1 6 6 H 1.48504 * 109.46982 * 149.99868 * 3 2 1 7 7 C 1.37882 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00261 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99546 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46921 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47123 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47047 * 179.97438 * 11 10 9 13 13 C 1.35031 * 125.93553 * 125.00224 * 12 11 10 14 14 C 1.35094 * 107.97346 * 179.97438 * 13 12 11 15 15 N 1.48020 * 126.07447 * 179.97438 * 14 13 12 16 16 O 1.21803 * 119.99894 * 0.02562 * 15 14 13 17 17 O 1.21799 * 119.99903 * 179.75030 * 15 14 13 18 18 C 1.40813 * 107.84920 * 0.22227 * 14 13 12 19 19 C 1.48489 * 126.03315 * 179.77343 * 18 14 13 20 20 N 1.34039 * 126.67395 * 359.69178 * 19 18 14 21 21 N 1.28985 * 107.27064 * 179.87044 * 20 19 18 22 22 N 1.28731 * 108.94208 * 0.39651 * 21 20 19 23 23 H 0.96997 * 125.34610 * 179.76741 * 22 21 20 24 24 N 1.28874 * 109.31057 * 359.74638 * 22 21 20 25 25 N 1.31593 * 107.93306 * 359.62232 * 18 14 13 26 26 H 0.97006 * 119.99872 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47302 * 60.00692 * 9 7 2 28 28 H 1.08999 * 109.46968 * 300.00239 * 9 7 2 29 29 H 1.08997 * 109.47582 * 59.99556 * 10 9 7 30 30 H 1.09008 * 109.46992 * 300.00273 * 10 9 7 31 31 H 1.08997 * 109.47194 * 60.00146 * 11 10 9 32 32 H 1.08996 * 109.47580 * 299.99636 * 11 10 9 33 33 H 1.08001 * 126.00883 * 0.03236 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 0.0001 12 7 2.4320 -6.1007 -0.0005 13 6 2.4709 -7.1105 0.8951 14 6 3.4870 -7.9323 0.5528 15 7 3.8873 -9.1667 1.2649 16 8 3.2778 -9.5218 2.2579 17 8 4.8229 -9.8301 0.8549 18 6 4.1014 -7.4029 -0.5983 19 6 5.2655 -7.9847 -1.3132 20 7 5.9299 -9.1017 -0.9850 21 7 6.8674 -9.2597 -1.8567 22 7 6.8194 -8.2903 -2.7023 23 1 7.4186 -8.1731 -3.4561 24 7 5.8501 -7.5004 -2.3906 25 7 3.4596 -6.3031 -0.9306 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8903 28 1 0.6245 -2.5570 0.8897 29 1 2.8718 -3.6044 0.8894 30 1 2.8718 -3.6044 -0.8906 31 1 0.8531 -5.0451 -0.8896 32 1 0.8537 -5.0446 0.8903 33 1 1.8060 -7.2390 1.7364 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592676465.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:14 Heat of formation + Delta-G solvation = 183.542182 kcal Electronic energy + Delta-G solvation = -22266.896990 eV Core-core repulsion = 18563.767507 eV Total energy + Delta-G solvation = -3703.129483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 293.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -45.61084 -43.45924 -42.35717 -37.42754 -36.97922 -35.58569 -35.12149 -34.25401 -32.49546 -32.43836 -29.15353 -27.15740 -26.49922 -25.65844 -24.46042 -22.64522 -22.55696 -21.77746 -20.59588 -19.65685 -19.30604 -18.59937 -18.51921 -18.18970 -17.69990 -16.93945 -16.50655 -16.34248 -15.69131 -15.20533 -14.85247 -14.43291 -14.02742 -13.61262 -13.39887 -13.08443 -12.92235 -12.66413 -12.61510 -12.55362 -12.47543 -12.27599 -12.08404 -12.00262 -11.83657 -11.66742 -11.57124 -11.30043 -10.93786 -10.56672 -10.49405 -8.23471 -6.32419 -0.80439 -0.29985 0.13791 0.19473 0.69024 0.88998 1.35602 1.38938 1.40391 1.50091 1.51689 2.26111 2.39133 2.58877 3.11576 3.19718 3.50982 3.59738 3.92462 3.98545 4.00878 4.23181 4.35205 4.36734 4.72037 4.77435 5.09156 5.25825 5.45590 5.49196 5.53136 5.65864 5.75374 5.81710 6.21683 6.76908 6.83118 7.00220 7.36818 8.87515 Molecular weight = 293.10amu Principal moments of inertia in cm(-1) A = 0.019788 B = 0.003292 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.652975 B = 8502.507366 C = 9543.288173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.029 3.971 10 C -0.110 4.110 11 C 0.128 3.872 12 N -0.322 5.322 13 C 0.184 3.816 14 C -0.191 4.191 15 N 0.063 4.937 16 O -0.189 6.189 17 O -0.141 6.141 18 C 0.196 3.804 19 C 0.209 3.791 20 N -0.226 5.226 21 N -0.049 5.049 22 N -0.193 5.193 23 H 0.497 0.503 24 N -0.266 5.266 25 N -0.245 5.245 26 H 0.264 0.736 27 H 0.005 0.995 28 H 0.013 0.987 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.150 0.850 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.579 -16.449 -2.606 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.070 0.930 9 C -0.009 4.009 10 C -0.148 4.148 11 C 0.011 3.989 12 N -0.101 5.101 13 C 0.030 3.970 14 C -0.291 4.291 15 N 0.578 4.422 16 O -0.395 6.395 17 O -0.358 6.358 18 C 0.025 3.975 19 C -0.073 4.073 20 N -0.101 5.101 21 N -0.045 5.045 22 N -0.045 5.045 23 H 0.358 0.642 24 N -0.121 5.121 25 N -0.069 5.069 26 H 0.073 0.927 27 H 0.024 0.976 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.168 0.832 33 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 7.476 -15.081 -3.817 17.260 hybrid contribution 0.528 0.592 0.148 0.807 sum 8.004 -14.489 -3.670 16.954 Atomic orbital electron populations 1.70031 1.07339 1.27799 1.51419 1.25790 0.95700 1.02764 0.94813 0.85608 0.78753 0.79314 0.78366 1.20080 1.20630 1.19277 1.21620 0.93322 0.92626 1.50796 0.92970 1.18921 0.94031 0.91488 0.96445 1.21714 0.98870 0.92579 1.01622 1.22668 0.87871 0.80548 1.07817 1.49305 1.23314 1.19553 1.17890 1.23087 0.94943 0.84361 0.94639 1.20886 1.08420 0.96529 1.03255 1.42546 0.99559 1.00570 0.99505 1.94497 1.54916 1.74423 1.15691 1.94734 1.19222 1.52274 1.69544 1.18383 0.93351 0.93056 0.92678 1.21948 0.98127 0.93635 0.93576 1.76768 1.02229 1.13777 1.17311 1.79021 1.16472 1.11199 0.97792 1.47883 1.20915 1.12431 1.23286 0.64244 1.75033 1.02394 1.19309 1.15412 1.78046 1.00954 1.14699 1.13191 0.92667 0.97626 0.96821 0.92576 0.92907 0.87093 0.83236 0.72698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.35 13.29 21.45 0.28 -52.06 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.95 42.28 29.54 68.60 2.03 44.31 16 4 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.55 -28.76 9.11 25.60 0.23 -28.52 16 8 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.03 1.29 4.97 29.85 0.15 1.44 16 10 C -0.11 -3.69 5.34 30.59 0.16 -3.53 16 11 C 0.13 2.88 6.50 86.38 0.56 3.45 16 12 N -0.32 -7.48 3.68 -348.18 -1.28 -8.76 16 13 C 0.18 3.52 11.10 83.48 0.93 4.44 16 14 C -0.19 -4.96 7.13 36.28 0.26 -4.70 16 15 N 0.06 1.83 4.45 -46.68 -0.21 1.62 16 16 O -0.19 -5.29 19.02 18.88 0.36 -4.93 16 17 O -0.14 -4.51 15.39 18.89 0.29 -4.22 16 18 C 0.20 5.60 7.18 42.55 0.31 5.91 16 19 C 0.21 5.86 8.15 137.39 1.12 6.98 16 20 N -0.23 -6.36 8.96 -52.17 -0.47 -6.82 16 21 N -0.05 -1.08 13.47 37.02 0.50 -0.58 16 22 N -0.19 -3.14 7.90 37.02 0.29 -2.85 16 23 H 0.50 2.57 8.96 -347.54 -3.12 -0.55 16 24 N -0.27 -6.37 12.40 -52.12 -0.65 -7.02 16 25 N -0.24 -7.10 12.45 -48.14 -0.60 -7.70 16 26 H 0.26 14.15 8.31 -92.70 -0.77 13.38 16 27 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.15 2.29 8.07 -2.39 -0.02 2.27 16 33 H 0.26 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -71.91 308.65 2.80 -69.10 By element: Atomic # 1 Polarization: -4.51 SS G_CDS: -1.93 Total: -6.44 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 4.18 Total: -13.65 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -2.13 Total: -84.18 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.65 Total: -9.15 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -71.91 2.80 -69.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676465.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.646 kcal (2) G-P(sol) polarization free energy of solvation -71.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds