Wall clock time and date at job start Tue Mar 31 2020 06:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47403 * 239.99884 * 2 1 3 5 5 H 1.08001 * 120.00313 * 240.00235 * 4 2 1 6 6 C 1.37876 * 120.00047 * 60.00019 * 4 2 1 7 7 N 1.31514 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46807 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47117 * 119.99506 * 8 6 4 11 11 H 1.48495 * 109.47033 * 239.99986 * 8 6 4 12 12 N 1.46901 * 109.47236 * 119.99556 * 2 1 3 13 13 C 1.46902 * 111.00040 * 176.04530 * 12 2 1 14 14 C 1.46899 * 111.00103 * 300.00352 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 N 1.29599 * 118.87804 * 359.97438 * 15 14 12 17 17 C 1.37014 * 121.67686 * 179.97438 * 16 15 14 18 18 C 1.39908 * 129.15447 * 180.02562 * 17 16 15 19 19 C 1.32760 * 115.82470 * 179.97438 * 18 17 16 20 20 S 1.75592 * 110.53627 * 0.02562 * 19 18 17 21 21 C 1.39098 * 118.18751 * 0.02562 * 17 16 15 22 22 C 1.41543 * 119.10350 * 0.03359 * 21 17 16 23 23 O 1.21958 * 120.63852 * 180.02562 * 22 21 17 24 24 N 1.34885 * 118.72159 * 359.68562 * 22 21 17 25 25 H 0.97003 * 119.97092 * 180.29419 * 24 22 21 26 26 H 1.08998 * 109.47071 * 60.00224 * 1 2 3 27 27 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47377 * 299.99963 * 1 2 3 29 29 H 0.97002 * 120.00302 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 31 31 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 32 32 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 33 33 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 34 34 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 35 35 H 1.07998 * 122.08795 * 359.97438 * 18 17 16 36 36 H 1.07992 * 124.73267 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1466 -2.2870 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 7 2.4542 -2.0264 3.4293 17 6 2.7631 -2.8572 4.4741 18 6 3.3984 -4.1035 4.4537 19 6 3.5671 -4.6861 5.6347 20 16 2.9164 -3.6785 6.9171 21 6 2.4185 -2.4524 5.7595 22 6 1.7667 -1.2087 5.9381 23 8 1.4523 -0.8261 7.0526 24 7 1.5061 -0.4516 4.8526 25 1 1.0641 0.4058 4.9545 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7090 1.1614 -3.4844 30 1 3.8163 -1.3720 2.0501 31 1 3.8069 -1.2915 0.2719 32 1 3.9192 0.2044 1.2301 33 1 2.0518 0.9347 2.5280 34 1 0.4722 0.1325 2.3564 35 1 3.7308 -4.5631 3.5347 36 1 4.0388 -5.6457 5.7857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161814708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:34 Heat of formation + Delta-G solvation = 46.515185 kcal Electronic energy + Delta-G solvation = -21032.225972 eV Core-core repulsion = 17837.155016 eV Total energy + Delta-G solvation = -3195.070956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57460 -38.18490 -37.46983 -36.09171 -33.11307 -32.64483 -30.44070 -29.06204 -27.94207 -25.29850 -24.83142 -23.81556 -22.35121 -21.10591 -19.55578 -19.14123 -18.39454 -16.72691 -16.57424 -16.18155 -15.99168 -15.25913 -14.60300 -14.32939 -14.22343 -13.83858 -13.57614 -13.38880 -12.95905 -12.87811 -12.45468 -12.28398 -11.70374 -11.26769 -11.16759 -11.04272 -10.81756 -10.67920 -10.46655 -10.28272 -10.19614 -10.07378 -9.95705 -9.48673 -9.13837 -8.93727 -8.47118 -7.92211 -7.27670 -6.06036 -4.09630 0.14267 1.23403 1.42514 1.76667 2.26588 2.71607 3.28159 3.36525 3.41083 3.55387 3.80986 4.30680 4.41427 4.64468 4.85984 5.01317 5.13450 5.27476 5.56621 5.62515 5.71909 5.80290 5.89388 6.28041 6.30551 6.41571 6.47456 6.71634 6.90088 6.94738 7.08690 7.40510 7.59707 7.69613 7.78698 7.91796 8.11623 8.24329 8.49828 8.97070 9.55571 11.01158 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026976 B = 0.003870 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.699448 B = 7232.914564 C = 8039.352962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.210 3.790 3 H 0.001 0.999 4 C -0.500 4.500 5 H 0.067 0.933 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.512 5.512 13 C 0.033 3.967 14 C 0.090 3.910 15 C 0.406 3.594 16 N -0.467 5.467 17 C 0.178 3.822 18 C -0.122 4.122 19 C -0.177 4.177 20 S 0.191 5.809 21 C -0.346 4.346 22 C 0.575 3.425 23 O -0.540 6.540 24 N -0.638 5.638 25 H 0.421 0.579 26 H 0.087 0.913 27 H 0.037 0.963 28 H 0.006 0.994 29 H 0.260 0.740 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.003 0.997 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.157 0.843 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -6.164 14.667 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.538 4.538 5 H 0.085 0.915 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.237 5.237 13 C -0.116 4.116 14 C -0.041 4.041 15 C 0.135 3.865 16 N -0.189 5.189 17 C 0.052 3.948 18 C -0.153 4.153 19 C -0.314 4.314 20 S 0.455 5.545 21 C -0.468 4.468 22 C 0.369 3.631 23 O -0.419 6.419 24 N -0.282 5.282 25 H 0.261 0.739 26 H 0.106 0.894 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.021 0.979 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.175 0.825 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.528 -7.058 16.118 17.946 hybrid contribution 0.256 1.138 -1.660 2.028 sum 3.783 -5.921 14.459 16.075 Atomic orbital electron populations 1.21902 0.97710 0.99929 0.99872 1.19341 0.92323 0.92118 0.85709 0.98146 1.21155 1.30943 1.12327 0.89408 0.91494 1.24918 0.95194 0.95068 0.99050 1.69887 1.37027 1.23075 1.23392 0.86455 0.78600 0.79638 0.82818 1.19660 1.21061 1.21202 1.61953 1.10591 1.51202 0.99907 1.22424 0.87471 0.98490 1.03190 1.21248 1.02937 0.92398 0.87488 1.23477 0.86787 0.90834 0.85361 1.68851 1.18309 1.02984 1.28714 1.19371 0.93869 0.94120 0.87428 1.19582 1.02258 0.93695 0.99718 1.25772 1.05091 1.04467 0.96117 1.83990 1.55276 1.08476 1.06730 1.24525 1.18748 1.03864 0.99660 1.15781 0.79459 0.83809 0.84042 1.90962 1.54741 1.73598 1.22577 1.44432 1.53706 1.22849 1.07202 0.73949 0.89396 0.94357 0.97502 0.93019 0.91458 0.90328 0.97878 0.92180 0.87065 0.82516 0.80397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.76 37.16 0.33 -2.72 16 2 C 0.21 4.90 2.06 -68.87 -0.14 4.76 16 3 H 0.00 0.02 8.14 -51.92 -0.42 -0.40 16 4 C -0.50 -12.97 7.88 -34.44 -0.27 -13.24 16 5 H 0.07 1.75 6.41 -52.49 -0.34 1.42 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.89 -24.40 11.32 55.43 0.63 -23.77 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.51 -10.09 4.30 -237.73 -1.02 -11.11 16 13 C 0.03 0.61 8.89 60.07 0.53 1.15 16 14 C 0.09 1.40 5.22 -4.98 -0.03 1.37 16 15 C 0.41 6.00 7.37 -155.40 -1.15 4.85 16 16 N -0.47 -7.55 7.25 -8.40 -0.06 -7.62 16 17 C 0.18 2.62 7.01 -84.61 -0.59 2.02 16 18 C -0.12 -1.43 10.15 -40.83 -0.41 -1.85 16 19 C -0.18 -1.65 11.13 28.86 0.32 -1.33 16 20 S 0.19 2.17 23.30 -107.50 -2.50 -0.34 16 21 C -0.35 -5.09 6.48 -38.00 -0.25 -5.34 16 22 C 0.57 8.92 7.76 -14.95 -0.12 8.81 16 23 O -0.54 -9.56 17.97 4.96 0.09 -9.47 16 24 N -0.64 -8.41 5.28 -12.13 -0.06 -8.48 16 25 H 0.42 4.30 8.78 -40.82 -0.36 3.94 16 26 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.01 0.12 6.20 -51.93 -0.32 -0.20 16 29 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 30 H 0.07 1.18 5.66 -51.93 -0.29 0.88 16 31 H 0.08 1.61 6.10 -51.93 -0.32 1.29 16 32 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 34 H 0.11 1.62 5.83 -51.93 -0.30 1.32 16 35 H 0.16 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.18 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 310.31 15.07 4.68 4.68 Total: -1.00 -30.72 310.31 -9.06 -39.78 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -3.92 Total: 0.76 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -1.87 Total: -0.06 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.52 Total: -50.97 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -2.50 Total: -0.34 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.72 -9.06 -39.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161814708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.295 kcal (2) G-P(sol) polarization free energy of solvation -30.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds