Wall clock time and date at job start Tue Mar 31 2020 06:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47139 * 2 1 4 4 C 1.50695 * 109.47403 * 239.99884 * 2 1 3 5 5 H 1.08001 * 120.00313 * 240.00235 * 4 2 1 6 6 C 1.37876 * 120.00047 * 60.00019 * 4 2 1 7 7 N 1.31514 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00206 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46807 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47117 * 119.99506 * 8 6 4 11 11 H 1.48495 * 109.47033 * 239.99986 * 8 6 4 12 12 N 1.46901 * 109.47236 * 119.99556 * 2 1 3 13 13 C 1.46902 * 111.00040 * 176.04530 * 12 2 1 14 14 C 1.46899 * 111.00103 * 300.00352 * 12 2 1 15 15 C 1.50703 * 109.47107 * 169.99758 * 14 12 2 16 16 N 1.29599 * 118.87804 * 359.97438 * 15 14 12 17 17 C 1.37014 * 121.67686 * 179.97438 * 16 15 14 18 18 C 1.39908 * 129.15447 * 180.02562 * 17 16 15 19 19 C 1.32760 * 115.82470 * 179.97438 * 18 17 16 20 20 S 1.75592 * 110.53627 * 0.02562 * 19 18 17 21 21 C 1.39098 * 118.18751 * 0.02562 * 17 16 15 22 22 C 1.41543 * 119.10350 * 0.03359 * 21 17 16 23 23 O 1.21958 * 120.63852 * 180.02562 * 22 21 17 24 24 N 1.34885 * 118.72159 * 359.68562 * 22 21 17 25 25 H 0.97003 * 119.97092 * 180.29419 * 24 22 21 26 26 H 1.08998 * 109.47071 * 60.00224 * 1 2 3 27 27 H 1.08997 * 109.47058 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47377 * 299.99963 * 1 2 3 29 29 H 0.97002 * 120.00302 * 180.02562 * 7 6 4 30 30 H 1.09005 * 109.46528 * 183.95480 * 13 12 2 31 31 H 1.09000 * 109.46785 * 303.95569 * 13 12 2 32 32 H 1.08997 * 109.47044 * 63.96124 * 13 12 2 33 33 H 1.09002 * 109.47043 * 289.99738 * 14 12 2 34 34 H 1.09001 * 109.47354 * 49.99799 * 14 12 2 35 35 H 1.07998 * 122.08795 * 359.97438 * 18 17 16 36 36 H 1.07992 * 124.73267 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1466 -2.2870 -3.6036 10 1 1.1662 -1.5868 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 7 2.4542 -2.0264 3.4293 17 6 2.7631 -2.8572 4.4741 18 6 3.3984 -4.1035 4.4537 19 6 3.5671 -4.6861 5.6347 20 16 2.9164 -3.6785 6.9171 21 6 2.4185 -2.4524 5.7595 22 6 1.7667 -1.2087 5.9381 23 8 1.4523 -0.8261 7.0526 24 7 1.5061 -0.4516 4.8526 25 1 1.0641 0.4058 4.9545 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 0.7090 1.1614 -3.4844 30 1 3.8163 -1.3720 2.0501 31 1 3.8069 -1.2915 0.2719 32 1 3.9192 0.2044 1.2301 33 1 2.0518 0.9347 2.5280 34 1 0.4722 0.1325 2.3564 35 1 3.7308 -4.5631 3.5347 36 1 4.0388 -5.6457 5.7857 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161814708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:33 Heat of formation + Delta-G solvation = 26.035785 kcal Electronic energy + Delta-G solvation = -21033.114026 eV Core-core repulsion = 17837.155016 eV Total energy + Delta-G solvation = -3195.959010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 293.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.69462 -39.44750 -38.73426 -37.36831 -34.80712 -33.90884 -31.76245 -30.68768 -29.27651 -26.97081 -26.05961 -25.27731 -23.69122 -22.15280 -21.15231 -20.25430 -19.50833 -18.35875 -17.73784 -17.40017 -17.26002 -16.86389 -15.93769 -15.82354 -15.46756 -15.10739 -14.87806 -14.69824 -14.29468 -14.08485 -13.80669 -13.67274 -13.23728 -12.90511 -12.74260 -12.54887 -12.39230 -12.12890 -12.04379 -11.91117 -11.82339 -11.59614 -11.17260 -10.86996 -10.67237 -10.45840 -10.09387 -8.93845 -8.86820 -8.06464 -6.15580 -0.86806 0.31712 0.35889 0.87708 1.23737 1.44793 1.48075 1.57705 1.61294 2.45043 2.47496 2.72607 3.19405 3.24909 3.51219 3.66705 3.92926 4.25611 4.32510 4.46223 4.71960 4.80992 4.82270 4.87498 5.01391 5.03163 5.09202 5.19976 5.23656 5.37979 5.50715 5.57590 5.79471 5.85014 6.32874 6.43618 6.57463 6.66545 6.86311 6.98688 7.53064 8.99571 Molecular weight = 293.09amu Principal moments of inertia in cm(-1) A = 0.026976 B = 0.003870 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.699448 B = 7232.914564 C = 8039.352962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.216 3.784 3 H -0.025 1.025 4 C -0.512 4.512 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.953 3.047 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.521 5.521 13 C 0.042 3.958 14 C 0.093 3.907 15 C 0.408 3.592 16 N -0.492 5.492 17 C 0.166 3.834 18 C -0.146 4.146 19 C -0.139 4.139 20 S 0.210 5.790 21 C -0.379 4.379 22 C 0.570 3.430 23 O -0.570 6.570 24 N -0.624 5.624 25 H 0.434 0.566 26 H 0.060 0.940 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.260 0.740 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.003 0.997 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.168 0.832 36 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.389 -7.629 15.631 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.109 3.891 3 H -0.007 1.007 4 C -0.551 4.551 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.245 5.245 13 C -0.107 4.107 14 C -0.038 4.038 15 C 0.137 3.863 16 N -0.214 5.214 17 C 0.040 3.960 18 C -0.176 4.176 19 C -0.277 4.277 20 S 0.475 5.525 21 C -0.500 4.500 22 C 0.365 3.635 23 O -0.452 6.452 24 N -0.269 5.269 25 H 0.275 0.725 26 H 0.079 0.921 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.022 0.978 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.186 0.814 36 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 4.218 -8.521 17.087 19.554 hybrid contribution 0.086 1.517 -1.864 2.405 sum 4.304 -7.003 15.223 17.300 Atomic orbital electron populations 1.21715 0.97051 0.99392 1.00214 1.19116 0.92762 0.90601 0.86599 1.00722 1.21439 1.30694 1.12127 0.90820 0.92307 1.25597 0.95508 0.95760 1.01584 1.69999 1.37941 1.24146 1.23840 0.85570 0.78039 0.78681 0.79710 1.19304 1.20926 1.20953 1.61788 1.10983 1.51489 1.00273 1.22324 0.87154 0.98477 1.02711 1.21258 1.03651 0.92980 0.85889 1.23135 0.87122 0.90651 0.85367 1.68729 1.18850 1.03652 1.30141 1.19724 0.94318 0.94969 0.87011 1.19761 1.03480 0.93184 1.01185 1.26287 1.02173 1.04933 0.94286 1.83948 1.54527 1.07473 1.06590 1.24738 1.19782 1.04559 1.00971 1.15979 0.79308 0.84279 0.83885 1.90937 1.56311 1.74400 1.23527 1.44202 1.53186 1.23181 1.06284 0.72457 0.92108 0.95152 0.94127 0.93073 0.89927 0.92487 0.97807 0.90292 0.86005 0.81428 0.76014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.76 71.98 0.63 -4.97 16 2 C 0.22 10.08 2.06 44.17 0.09 10.18 16 3 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 4 C -0.51 -26.85 7.88 25.60 0.20 -26.64 16 5 H 0.06 3.12 6.41 -2.91 -0.02 3.10 16 6 C 0.01 0.75 5.30 84.65 0.45 1.19 16 7 N -0.92 -50.69 11.32 21.45 0.24 -50.45 16 8 Si 0.95 42.53 29.54 68.60 2.03 44.56 16 9 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 N -0.52 -20.28 4.30 -906.03 -3.89 -24.17 16 13 C 0.04 1.56 8.89 127.69 1.14 2.69 16 14 C 0.09 2.75 5.22 85.56 0.45 3.19 16 15 C 0.41 11.63 7.37 138.12 1.02 12.65 16 16 N -0.49 -15.43 7.25 -180.48 -1.31 -16.74 16 17 C 0.17 4.67 7.01 38.94 0.27 4.94 16 18 C -0.15 -3.10 10.15 21.50 0.22 -2.88 16 19 C -0.14 -2.10 11.13 66.64 0.74 -1.36 16 20 S 0.21 4.30 23.30 -56.49 -1.32 2.98 16 21 C -0.38 -10.72 6.48 23.29 0.15 -10.57 16 22 C 0.57 17.34 7.76 85.04 0.66 18.00 16 23 O -0.57 -20.02 17.97 -5.18 -0.09 -20.11 16 24 N -0.62 -15.89 5.28 -310.35 -1.64 -17.53 16 25 H 0.43 8.39 8.78 -92.71 -0.81 7.57 16 26 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 27 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.48 6.20 -2.39 -0.01 1.47 16 29 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 30 H 0.08 2.83 5.66 -2.38 -0.01 2.82 16 31 H 0.06 2.35 6.10 -2.39 -0.01 2.34 16 32 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 34 H 0.12 3.33 5.83 -2.39 -0.01 3.31 16 35 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.22 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -66.74 310.31 0.36 -66.39 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.32 Total: 8.65 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 6.02 Total: 6.43 kcal Atomic # 7 Polarization: -102.30 SS G_CDS: -6.60 Total: -108.89 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.09 Total: -20.11 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.32 Total: 2.98 kcal Total: -66.74 0.36 -66.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161814708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.421 kcal (2) G-P(sol) polarization free energy of solvation -66.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds