Wall clock time and date at job start Tue Mar 31 2020 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38286 * 119.94367 * 2 1 4 4 C 1.38115 * 120.05498 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.02775 * 179.97438 * 4 3 2 6 6 C 1.38755 * 119.94348 * 0.02562 * 4 3 2 7 7 O 1.35924 * 120.05213 * 180.02562 * 6 4 3 8 8 C 1.34266 * 117.00321 * 89.99894 * 7 6 4 9 9 O 1.20833 * 119.99764 * 0.02562 * 8 7 6 10 10 C 1.50701 * 120.00193 * 179.71871 * 8 7 6 11 11 C 1.52996 * 109.46972 * 180.27366 * 10 8 7 12 12 C 1.50696 * 109.47298 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99965 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00616 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99508 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00323 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47213 * 60.00237 * 16 14 12 18 18 H 1.48502 * 109.47317 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47320 * 300.00376 * 16 14 12 20 20 C 1.38702 * 119.89011 * 0.27525 * 6 4 3 21 21 N 1.48017 * 120.02638 * 179.70758 * 20 6 4 22 22 O 1.21804 * 119.99564 * 179.97438 * 21 20 6 23 23 O 1.21793 * 120.00251 * 359.97438 * 21 20 6 24 24 C 1.38165 * 119.94258 * 359.42592 * 20 6 4 25 25 H 1.09001 * 109.47435 * 90.00354 * 1 2 3 26 26 H 1.09003 * 109.47004 * 210.00126 * 1 2 3 27 27 H 1.09003 * 109.47360 * 329.99527 * 1 2 3 28 28 H 1.08004 * 119.96960 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47487 * 270.02459 * 5 4 3 30 30 H 1.08998 * 109.46773 * 30.02616 * 5 4 3 31 31 H 1.09007 * 109.46979 * 150.02241 * 5 4 3 32 32 H 1.08994 * 109.47178 * 300.27790 * 10 8 7 33 33 H 1.09006 * 109.46629 * 60.27986 * 10 8 7 34 34 H 1.09000 * 109.47764 * 300.00587 * 11 10 8 35 35 H 1.09006 * 109.46938 * 60.00809 * 11 10 8 36 36 H 0.96999 * 119.99800 * 180.02562 * 15 14 12 37 37 H 1.08002 * 119.97460 * 180.32395 * 24 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1983 0.0000 4 6 3.5784 1.2010 0.0005 5 6 4.3300 2.5072 0.0000 6 6 4.2733 0.0000 0.0005 7 8 5.6326 0.0000 0.0016 8 6 6.2413 -0.0005 1.1983 9 8 5.5824 -0.0014 2.2112 10 6 7.7461 -0.0068 1.2784 11 6 8.1788 -0.0130 2.7459 12 6 9.6836 -0.0187 2.8260 13 1 10.2725 -0.0176 1.9207 14 6 10.3087 -0.0253 4.0549 15 7 9.5915 -0.0271 5.1573 16 14 12.1740 -0.0317 4.1541 17 1 12.7094 1.1816 3.4859 18 1 12.5940 -0.0390 5.5785 19 1 12.7016 -1.2433 3.4767 20 6 3.5787 -1.2005 -0.0058 21 7 4.3170 -2.4834 -0.0123 22 8 3.7064 -3.5374 -0.0174 23 8 5.5349 -2.4852 -0.0127 24 6 2.1970 -1.1979 -0.0001 25 1 -0.3634 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5139 28 1 1.6558 2.1328 0.0004 29 1 4.5113 2.8217 -1.0278 30 1 3.7398 3.2661 0.5135 31 1 5.2827 2.3784 0.5139 32 1 8.1326 -0.8968 0.7819 33 1 8.1398 0.8832 0.7872 34 1 7.7922 0.8771 3.2424 35 1 7.7851 -0.9029 3.2370 36 1 10.0312 -0.0314 6.0219 37 1 1.6556 -2.1324 0.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291176310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:31 Heat of formation + Delta-G solvation = -70.908419 kcal Electronic energy + Delta-G solvation = -23458.821114 eV Core-core repulsion = 19783.612666 eV Total energy + Delta-G solvation = -3675.208448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.33554 -41.11768 -39.38934 -36.96097 -36.33740 -33.77167 -33.62909 -32.87585 -31.18212 -28.02296 -27.50601 -26.76109 -25.77477 -22.99712 -22.28744 -21.27056 -20.19575 -18.82262 -18.63365 -18.01324 -17.52960 -17.02095 -16.96866 -15.85975 -15.16328 -15.07736 -14.47709 -14.45926 -14.24054 -13.62134 -13.29714 -13.23084 -12.86123 -12.67261 -12.44415 -12.29585 -12.15805 -11.87937 -11.48305 -11.37408 -11.30893 -11.01170 -10.94360 -10.79717 -10.68021 -10.24427 -10.08605 -9.73798 -9.66761 -9.23072 -9.02386 -8.38288 -6.02211 -4.07350 -0.29317 0.49407 1.26298 1.36305 2.50795 2.61233 3.14575 3.33832 3.38383 3.40693 3.95496 4.11601 4.36803 4.45786 4.49273 4.54288 4.82206 4.98594 5.10710 5.15618 5.27588 5.32334 5.33444 5.42688 5.55477 5.68767 5.73211 5.81068 6.00355 6.07103 6.16058 6.35848 6.54259 6.74973 7.62685 7.69009 7.70886 7.95384 8.06909 8.32031 8.98851 9.56795 11.08826 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.023424 B = 0.003850 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.081067 B = 7270.125160 C = 7874.445554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.086 4.086 3 C -0.060 4.060 4 C -0.086 4.086 5 C -0.114 4.114 6 C 0.157 3.843 7 O -0.292 6.292 8 C 0.468 3.532 9 O -0.490 6.490 10 C -0.098 4.098 11 C 0.034 3.966 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.046 4.046 21 N 0.030 4.970 22 O -0.166 6.166 23 O -0.136 6.136 24 C -0.055 4.055 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.148 0.852 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.025 0.975 35 H 0.027 0.973 36 H 0.263 0.737 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.553 4.112 -13.513 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.087 4.087 3 C -0.078 4.078 4 C -0.087 4.087 5 C -0.170 4.170 6 C 0.113 3.887 7 O -0.209 6.209 8 C 0.314 3.686 9 O -0.373 6.373 10 C -0.135 4.135 11 C -0.003 4.003 12 C -0.567 4.567 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.130 4.130 21 N 0.551 4.449 22 O -0.379 6.379 23 O -0.356 6.356 24 C -0.073 4.073 25 H 0.098 0.902 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.166 0.834 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -19.125 4.711 -12.956 23.576 hybrid contribution 1.086 -0.482 0.180 1.202 sum -18.039 4.230 -12.776 22.506 Atomic orbital electron populations 1.20824 0.88948 1.03941 1.03193 1.19915 0.97349 0.91431 0.99976 1.21267 0.92522 0.98806 0.95210 1.20160 0.94123 0.94622 0.99793 1.20789 1.00639 0.92096 1.03490 1.18125 0.83672 0.90396 0.96529 1.84819 1.14995 1.84794 1.36245 1.25454 0.93305 0.70697 0.79181 1.90681 1.66766 1.44479 1.35350 1.21904 0.81665 1.04781 1.05146 1.19050 0.96157 0.98936 0.86155 1.21080 0.90925 1.52073 0.92597 0.92161 1.25015 0.98528 0.95020 0.95696 1.69982 1.35487 1.49753 0.97582 0.86577 0.85256 0.78706 0.76988 1.20151 1.21274 1.20036 1.21433 0.92999 0.83272 1.15277 1.43358 1.01428 1.02238 0.97907 1.94498 1.69999 1.19499 1.53923 1.94624 0.94785 1.94132 1.52099 1.20826 0.90170 1.00612 0.95739 0.90244 0.90634 0.90527 0.83414 0.89668 0.90173 0.90701 0.87687 0.88523 0.95654 0.95436 0.92763 0.82495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.01 36.01 0.36 -0.22 16 2 C -0.09 -0.76 5.88 -104.60 -0.62 -1.38 16 3 C -0.06 -0.54 9.35 -39.61 -0.37 -0.91 16 4 C -0.09 -1.04 5.89 -104.47 -0.62 -1.66 16 5 C -0.11 -1.16 9.79 36.01 0.35 -0.81 16 6 C 0.16 2.47 4.87 -39.22 -0.19 2.28 16 7 O -0.29 -5.16 7.76 -30.98 -0.24 -5.40 16 8 C 0.47 9.52 6.02 36.01 0.22 9.74 16 9 O -0.49 -11.39 15.72 -18.75 -0.29 -11.69 16 10 C -0.10 -2.02 5.75 -27.88 -0.16 -2.18 16 11 C 0.03 0.90 4.26 -27.89 -0.12 0.78 16 12 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 16 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.05 -0.72 6.87 -79.80 -0.55 -1.27 16 21 N 0.03 0.55 4.45 34.03 0.15 0.70 16 22 O -0.17 -2.89 18.45 -29.46 -0.54 -3.43 16 23 O -0.14 -2.73 16.43 -36.49 -0.60 -3.33 16 24 C -0.05 -0.63 9.20 -39.61 -0.36 -0.99 16 25 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 27 H 0.08 0.30 8.08 -51.93 -0.42 -0.12 16 28 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.07 0.95 6.84 -51.93 -0.36 0.59 16 32 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 33 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.03 0.80 8.10 -51.93 -0.42 0.38 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 37 H 0.16 1.51 7.61 -52.49 -0.40 1.12 16 LS Contribution 331.00 15.07 4.99 4.99 Total: -1.00 -34.52 331.00 -7.80 -42.32 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: -4.51 Total: -4.23 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -2.46 Total: -10.09 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.89 Total: -25.62 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -1.68 Total: -23.84 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.52 -7.80 -42.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291176310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.585 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds