Wall clock time and date at job start Tue Mar 31 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47183 * 2 1 4 4 H 1.08993 * 109.47539 * 54.73631 * 3 2 1 5 5 C 1.53000 * 109.47230 * 174.74161 * 3 2 1 6 6 N 1.46505 * 109.46993 * 294.30015 * 5 3 2 7 7 C 1.34771 * 120.00254 * 176.31315 * 6 5 3 8 8 O 1.21283 * 120.00034 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00191 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.47205 * 179.97438 * 9 7 6 11 11 C 1.76202 * 99.99577 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00682 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99482 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00197 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99749 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47428 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46997 * 120.00058 * 15 13 11 18 18 H 1.48498 * 109.47028 * 239.99761 * 15 13 11 19 19 C 1.50706 * 109.47103 * 294.73693 * 3 2 1 20 20 C 1.38230 * 120.00208 * 299.72801 * 19 3 2 21 21 C 1.38230 * 120.00163 * 179.78794 * 20 19 3 22 22 C 1.38239 * 119.99888 * 0.44175 * 21 20 19 23 23 C 1.38228 * 119.99882 * 359.80851 * 22 21 20 24 24 C 1.38231 * 120.00046 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47323 * 185.42641 * 1 2 3 26 26 H 1.09008 * 109.46945 * 65.42615 * 1 2 3 27 27 H 1.09001 * 109.46909 * 305.42806 * 1 2 3 28 28 H 1.08998 * 109.47181 * 119.99838 * 2 1 3 29 29 H 1.09002 * 109.46916 * 239.99791 * 2 1 3 30 30 H 1.09001 * 109.47559 * 54.29480 * 5 3 2 31 31 H 1.09000 * 109.47502 * 174.30349 * 5 3 2 32 32 H 0.97005 * 119.99789 * 356.30872 * 6 5 3 33 33 H 1.09000 * 109.46952 * 299.99900 * 9 7 6 34 34 H 1.08997 * 109.47152 * 59.99528 * 9 7 6 35 35 H 0.97007 * 120.00458 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99964 * 359.97438 * 20 19 3 37 37 H 1.08005 * 120.00405 * 180.27628 * 21 20 19 38 38 H 1.08004 * 120.00031 * 179.83712 * 22 21 20 39 39 H 1.08006 * 120.00100 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00131 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9828 0.8390 5 6 3.5643 1.4445 0.1322 6 7 3.9413 0.9155 1.4454 7 6 5.2420 0.7531 1.7584 8 8 6.1006 1.0446 0.9529 9 6 5.6297 0.2084 3.1089 10 16 7.4333 0.1084 3.2241 11 6 7.6003 -0.5392 4.8543 12 1 6.7209 -0.7462 5.4459 13 6 8.8623 -0.7843 5.3776 14 7 9.9342 -0.5334 4.6561 15 14 9.0394 -1.4701 7.1062 16 1 7.6932 -1.6626 7.7027 17 1 9.7480 -2.7740 7.0511 18 1 9.8179 -0.5185 7.9389 19 6 1.6469 2.1143 -1.2905 20 6 2.0921 1.6076 -2.4971 21 6 1.7280 2.2212 -3.6810 22 6 0.9260 3.3470 -3.6578 23 6 0.4850 3.8567 -2.4510 24 6 0.8455 3.2404 -1.2673 25 1 -0.3634 -1.0230 0.0972 26 1 -0.3633 0.4274 -0.9347 27 1 -0.3633 0.5957 0.8374 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.9977 0.8200 -0.6490 31 1 3.9365 2.4640 0.0308 32 1 3.2546 0.6821 2.0895 33 1 5.2515 0.8688 3.8893 34 1 5.2022 -0.7861 3.2360 35 1 10.8162 -0.7043 5.0220 36 1 2.7221 0.7305 -2.5150 37 1 2.0722 1.8228 -4.6240 38 1 0.6436 3.8280 -4.5827 39 1 -0.1412 4.7365 -2.4328 40 1 0.5013 3.6389 -0.3244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031546001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:21 Heat of formation + Delta-G solvation = -33.522901 kcal Electronic energy + Delta-G solvation = -20083.267965 eV Core-core repulsion = 16988.266641 eV Total energy + Delta-G solvation = -3095.001325 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06307 -38.96468 -36.45345 -33.54588 -32.42107 -31.17129 -31.07272 -29.81993 -27.64659 -25.48257 -23.78233 -23.21138 -22.56102 -20.36237 -20.15097 -17.86328 -17.15459 -16.25122 -16.08968 -15.54916 -15.31153 -14.96397 -14.79899 -14.54819 -14.09868 -13.81178 -13.71870 -13.52681 -13.10799 -13.01310 -12.79148 -12.52659 -12.29034 -11.83769 -11.67894 -11.41983 -11.17788 -11.06620 -11.01126 -10.91355 -10.86005 -10.74266 -9.79856 -9.40373 -9.14699 -9.07104 -8.93029 -8.83983 -8.21825 -6.48917 -6.21043 -3.91355 1.11149 1.17512 3.05438 3.12897 3.22011 3.28834 3.33575 3.54565 3.75174 4.21041 4.38211 4.45578 4.75198 4.76219 4.78403 4.89642 4.97325 5.14136 5.14510 5.20938 5.24719 5.31345 5.40238 5.45240 5.64171 5.69150 5.74125 5.80731 5.82830 5.86643 5.92021 5.98180 6.03697 6.15298 6.24038 6.29135 6.41252 6.63534 6.77008 7.60592 7.73021 8.36178 8.64180 9.24382 10.86439 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034809 B = 0.002603 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.203258 B =10756.219791 C =11180.366896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.060 4.060 4 H 0.085 0.915 5 C 0.130 3.870 6 N -0.738 5.738 7 C 0.531 3.469 8 O -0.518 6.518 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.068 4.068 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.114 4.114 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.397 0.603 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.268 0.732 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.617 4.874 -12.520 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.079 4.079 4 H 0.103 0.897 5 C 0.006 3.994 6 N -0.393 5.393 7 C 0.317 3.683 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.165 5.835 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.137 4.137 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.069 4.069 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.133 4.133 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.231 0.769 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.974 5.361 -13.885 25.719 hybrid contribution -1.204 -0.819 2.288 2.712 sum -22.178 4.542 -11.596 25.435 Atomic orbital electron populations 1.21768 0.95543 1.01571 1.01895 1.21632 0.96127 0.94906 1.02880 1.20479 0.95146 0.96781 0.95504 0.89688 1.21301 0.92754 0.99722 0.85658 1.46013 1.07723 1.68456 1.17117 1.20303 0.81718 0.77297 0.88984 1.90706 1.49083 1.48779 1.50600 1.23528 1.07484 1.03414 0.95939 1.85412 0.92684 1.84665 1.20694 1.22907 0.95287 1.49623 1.00437 0.90886 1.24999 0.94823 0.95233 0.98600 1.70029 0.98038 1.45483 1.36744 0.86114 0.78302 0.78607 0.82450 1.19627 1.20571 1.20575 1.19642 0.97418 0.95505 0.94286 1.21063 0.99735 1.00208 0.91966 1.21156 0.98178 0.96095 0.98150 1.21148 0.98526 0.96744 0.97937 1.21123 1.00211 0.99897 0.92573 1.21065 0.98400 0.95492 0.98297 0.92740 0.92661 0.92750 0.91198 0.91434 0.91254 0.91629 0.76862 0.89250 0.89245 0.92244 0.85908 0.86089 0.86293 0.86200 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.64 37.16 0.36 -0.74 16 2 C -0.12 -0.96 5.24 -26.73 -0.14 -1.10 16 3 C -0.06 -0.53 2.05 -91.77 -0.19 -0.72 16 4 H 0.08 0.67 7.88 -51.93 -0.41 0.26 16 5 C 0.13 1.55 4.78 -4.04 -0.02 1.53 16 6 N -0.74 -9.81 5.18 -60.29 -0.31 -10.12 16 7 C 0.53 9.97 7.85 -10.99 -0.09 9.89 16 8 O -0.52 -11.93 15.86 5.55 0.09 -11.85 16 9 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.53 -15.27 9.50 30.94 0.29 -14.97 16 12 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 15 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 C -0.07 -0.62 3.87 -104.62 -0.41 -1.02 16 20 C -0.11 -1.03 8.71 -39.59 -0.34 -1.38 16 21 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 22 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 23 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 24 C -0.11 -0.97 9.67 -39.58 -0.38 -1.35 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.43 7.57 -51.92 -0.39 0.04 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.57 7.20 -51.93 -0.37 0.20 16 29 H 0.07 0.57 7.24 -51.93 -0.38 0.20 16 30 H 0.07 0.90 7.58 -51.93 -0.39 0.51 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.40 4.08 7.83 -40.82 -0.32 3.76 16 33 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 34 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.12 1.07 7.15 -52.48 -0.38 0.70 16 37 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 38 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 39 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.12 0.85 7.95 -52.49 -0.42 0.43 16 LS Contribution 350.19 15.07 5.28 5.28 Total: -1.00 -34.32 350.19 -9.41 -43.73 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.98 Total: 0.84 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.98 Total: -14.90 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.42 Total: -35.66 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.32 -9.41 -43.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031546001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.212 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds