Wall clock time and date at job start Tue Mar 31 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47183 * 2 1 4 4 H 1.08993 * 109.47539 * 54.73631 * 3 2 1 5 5 C 1.53000 * 109.47230 * 174.74161 * 3 2 1 6 6 N 1.46505 * 109.46993 * 294.30015 * 5 3 2 7 7 C 1.34771 * 120.00254 * 176.31315 * 6 5 3 8 8 O 1.21283 * 120.00034 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00191 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.47205 * 179.97438 * 9 7 6 11 11 C 1.76202 * 99.99577 * 179.97438 * 10 9 7 12 12 H 1.07994 * 120.00682 * 0.02562 * 11 10 9 13 13 C 1.38800 * 119.99482 * 179.97438 * 11 10 9 14 14 N 1.31626 * 120.00197 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99749 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47428 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46997 * 120.00058 * 15 13 11 18 18 H 1.48498 * 109.47028 * 239.99761 * 15 13 11 19 19 C 1.50706 * 109.47103 * 294.73693 * 3 2 1 20 20 C 1.38230 * 120.00208 * 299.72801 * 19 3 2 21 21 C 1.38230 * 120.00163 * 179.78794 * 20 19 3 22 22 C 1.38239 * 119.99888 * 0.44175 * 21 20 19 23 23 C 1.38228 * 119.99882 * 359.80851 * 22 21 20 24 24 C 1.38231 * 120.00046 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47323 * 185.42641 * 1 2 3 26 26 H 1.09008 * 109.46945 * 65.42615 * 1 2 3 27 27 H 1.09001 * 109.46909 * 305.42806 * 1 2 3 28 28 H 1.08998 * 109.47181 * 119.99838 * 2 1 3 29 29 H 1.09002 * 109.46916 * 239.99791 * 2 1 3 30 30 H 1.09001 * 109.47559 * 54.29480 * 5 3 2 31 31 H 1.09000 * 109.47502 * 174.30349 * 5 3 2 32 32 H 0.97005 * 119.99789 * 356.30872 * 6 5 3 33 33 H 1.09000 * 109.46952 * 299.99900 * 9 7 6 34 34 H 1.08997 * 109.47152 * 59.99528 * 9 7 6 35 35 H 0.97007 * 120.00458 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99964 * 359.97438 * 20 19 3 37 37 H 1.08005 * 120.00405 * 180.27628 * 21 20 19 38 38 H 1.08004 * 120.00031 * 179.83712 * 22 21 20 39 39 H 1.08006 * 120.00100 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00131 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9828 0.8390 5 6 3.5643 1.4445 0.1322 6 7 3.9413 0.9155 1.4454 7 6 5.2420 0.7531 1.7584 8 8 6.1006 1.0446 0.9529 9 6 5.6297 0.2084 3.1089 10 16 7.4333 0.1084 3.2241 11 6 7.6003 -0.5392 4.8543 12 1 6.7209 -0.7462 5.4459 13 6 8.8623 -0.7843 5.3776 14 7 9.9342 -0.5334 4.6561 15 14 9.0394 -1.4701 7.1062 16 1 7.6932 -1.6626 7.7027 17 1 9.7480 -2.7740 7.0511 18 1 9.8179 -0.5185 7.9389 19 6 1.6469 2.1143 -1.2905 20 6 2.0921 1.6076 -2.4971 21 6 1.7280 2.2212 -3.6810 22 6 0.9260 3.3470 -3.6578 23 6 0.4850 3.8567 -2.4510 24 6 0.8455 3.2404 -1.2673 25 1 -0.3634 -1.0230 0.0972 26 1 -0.3633 0.4274 -0.9347 27 1 -0.3633 0.5957 0.8374 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.9977 0.8200 -0.6490 31 1 3.9365 2.4640 0.0308 32 1 3.2546 0.6821 2.0895 33 1 5.2515 0.8688 3.8893 34 1 5.2022 -0.7861 3.2360 35 1 10.8162 -0.7043 5.0220 36 1 2.7221 0.7305 -2.5150 37 1 2.0722 1.8228 -4.6240 38 1 0.6436 3.8280 -4.5827 39 1 -0.1412 4.7365 -2.4328 40 1 0.5013 3.6389 -0.3244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031546001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:21 Heat of formation + Delta-G solvation = -54.366636 kcal Electronic energy + Delta-G solvation = -20084.171818 eV Core-core repulsion = 16988.266641 eV Total energy + Delta-G solvation = -3095.905177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97599 -40.16196 -37.36157 -34.72033 -34.57159 -31.81494 -31.75382 -31.17783 -28.69365 -27.63292 -24.68952 -23.84572 -23.22356 -21.75152 -20.89644 -19.82483 -18.05829 -17.55556 -17.23251 -16.87735 -16.69132 -16.27554 -15.80232 -15.74089 -15.23401 -14.88785 -14.82042 -14.50572 -14.26216 -14.17529 -13.78242 -13.49903 -13.41260 -13.15566 -12.91878 -12.81000 -12.59566 -12.39402 -12.03825 -11.92462 -11.71448 -11.57626 -11.53104 -11.15557 -10.97352 -10.26531 -10.12285 -9.77857 -9.58454 -8.66475 -8.34400 -6.12449 0.46350 0.54031 1.27775 1.41943 1.47911 1.58982 1.61621 2.26120 2.30430 2.91333 2.99857 3.32559 3.64343 3.74468 3.96835 4.05068 4.13095 4.19133 4.29593 4.31217 4.34930 4.48582 4.51879 4.58845 4.65006 4.70671 4.73597 4.95654 5.02218 5.08582 5.20162 5.22390 5.27768 5.40681 5.42714 5.45420 5.62492 5.67000 5.74973 6.15415 6.20595 6.50537 7.07020 7.24663 8.75117 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034809 B = 0.002603 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.203258 B =10756.219791 C =11180.366896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.046 4.046 4 H 0.101 0.899 5 C 0.132 3.868 6 N -0.709 5.709 7 C 0.533 3.467 8 O -0.568 6.568 9 C -0.128 4.128 10 S -0.155 6.155 11 C -0.544 4.544 12 H 0.084 0.916 13 C 0.011 3.989 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.256 1.256 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.079 4.079 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.132 4.132 23 C -0.126 4.126 24 C -0.122 4.122 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.417 0.583 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.230 4.881 -11.328 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.065 4.065 4 H 0.120 0.880 5 C 0.008 3.992 6 N -0.364 5.364 7 C 0.318 3.682 8 O -0.446 6.446 9 C -0.280 4.280 10 S 0.073 5.927 11 C -0.692 4.692 12 H 0.102 0.898 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.822 3.178 16 H -0.179 1.179 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.079 4.079 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.144 4.144 24 C -0.140 4.140 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.254 0.746 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.659 5.367 -12.691 27.379 hybrid contribution -0.509 -0.769 1.798 2.021 sum -24.167 4.598 -10.892 26.904 Atomic orbital electron populations 1.21713 0.94549 1.01999 1.01973 1.21624 0.96934 0.94264 1.02634 1.20377 0.92354 0.97567 0.96200 0.88037 1.21368 0.95164 0.98461 0.84193 1.45727 1.06183 1.66458 1.18019 1.20098 0.82964 0.77091 0.88008 1.90696 1.50892 1.51272 1.51753 1.23367 1.01591 1.05382 0.97624 1.85615 1.00322 1.85110 1.21696 1.23233 0.96012 1.49529 1.00382 0.89825 1.26150 0.94315 0.95343 1.03501 1.70194 0.98737 1.46810 1.39130 0.84888 0.78940 0.77752 0.76253 1.17944 1.19958 1.19976 1.19691 0.98085 0.96069 0.94095 1.21185 1.00253 1.00546 0.92657 1.21394 0.98406 0.96481 0.98466 1.21454 0.98032 0.96488 0.98967 1.21440 1.00157 1.00431 0.92371 1.21307 0.98194 0.95174 0.99309 0.92328 0.93250 0.91797 0.90961 0.92204 0.92503 0.92915 0.74586 0.87092 0.87051 0.92014 0.86318 0.84952 0.84410 0.84190 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.64 71.98 0.69 -1.11 16 2 C -0.12 -1.70 5.24 30.59 0.16 -1.54 16 3 C -0.05 -0.73 2.05 -11.54 -0.02 -0.76 16 4 H 0.10 1.30 7.88 -2.39 -0.02 1.28 16 5 C 0.13 3.06 4.78 86.38 0.41 3.47 16 6 N -0.71 -17.75 5.18 -463.06 -2.40 -20.15 16 7 C 0.53 19.75 7.85 87.66 0.69 20.44 16 8 O -0.57 -26.83 15.86 -3.04 -0.05 -26.88 16 9 C -0.13 -5.06 6.16 71.24 0.44 -4.62 16 10 S -0.15 -8.63 20.57 -56.49 -1.16 -9.80 16 11 C -0.54 -31.06 9.50 67.95 0.65 -30.41 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 13 C 0.01 0.65 5.49 84.86 0.47 1.12 16 14 N -0.91 -56.31 13.22 21.65 0.29 -56.02 16 15 Si 1.00 43.62 29.55 68.60 2.03 45.65 16 16 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 18 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 19 C -0.08 -1.34 3.87 -19.87 -0.08 -1.42 16 20 C -0.13 -2.33 8.71 22.27 0.19 -2.14 16 21 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 22 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 23 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 24 C -0.12 -1.84 9.67 22.27 0.22 -1.62 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.68 7.57 -2.38 -0.02 0.66 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 1.01 7.20 -2.39 -0.02 0.99 16 29 H 0.06 0.97 7.24 -2.39 -0.02 0.95 16 30 H 0.06 1.50 7.58 -2.39 -0.02 1.48 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.42 7.34 7.83 -92.70 -0.73 6.62 16 33 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 34 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 35 H 0.27 15.47 8.31 -92.70 -0.77 14.69 16 36 H 0.12 2.14 7.15 -2.91 -0.02 2.12 16 37 H 0.13 1.72 8.06 -2.91 -0.02 1.70 16 38 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.14 1.56 7.95 -2.91 -0.02 1.53 16 Total: -1.00 -76.30 350.19 3.49 -72.81 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.30 Total: 18.06 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 4.49 Total: -23.68 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -2.11 Total: -76.17 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.05 Total: -26.88 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal Total: -76.30 3.49 -72.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031546001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.444 kcal (2) G-P(sol) polarization free energy of solvation -76.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds