Wall clock time and date at job start Tue Mar 31 2020 06:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 N 1.46494 * 109.47345 * 65.00126 * 5 3 2 7 7 C 1.34772 * 120.00365 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99636 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00364 * 179.97438 * 7 6 5 10 10 S 1.81003 * 109.47327 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00256 * 180.02562 * 10 9 7 12 12 H 1.08006 * 119.99709 * 359.97438 * 11 10 9 13 13 C 1.38792 * 120.00136 * 180.02562 * 11 10 9 14 14 N 1.31636 * 120.00335 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00138 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46799 * 60.00089 * 15 13 11 17 17 H 1.48499 * 109.47033 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47021 * 300.00280 * 15 13 11 19 19 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 20 20 C 1.38236 * 119.99963 * 59.72884 * 19 3 2 21 21 C 1.38236 * 120.00036 * 179.81111 * 20 19 3 22 22 C 1.38226 * 119.99834 * 0.39071 * 21 20 19 23 23 C 1.38237 * 120.00085 * 359.86461 * 22 21 20 24 24 C 1.38229 * 120.00216 * 240.00128 * 19 3 2 25 25 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 1.09008 * 109.46873 * 184.99985 * 5 3 2 31 31 H 1.08997 * 109.47047 * 304.99674 * 5 3 2 32 32 H 0.97008 * 119.99803 * 359.97438 * 6 5 3 33 33 H 1.08995 * 109.47322 * 299.99728 * 9 7 6 34 34 H 1.08997 * 109.47214 * 60.00023 * 9 7 6 35 35 H 0.96992 * 120.00178 * 179.97438 * 14 13 11 36 36 H 1.08010 * 119.99941 * 359.97438 * 20 19 3 37 37 H 1.08001 * 119.99466 * 180.23187 * 21 20 19 38 38 H 1.08005 * 120.00406 * 179.83264 * 22 21 20 39 39 H 1.07998 * 120.00065 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00084 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 3.9480 0.8977 -1.4298 7 6 5.2501 0.8021 -1.7643 8 8 6.1046 1.1690 -0.9858 9 6 5.6442 0.2394 -3.1055 10 16 7.4481 0.2415 -3.2543 11 6 7.6230 -0.4454 -4.8674 12 1 6.7463 -0.7217 -5.4346 13 6 8.8872 -0.6323 -5.4088 14 7 9.9557 -0.2969 -4.7170 15 14 9.0726 -1.3612 -7.1188 16 1 8.3850 -0.4900 -8.1054 17 1 10.5141 -1.4561 -7.4628 18 1 8.4660 -2.7164 -7.1476 19 6 1.6414 2.1163 1.2877 20 6 2.0721 1.6049 2.4976 21 6 1.7096 2.2252 3.6785 22 6 0.9098 3.3522 3.6500 23 6 0.4746 3.8605 2.4404 24 6 0.8403 3.2424 1.2593 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.9356 2.4654 -0.0366 31 1 3.9954 0.8310 0.6659 32 1 3.2645 0.6046 -2.0526 33 1 5.2740 -0.7820 -3.1940 34 1 5.2132 0.8519 -3.8974 35 1 10.8392 -0.4279 -5.0952 36 1 2.6941 0.7221 2.5200 37 1 2.0493 1.8277 4.6236 38 1 0.6243 3.8353 4.5728 39 1 -0.1506 4.7408 2.4181 40 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031546004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:25 Heat of formation + Delta-G solvation = -33.356300 kcal Electronic energy + Delta-G solvation = -20080.879277 eV Core-core repulsion = 16985.885176 eV Total energy + Delta-G solvation = -3094.994100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06815 -38.96514 -36.45898 -33.54307 -32.41743 -31.17245 -31.06860 -29.82239 -27.65123 -25.47809 -23.78396 -23.22037 -22.56608 -20.34815 -20.15067 -17.86242 -17.15845 -16.25462 -16.09259 -15.56551 -15.28623 -14.97424 -14.79489 -14.55279 -14.10364 -13.81459 -13.71038 -13.52271 -13.11937 -13.00769 -12.78199 -12.52520 -12.30727 -11.83830 -11.68095 -11.42044 -11.17150 -11.03612 -11.03132 -10.92140 -10.85657 -10.75388 -9.81552 -9.40271 -9.14785 -9.05338 -8.92505 -8.84503 -8.22492 -6.48760 -6.20420 -3.91042 1.11056 1.17437 3.05445 3.12972 3.24146 3.28249 3.32063 3.54452 3.75253 4.21580 4.38354 4.45111 4.74975 4.76083 4.78088 4.89485 4.97131 5.13852 5.14496 5.20810 5.24657 5.30998 5.40046 5.45470 5.64295 5.68526 5.73537 5.80341 5.82581 5.86702 5.92092 5.97915 6.03313 6.15313 6.23970 6.29043 6.41149 6.63630 6.76930 7.60168 7.73039 8.36045 8.64241 9.24625 10.86967 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034667 B = 0.002602 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.490178 B =10756.857118 C =11191.104276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.061 4.061 4 H 0.085 0.915 5 C 0.130 3.870 6 N -0.738 5.738 7 C 0.531 3.469 8 O -0.517 6.517 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.919 3.081 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.068 4.068 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.120 4.120 24 C -0.114 4.114 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.397 0.603 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.269 0.731 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.665 4.117 12.736 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.079 4.079 4 H 0.103 0.897 5 C 0.006 3.994 6 N -0.393 5.393 7 C 0.317 3.683 8 O -0.392 6.392 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.068 4.068 20 C -0.130 4.130 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.133 4.133 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.231 0.769 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -21.020 4.743 14.053 25.725 hybrid contribution -1.211 -0.967 -2.244 2.727 sum -22.230 3.775 11.809 25.453 Atomic orbital electron populations 1.21773 0.95531 1.01610 1.01920 1.21634 0.96159 0.94924 1.02838 1.20473 0.95126 0.96763 0.95566 0.89662 1.21295 0.92684 0.99638 0.85796 1.46017 1.07731 1.67011 1.18568 1.20304 0.81702 0.77732 0.88569 1.90706 1.49418 1.47183 1.51856 1.23527 1.07470 1.03354 0.96030 1.85405 0.92634 1.83082 1.22251 1.22828 0.95263 1.48420 1.01893 0.90988 1.24993 0.94818 0.95251 0.98532 1.70008 0.98135 1.44872 1.37304 0.86226 0.77304 0.79473 0.82502 1.19946 1.20816 1.19941 1.19638 0.97438 0.95499 0.94271 1.21064 0.99810 1.00142 0.91957 1.21153 0.98187 0.96063 0.98176 1.21148 0.98524 0.96766 0.97912 1.21126 1.00220 0.99882 0.92569 1.21067 0.98329 0.95526 0.98332 0.92741 0.92586 0.92753 0.91231 0.91429 0.91472 0.91433 0.76858 0.89248 0.89250 0.92130 0.85917 0.86092 0.86291 0.86194 0.86126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.73 37.16 0.36 -0.73 16 2 C -0.12 -0.95 5.22 -26.73 -0.14 -1.09 16 3 C -0.06 -0.53 2.07 -91.77 -0.19 -0.72 16 4 H 0.09 0.68 7.88 -51.93 -0.41 0.27 16 5 C 0.13 1.55 4.81 -4.04 -0.02 1.54 16 6 N -0.74 -9.82 5.23 -60.30 -0.32 -10.14 16 7 C 0.53 9.98 7.85 -10.99 -0.09 9.90 16 8 O -0.52 -11.95 15.86 5.55 0.09 -11.86 16 9 C -0.15 -3.10 6.16 36.00 0.22 -2.87 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.32 9.50 30.94 0.29 -15.03 16 12 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 13 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 15 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.07 -0.62 3.76 -104.63 -0.39 -1.01 16 20 C -0.11 -1.03 8.71 -39.58 -0.34 -1.37 16 21 C -0.12 -1.00 10.05 -39.59 -0.40 -1.39 16 22 C -0.13 -1.00 10.05 -39.59 -0.40 -1.40 16 23 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 24 C -0.11 -0.97 9.67 -39.59 -0.38 -1.36 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.43 7.38 -51.93 -0.38 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.55 7.07 -51.93 -0.37 0.19 16 29 H 0.07 0.56 7.21 -51.93 -0.37 0.19 16 30 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 31 H 0.07 0.87 7.59 -51.93 -0.39 0.47 16 32 H 0.40 4.09 7.65 -40.82 -0.31 3.77 16 33 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 34 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 35 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.12 1.06 7.13 -52.48 -0.37 0.69 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.86 7.95 -52.49 -0.42 0.44 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -34.30 349.73 -9.39 -43.69 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.96 Total: 0.93 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.97 Total: -14.88 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.42 Total: -35.71 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.30 -9.39 -43.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031546004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.333 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds