Wall clock time and date at job start Tue Mar 31 2020 06:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.53002 * 109.46817 * 184.99998 * 3 2 1 6 6 N 1.46494 * 109.47345 * 65.00126 * 5 3 2 7 7 C 1.34772 * 120.00365 * 179.97438 * 6 5 3 8 8 O 1.21284 * 119.99636 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.00364 * 179.97438 * 7 6 5 10 10 S 1.81003 * 109.47327 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00256 * 180.02562 * 10 9 7 12 12 H 1.08006 * 119.99709 * 359.97438 * 11 10 9 13 13 C 1.38792 * 120.00136 * 180.02562 * 11 10 9 14 14 N 1.31636 * 120.00335 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00138 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46799 * 60.00089 * 15 13 11 17 17 H 1.48499 * 109.47033 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47021 * 300.00280 * 15 13 11 19 19 C 1.50701 * 109.47212 * 64.99766 * 3 2 1 20 20 C 1.38236 * 119.99963 * 59.72884 * 19 3 2 21 21 C 1.38236 * 120.00036 * 179.81111 * 20 19 3 22 22 C 1.38226 * 119.99834 * 0.39071 * 21 20 19 23 23 C 1.38237 * 120.00085 * 359.86461 * 22 21 20 24 24 C 1.38229 * 120.00216 * 240.00128 * 19 3 2 25 25 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 27 27 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 1.09008 * 109.46873 * 184.99985 * 5 3 2 31 31 H 1.08997 * 109.47047 * 304.99674 * 5 3 2 32 32 H 0.97008 * 119.99803 * 359.97438 * 6 5 3 33 33 H 1.08995 * 109.47322 * 299.99728 * 9 7 6 34 34 H 1.08997 * 109.47214 * 60.00023 * 9 7 6 35 35 H 0.96992 * 120.00178 * 179.97438 * 14 13 11 36 36 H 1.08010 * 119.99941 * 359.97438 * 20 19 3 37 37 H 1.08001 * 119.99466 * 180.23187 * 21 20 19 38 38 H 1.08005 * 120.00406 * 179.83264 * 22 21 20 39 39 H 1.07998 * 120.00065 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.00084 * 359.97438 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5649 1.4442 -0.1257 6 7 3.9480 0.8977 -1.4298 7 6 5.2501 0.8021 -1.7643 8 8 6.1046 1.1690 -0.9858 9 6 5.6442 0.2394 -3.1055 10 16 7.4481 0.2415 -3.2543 11 6 7.6230 -0.4454 -4.8674 12 1 6.7463 -0.7217 -5.4346 13 6 8.8872 -0.6323 -5.4088 14 7 9.9557 -0.2969 -4.7170 15 14 9.0726 -1.3612 -7.1188 16 1 8.3850 -0.4900 -8.1054 17 1 10.5141 -1.4561 -7.4628 18 1 8.4660 -2.7164 -7.1476 19 6 1.6414 2.1163 1.2877 20 6 2.0721 1.6049 2.4976 21 6 1.7096 2.2252 3.6785 22 6 0.9098 3.3522 3.6500 23 6 0.4746 3.8605 2.4404 24 6 0.8403 3.2424 1.2593 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.9356 2.4654 -0.0366 31 1 3.9954 0.8310 0.6659 32 1 3.2645 0.6046 -2.0526 33 1 5.2740 -0.7820 -3.1940 34 1 5.2132 0.8519 -3.8974 35 1 10.8392 -0.4279 -5.0952 36 1 2.6941 0.7221 2.5200 37 1 2.0493 1.8277 4.6236 38 1 0.6243 3.8353 4.5728 39 1 -0.1506 4.7408 2.4181 40 1 0.5004 3.6397 0.3142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031546004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:25 Heat of formation + Delta-G solvation = -54.212434 kcal Electronic energy + Delta-G solvation = -20081.783667 eV Core-core repulsion = 16985.885176 eV Total energy + Delta-G solvation = -3095.898490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97935 -40.16488 -37.36643 -34.71679 -34.56848 -31.81152 -31.75143 -31.17935 -28.69878 -27.62835 -24.68962 -23.85229 -23.22947 -21.74489 -20.88399 -19.82486 -18.05616 -17.56782 -17.23530 -16.87165 -16.69142 -16.26850 -15.80885 -15.73732 -15.23971 -14.88699 -14.82026 -14.49581 -14.25457 -14.17859 -13.79320 -13.49950 -13.40089 -13.16464 -12.87650 -12.81635 -12.62648 -12.39376 -12.03182 -11.92272 -11.74461 -11.58539 -11.52225 -11.12264 -10.97518 -10.27228 -10.12367 -9.77849 -9.58578 -8.66446 -8.33830 -6.12235 0.46271 0.53971 1.27542 1.44600 1.47561 1.57322 1.61523 2.26540 2.30556 2.91306 3.00135 3.32685 3.64733 3.74283 3.96081 4.05201 4.13065 4.19081 4.29565 4.31252 4.34779 4.48381 4.51814 4.58801 4.65229 4.70894 4.73740 4.95707 5.02066 5.08327 5.20119 5.22277 5.28028 5.40559 5.42222 5.45669 5.62393 5.66945 5.74899 6.15348 6.20328 6.50362 7.07202 7.24531 8.75200 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034667 B = 0.002602 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.490178 B =10756.857118 C =11191.104276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.047 4.047 4 H 0.100 0.900 5 C 0.132 3.868 6 N -0.710 5.710 7 C 0.532 3.468 8 O -0.568 6.568 9 C -0.129 4.129 10 S -0.154 6.154 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.261 1.261 19 C -0.079 4.079 20 C -0.128 4.128 21 C -0.129 4.129 22 C -0.132 4.132 23 C -0.126 4.126 24 C -0.123 4.123 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.416 0.584 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.271 0.729 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.248 3.906 11.612 28.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.065 4.065 4 H 0.118 0.882 5 C 0.008 3.992 6 N -0.364 5.364 7 C 0.318 3.682 8 O -0.446 6.446 9 C -0.280 4.280 10 S 0.073 5.927 11 C -0.694 4.694 12 H 0.102 0.898 13 C -0.193 4.193 14 N -0.549 5.549 15 Si 0.821 3.179 16 H -0.186 1.186 17 H -0.205 1.205 18 H -0.186 1.186 19 C -0.080 4.080 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.149 4.149 23 C -0.144 4.144 24 C -0.140 4.140 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.254 0.746 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.138 0.862 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.675 4.525 12.928 27.352 hybrid contribution -0.529 -0.853 -1.774 2.038 sum -24.204 3.672 11.154 26.902 Atomic orbital electron populations 1.21719 0.94586 1.01953 1.02050 1.21629 0.96923 0.94201 1.02702 1.20369 0.92320 0.97622 0.96212 0.88167 1.21362 0.95098 0.98315 0.84388 1.45733 1.06182 1.65143 1.19348 1.20100 0.82954 0.77465 0.87650 1.90696 1.51220 1.49667 1.53027 1.23366 1.01571 1.05331 0.97707 1.85609 1.00274 1.83563 1.23246 1.23174 0.96041 1.48312 1.01850 0.89807 1.26148 0.94307 0.95463 1.03334 1.70182 0.98777 1.46296 1.39607 0.84997 0.77475 0.78993 0.76481 1.18613 1.20469 1.18596 1.19689 0.98100 0.96048 0.94115 1.21192 1.00309 1.00489 0.92597 1.21395 0.98385 0.96427 0.98525 1.21453 0.98041 0.96533 0.98914 1.21438 1.00183 1.00416 0.92381 1.21305 0.98172 0.95253 0.99315 0.92320 0.93186 0.91853 0.90879 0.92085 0.92958 0.92479 0.74589 0.87047 0.87084 0.92005 0.86208 0.84909 0.84409 0.84224 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.73 71.98 0.70 -1.09 16 2 C -0.12 -1.67 5.22 30.59 0.16 -1.51 16 3 C -0.05 -0.74 2.07 -11.54 -0.02 -0.76 16 4 H 0.10 1.32 7.88 -2.39 -0.02 1.30 16 5 C 0.13 3.07 4.81 86.38 0.42 3.48 16 6 N -0.71 -17.78 5.23 -463.07 -2.42 -20.20 16 7 C 0.53 19.77 7.85 87.66 0.69 20.46 16 8 O -0.57 -26.85 15.86 -3.04 -0.05 -26.90 16 9 C -0.13 -5.07 6.16 71.23 0.44 -4.63 16 10 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 11 C -0.55 -31.20 9.50 67.95 0.65 -30.55 16 12 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 13 C 0.01 0.69 5.49 84.85 0.47 1.16 16 14 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 15 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 19 C -0.08 -1.34 3.76 -19.87 -0.07 -1.42 16 20 C -0.13 -2.30 8.71 22.27 0.19 -2.10 16 21 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 22 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 23 C -0.13 -1.78 10.05 22.27 0.22 -1.56 16 24 C -0.12 -1.87 9.67 22.27 0.22 -1.65 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.68 7.38 -2.39 -0.02 0.67 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.98 7.07 -2.39 -0.02 0.97 16 29 H 0.06 0.96 7.21 -2.39 -0.02 0.94 16 30 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.06 1.48 7.59 -2.39 -0.02 1.46 16 32 H 0.42 7.37 7.65 -92.70 -0.71 6.66 16 33 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 34 H 0.11 3.90 8.14 -2.40 -0.02 3.89 16 35 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.12 2.12 7.13 -2.91 -0.02 2.10 16 37 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.14 1.35 8.06 -2.91 -0.02 1.32 16 40 H 0.14 1.59 7.95 -2.91 -0.02 1.57 16 Total: -1.00 -76.27 349.73 3.49 -72.78 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.32 Total: 18.32 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 4.50 Total: -23.72 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -2.14 Total: -76.28 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -76.27 3.49 -72.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031546004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.563 kcal (2) G-P(sol) polarization free energy of solvation -76.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds