Wall clock time and date at job start Tue Mar 31 2020 06:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46893 * 2 1 4 4 H 1.09005 * 109.47386 * 305.00139 * 3 2 1 5 5 C 1.50697 * 109.47085 * 185.00355 * 3 2 1 6 6 H 1.08003 * 119.99719 * 239.99339 * 5 3 2 7 7 C 1.37874 * 120.00386 * 59.99824 * 5 3 2 8 8 N 1.31523 * 119.99784 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00286 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46628 * 60.00249 * 9 7 5 11 11 H 1.48502 * 109.46961 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47207 * 300.00340 * 9 7 5 13 13 N 1.46498 * 109.47438 * 64.99972 * 3 2 1 14 14 C 1.34779 * 120.00347 * 275.00139 * 13 3 2 15 15 O 1.21705 * 119.99727 * 0.02562 * 14 13 3 16 16 C 1.46578 * 119.99994 * 179.97438 * 14 13 3 17 17 C 1.36115 * 125.45301 * 180.02562 * 16 14 13 18 18 C 1.38278 * 114.10030 * 180.02562 * 17 16 14 19 19 C 1.35243 * 113.92465 * 0.02562 * 18 17 16 20 20 S 1.70755 * 111.11009 * 359.97438 * 19 18 17 21 21 C 1.51711 * 124.33215 * 179.97438 * 19 18 17 22 22 C 1.53089 * 108.75462 * 343.44449 * 21 19 18 23 23 C 1.53146 * 108.98751 * 50.09512 * 22 21 19 24 24 C 1.52330 * 123.08457 * 179.97438 * 18 17 16 25 25 H 1.08997 * 109.47560 * 59.99993 * 1 2 3 26 26 H 1.08996 * 109.47056 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46794 * 299.99504 * 1 2 3 28 28 H 1.09000 * 109.46794 * 240.00496 * 2 1 3 29 29 H 1.08994 * 109.47139 * 119.99737 * 2 1 3 30 30 H 0.96998 * 119.99834 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99654 * 94.99520 * 13 3 2 32 32 H 1.07999 * 122.95571 * 359.76792 * 17 16 14 33 33 H 1.09004 * 109.58910 * 103.23156 * 21 19 18 34 34 H 1.09001 * 109.58996 * 223.66006 * 21 19 18 35 35 H 1.09005 * 109.55044 * 169.94446 * 22 21 19 36 36 H 1.09000 * 109.55315 * 290.24145 * 22 21 19 37 37 H 1.09000 * 109.51107 * 49.06738 * 23 22 21 38 38 H 1.08996 * 109.51048 * 169.16978 * 23 22 21 39 39 H 1.09001 * 109.57915 * 42.88132 * 24 18 17 40 40 H 1.09000 * 109.69009 * 282.54669 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3978 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3424 2.6318 0.4312 16 6 0.0472 3.3193 2.6197 17 6 -1.1489 3.9241 2.8569 18 6 -1.2651 4.4684 4.1227 19 6 -0.1674 4.3007 4.8948 20 16 1.0515 3.4502 4.0542 21 6 -0.0391 4.8035 6.3204 22 6 -1.1299 5.8472 6.5743 23 6 -2.4798 5.2748 6.1321 24 6 -2.5155 5.1928 4.6048 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1232 1.9977 32 1 -1.9364 3.9781 2.1198 33 1 -0.1608 3.9713 7.0138 34 1 0.9416 5.2582 6.4606 35 1 -1.1657 6.0862 7.6372 36 1 -0.9116 6.7495 6.0031 37 1 -2.6083 4.2779 6.5539 38 1 -3.2825 5.9241 6.4813 39 1 -3.4014 4.6416 4.2896 40 1 -2.5423 6.1983 4.1849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:54 Heat of formation + Delta-G solvation = -34.310717 kcal Electronic energy + Delta-G solvation = -21043.355341 eV Core-core repulsion = 17948.319854 eV Total energy + Delta-G solvation = -3095.035487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.47303 -38.69208 -35.36439 -34.65215 -32.40737 -31.08453 -31.02231 -29.02798 -26.98180 -24.31463 -23.84248 -22.89034 -21.45803 -20.08075 -19.44989 -18.45195 -17.65663 -16.56284 -15.52224 -15.42417 -15.02891 -14.71911 -14.55518 -14.27964 -14.06187 -13.43712 -13.16772 -12.82640 -12.75679 -12.63517 -12.47168 -12.13477 -11.59432 -11.28902 -11.24954 -11.15002 -11.10415 -10.97737 -10.83922 -10.81645 -10.47707 -10.33450 -10.17594 -9.63258 -9.20316 -9.05469 -8.50374 -8.48659 -8.26673 -7.83728 -6.12367 -4.22050 0.73927 1.61173 2.05856 2.51201 3.26076 3.31211 3.32509 3.86694 4.03148 4.37096 4.46502 4.63716 4.64563 4.97709 4.98978 5.18894 5.27740 5.31860 5.44381 5.52132 5.55725 5.64882 5.72566 5.79998 5.89111 6.06448 6.12442 6.38130 6.40362 6.47413 6.54100 6.66935 7.05415 7.19732 7.35018 7.41452 7.61363 7.72008 7.89131 8.16986 8.61250 8.75649 9.05823 9.44869 10.93010 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.003769 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.854510 B = 7426.857838 C = 8121.619125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.573 3.427 15 O -0.536 6.536 16 C -0.241 4.241 17 C -0.068 4.068 18 C -0.115 4.115 19 C -0.212 4.212 20 S 0.191 5.809 21 C -0.047 4.047 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.055 4.055 25 H 0.050 0.950 26 H 0.023 0.977 27 H 0.038 0.962 28 H 0.101 0.899 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.385 0.615 32 H 0.148 0.852 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.003 8.452 17.417 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.348 5.348 14 C 0.357 3.643 15 O -0.417 6.417 16 C -0.362 4.362 17 C -0.100 4.100 18 C -0.129 4.129 19 C -0.331 4.331 20 S 0.461 5.539 21 C -0.086 4.086 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.095 4.095 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.119 0.881 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.218 0.782 32 H 0.166 0.834 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.997 7.789 16.867 19.852 hybrid contribution -0.118 0.397 -0.161 0.445 sum -7.116 8.186 16.706 19.918 Atomic orbital electron populations 1.21850 0.98321 0.98132 1.01272 1.21943 0.92661 0.99660 1.02385 1.18842 0.94346 0.89243 0.80592 0.93046 1.21184 0.90592 1.39259 1.06415 0.92113 1.24878 0.98658 0.94730 0.95308 1.69887 1.35245 1.37459 1.09317 0.86504 0.84774 0.78348 0.77469 1.20121 1.21101 1.20144 1.46444 1.14016 1.55694 1.18696 1.16940 0.83092 0.78948 0.85286 1.90794 1.51596 1.60279 1.38984 1.24755 1.00099 1.11722 0.99628 1.20545 0.96847 0.96304 0.96354 1.19448 0.96654 1.03348 0.93402 1.24547 0.99065 1.07736 1.01743 1.82978 1.16298 1.51106 1.03541 1.20333 0.99840 0.98660 0.89725 1.21552 0.94477 0.98172 1.01150 1.21545 0.97180 1.01494 0.95474 1.20513 0.94032 0.99611 0.95294 0.93078 0.95748 0.94311 0.88122 0.94968 0.92465 0.78225 0.83417 0.90281 0.90497 0.91291 0.91435 0.91631 0.91480 0.90637 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.85 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 6.95 2.24 -69.08 -0.15 6.79 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -14.30 8.73 -34.44 -0.30 -14.60 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.75 11.30 55.43 0.63 -24.12 16 9 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.70 -15.30 5.02 -56.27 -0.28 -15.59 16 14 C 0.57 12.19 6.35 -12.90 -0.08 12.11 16 15 O -0.54 -13.03 13.96 5.18 0.07 -12.96 16 16 C -0.24 -4.16 6.43 -36.98 -0.24 -4.40 16 17 C -0.07 -1.05 9.80 -40.33 -0.40 -1.44 16 18 C -0.12 -1.46 5.75 -104.86 -0.60 -2.07 16 19 C -0.21 -2.55 6.15 -34.88 -0.21 -2.77 16 20 S 0.19 2.60 22.09 -107.50 -2.37 0.23 16 21 C -0.05 -0.41 6.22 -27.34 -0.17 -0.58 16 22 C -0.11 -0.86 5.93 -26.61 -0.16 -1.02 16 23 C -0.12 -0.92 5.89 -26.66 -0.16 -1.08 16 24 C -0.06 -0.53 6.13 -27.08 -0.17 -0.69 16 25 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 28 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 7.52 7.65 -40.82 -0.31 7.21 16 32 H 0.15 2.25 8.05 -52.49 -0.42 1.83 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 37 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 332.18 15.07 5.01 5.01 Total: -1.00 -29.96 332.18 -10.44 -40.40 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.90 Total: 5.57 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -2.56 Total: -14.18 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.34 Total: -39.71 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.37 Total: 0.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.96 -10.44 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.090 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds