Wall clock time and date at job start Tue Mar 31 2020 06:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46893 * 2 1 4 4 H 1.09005 * 109.47386 * 305.00139 * 3 2 1 5 5 C 1.50697 * 109.47085 * 185.00355 * 3 2 1 6 6 H 1.08003 * 119.99719 * 239.99339 * 5 3 2 7 7 C 1.37874 * 120.00386 * 59.99824 * 5 3 2 8 8 N 1.31523 * 119.99784 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00286 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46628 * 60.00249 * 9 7 5 11 11 H 1.48502 * 109.46961 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47207 * 300.00340 * 9 7 5 13 13 N 1.46498 * 109.47438 * 64.99972 * 3 2 1 14 14 C 1.34779 * 120.00347 * 275.00139 * 13 3 2 15 15 O 1.21705 * 119.99727 * 0.02562 * 14 13 3 16 16 C 1.46578 * 119.99994 * 179.97438 * 14 13 3 17 17 C 1.36115 * 125.45301 * 180.02562 * 16 14 13 18 18 C 1.38278 * 114.10030 * 180.02562 * 17 16 14 19 19 C 1.35243 * 113.92465 * 0.02562 * 18 17 16 20 20 S 1.70755 * 111.11009 * 359.97438 * 19 18 17 21 21 C 1.51711 * 124.33215 * 179.97438 * 19 18 17 22 22 C 1.53089 * 108.75462 * 343.44449 * 21 19 18 23 23 C 1.53146 * 108.98751 * 50.09512 * 22 21 19 24 24 C 1.52330 * 123.08457 * 179.97438 * 18 17 16 25 25 H 1.08997 * 109.47560 * 59.99993 * 1 2 3 26 26 H 1.08996 * 109.47056 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46794 * 299.99504 * 1 2 3 28 28 H 1.09000 * 109.46794 * 240.00496 * 2 1 3 29 29 H 1.08994 * 109.47139 * 119.99737 * 2 1 3 30 30 H 0.96998 * 119.99834 * 180.02562 * 8 7 5 31 31 H 0.97001 * 119.99654 * 94.99520 * 13 3 2 32 32 H 1.07999 * 122.95571 * 359.76792 * 17 16 14 33 33 H 1.09004 * 109.58910 * 103.23156 * 21 19 18 34 34 H 1.09001 * 109.58996 * 223.66006 * 21 19 18 35 35 H 1.09005 * 109.55044 * 169.94446 * 22 21 19 36 36 H 1.09000 * 109.55315 * 290.24145 * 22 21 19 37 37 H 1.09000 * 109.51107 * 49.06738 * 23 22 21 38 38 H 1.08996 * 109.51048 * 169.16978 * 23 22 21 39 39 H 1.09001 * 109.57915 * 42.88132 * 24 18 17 40 40 H 1.09000 * 109.69009 * 282.54669 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1734 9 14 6.0049 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2351 11 1 6.3978 0.2169 -2.6505 12 1 6.4994 2.2817 -1.3823 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3670 15 8 -0.3424 2.6318 0.4312 16 6 0.0472 3.3193 2.6197 17 6 -1.1489 3.9241 2.8569 18 6 -1.2651 4.4684 4.1227 19 6 -0.1674 4.3007 4.8948 20 16 1.0515 3.4502 4.0542 21 6 -0.0391 4.8035 6.3204 22 6 -1.1299 5.8472 6.5743 23 6 -2.4798 5.2748 6.1321 24 6 -2.5155 5.1928 4.6048 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 2.2719 2.1232 1.9977 32 1 -1.9364 3.9781 2.1198 33 1 -0.1608 3.9713 7.0138 34 1 0.9416 5.2582 6.4606 35 1 -1.1657 6.0862 7.6372 36 1 -0.9116 6.7495 6.0031 37 1 -2.6083 4.2779 6.5539 38 1 -3.2825 5.9241 6.4813 39 1 -3.4014 4.6416 4.2896 40 1 -2.5423 6.1983 4.1849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177971.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:54 Heat of formation + Delta-G solvation = -51.230123 kcal Electronic energy + Delta-G solvation = -21044.089021 eV Core-core repulsion = 17948.319854 eV Total energy + Delta-G solvation = -3095.769168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.88888 -39.92665 -37.06563 -35.81886 -34.36776 -32.93894 -31.80626 -30.25012 -28.84825 -25.72416 -24.78380 -24.49653 -22.64689 -21.50220 -21.21256 -19.74702 -18.82583 -18.20799 -17.26274 -16.90021 -16.35913 -16.31826 -15.78709 -15.52558 -15.02900 -14.70105 -14.63096 -14.22641 -13.89174 -13.71899 -13.58604 -13.50914 -13.43124 -13.18784 -12.93950 -12.67369 -12.33817 -12.21714 -12.15592 -12.07984 -11.69987 -11.63155 -11.49236 -11.27129 -11.11784 -10.94004 -10.55603 -9.82941 -9.56638 -9.27759 -8.18285 -6.36539 -0.45430 0.47921 0.95472 1.36442 1.44117 1.46347 1.54184 2.27336 2.32065 2.54622 3.10928 3.67474 3.82689 4.03461 4.05823 4.16331 4.29313 4.44737 4.46167 4.52603 4.64841 4.70119 4.70891 4.83753 4.88404 4.99713 5.05563 5.06667 5.16409 5.21346 5.26819 5.38904 5.41152 5.47910 5.49286 5.55545 5.56238 5.73862 5.85985 6.11690 6.68772 6.83837 7.26661 7.42686 8.87189 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.003769 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.854510 B = 7426.857838 C = 8121.619125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.001 0.999 5 C -0.554 4.554 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.701 5.701 14 C 0.573 3.427 15 O -0.579 6.579 16 C -0.292 4.292 17 C -0.058 4.058 18 C -0.130 4.130 19 C -0.191 4.191 20 S 0.216 5.784 21 C -0.051 4.051 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.056 4.056 25 H 0.027 0.973 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.266 0.734 31 H 0.397 0.603 32 H 0.139 0.861 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 9.428 20.737 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.019 0.981 5 C -0.592 4.592 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.349 5.349 14 C 0.360 3.640 15 O -0.462 6.462 16 C -0.412 4.412 17 C -0.092 4.092 18 C -0.142 4.142 19 C -0.311 4.311 20 S 0.487 5.513 21 C -0.090 4.090 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.095 4.095 25 H 0.046 0.954 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.232 0.768 32 H 0.157 0.843 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.516 8.773 20.226 22.990 hybrid contribution -0.340 0.167 -1.110 1.173 sum -6.856 8.940 19.116 22.189 Atomic orbital electron populations 1.21685 0.97051 0.99297 1.00135 1.21795 0.93714 0.98941 1.01509 1.18455 0.93965 0.89271 0.80709 0.98074 1.21515 0.91152 1.39503 1.07006 0.91187 1.25777 1.03540 0.94136 0.94805 1.70039 1.37251 1.38039 1.09802 0.85400 0.78766 0.78512 0.77695 1.18794 1.20959 1.19642 1.46195 1.14812 1.55986 1.17866 1.17423 0.82146 0.78117 0.86323 1.90754 1.52561 1.61827 1.41039 1.24317 1.02299 1.14763 0.99838 1.20747 0.95874 0.95195 0.97421 1.19704 0.98415 1.03835 0.92258 1.25138 0.97757 1.05150 1.03028 1.82794 1.15945 1.51090 1.01484 1.20593 1.01332 0.99743 0.87316 1.21587 0.93502 0.97370 1.02691 1.21565 0.98191 1.02036 0.93677 1.20627 0.92426 0.99491 0.96942 0.95351 0.93241 0.94289 0.90491 0.94052 0.92431 0.76850 0.84290 0.88645 0.89098 0.88830 0.91675 0.91719 0.89442 0.90316 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.51 71.98 0.61 -5.27 16 2 C -0.12 -6.17 5.45 30.60 0.17 -6.00 16 3 C 0.28 14.94 2.24 44.24 0.10 15.03 16 4 H 0.00 0.09 7.58 -2.38 -0.02 0.07 16 5 C -0.55 -30.11 8.73 25.60 0.22 -29.89 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.02 0.97 5.29 84.65 0.45 1.42 16 8 N -0.91 -52.77 11.30 21.45 0.24 -52.52 16 9 Si 0.97 42.41 29.54 68.60 2.03 44.43 16 10 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 N -0.70 -31.67 5.02 -450.17 -2.26 -33.92 16 14 C 0.57 25.46 6.35 86.42 0.55 26.01 16 15 O -0.58 -29.87 13.96 -4.36 -0.06 -29.93 16 16 C -0.29 -10.24 6.43 23.95 0.15 -10.08 16 17 C -0.06 -1.81 9.80 21.78 0.21 -1.60 16 18 C -0.13 -3.09 5.75 -20.02 -0.12 -3.21 16 19 C -0.19 -4.14 6.15 25.32 0.16 -3.98 16 20 S 0.22 5.62 22.09 -56.49 -1.25 4.37 16 21 C -0.05 -0.70 6.22 30.20 0.19 -0.51 16 22 C -0.11 -1.21 5.93 30.67 0.18 -1.03 16 23 C -0.12 -1.38 5.89 30.64 0.18 -1.20 16 24 C -0.06 -0.93 6.13 30.37 0.19 -0.74 16 25 H 0.03 1.43 7.84 -2.39 -0.02 1.41 16 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.04 1.81 5.64 -2.39 -0.01 1.80 16 28 H 0.08 4.33 5.95 -2.39 -0.01 4.31 16 29 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.40 15.76 7.65 -92.71 -0.71 15.05 16 32 H 0.14 4.42 8.05 -2.91 -0.02 4.40 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.06 0.77 8.10 -2.39 -0.02 0.75 16 37 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -67.68 332.18 2.28 -65.40 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.34 Total: 23.22 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 3.24 Total: -21.05 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -2.02 Total: -86.45 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.06 Total: -29.93 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.25 Total: 4.37 kcal Total: -67.68 2.28 -65.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177971.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.172 kcal (2) G-P(sol) polarization free energy of solvation -67.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds