Wall clock time and date at job start Tue Mar 31 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47042 * 90.00112 * 9 7 5 11 11 H 1.48502 * 109.47335 * 210.00151 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99921 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.39952 * 119.99870 * 175.37560 * 16 14 13 18 18 C 1.38861 * 120.06861 * 214.80940 * 17 16 14 19 19 C 1.38122 * 119.92938 * 179.77438 * 18 17 16 20 20 C 1.38284 * 120.06694 * 0.51049 * 19 18 17 21 21 N 1.48022 * 119.93085 * 179.72454 * 20 19 18 22 22 O 1.21798 * 119.99893 * 180.02562 * 21 20 19 23 23 O 1.21800 * 119.99989 * 0.02562 * 21 20 19 24 24 C 1.38282 * 120.13895 * 359.74706 * 20 19 18 25 25 C 1.38112 * 120.07050 * 359.97438 * 24 20 19 26 26 H 1.08999 * 109.47323 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 28 28 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 29 29 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 30 30 H 1.08999 * 109.46930 * 120.00368 * 2 1 3 31 31 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 33 33 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 34 34 H 1.08003 * 120.03789 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.96938 * 180.23995 * 19 18 17 36 36 H 1.08002 * 119.96591 * 180.02562 * 24 20 19 37 37 H 1.08003 * 120.03752 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.4416 2.1142 2.0847 11 1 6.4397 -0.3098 2.1546 12 1 6.6135 0.8417 0.0276 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2123 3.7852 -2.6670 18 6 -1.8353 3.7420 -3.9072 19 6 -3.1152 4.2404 -4.0533 20 6 -3.7720 4.7916 -2.9684 21 7 -5.1412 5.3303 -3.1297 22 8 -5.7207 5.8165 -2.1751 23 8 -5.6884 5.2875 -4.2170 24 6 -3.1522 4.8409 -1.7332 25 6 -1.8748 4.3390 -1.5794 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8294 -0.0619 2.9494 32 1 2.2718 2.1232 -1.9978 33 1 0.7249 3.3614 -3.2365 34 1 -1.3213 3.3154 -4.7559 35 1 -3.6018 4.2036 -5.0167 36 1 -3.6680 5.2716 -0.8877 37 1 -1.3910 4.3781 -0.6145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178280.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:22 Heat of formation + Delta-G solvation = -8.055692 kcal Electronic energy + Delta-G solvation = -22869.740778 eV Core-core repulsion = 19229.550580 eV Total energy + Delta-G solvation = -3640.190198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.16891 -40.67224 -38.87287 -36.56161 -35.78551 -34.62315 -32.67721 -31.53059 -31.34103 -30.23964 -27.23532 -25.97689 -23.57258 -23.28877 -22.42207 -20.98023 -19.77575 -19.38947 -18.83686 -18.33045 -17.88959 -17.52165 -16.21903 -15.70469 -15.29611 -15.06364 -14.75247 -14.48004 -13.98987 -13.56549 -13.54238 -13.35246 -12.80357 -12.43448 -11.84863 -11.72692 -11.56978 -11.39457 -11.22968 -11.16214 -11.10188 -10.98744 -10.70384 -10.46465 -10.34089 -9.83874 -9.70837 -9.47231 -9.21603 -8.68045 -8.63897 -8.06234 -6.26178 -4.36658 -0.18838 0.84614 1.30379 1.42255 2.69789 3.08922 3.15382 3.23100 3.23935 3.56447 4.18851 4.26200 4.37855 4.56026 4.71740 4.80956 5.05887 5.11040 5.36936 5.50609 5.67035 5.86866 6.05785 6.26049 6.31016 6.31845 6.49026 6.58919 6.71505 6.91836 7.12515 7.14538 7.23486 7.49038 7.64354 7.65505 7.75473 8.02197 8.47123 8.62422 8.91912 9.31092 10.79052 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.038099 B = 0.002986 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.743875 B = 9373.454813 C = 9530.342603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.285 3.715 4 H 0.052 0.948 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.690 3.310 15 O -0.569 6.569 16 N -0.693 5.693 17 C 0.241 3.759 18 C -0.160 4.160 19 C -0.032 4.032 20 C -0.078 4.078 21 N 0.037 4.963 22 O -0.170 6.170 23 O -0.175 6.175 24 C -0.032 4.032 25 C -0.125 4.125 26 H 0.023 0.977 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.032 0.968 30 H 0.101 0.899 31 H 0.266 0.734 32 H 0.388 0.612 33 H 0.409 0.591 34 H 0.148 0.852 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 5.933 -11.813 14.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.070 0.930 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.361 5.361 14 C 0.391 3.609 15 O -0.446 6.446 16 N -0.340 5.340 17 C 0.141 3.859 18 C -0.181 4.181 19 C -0.052 4.052 20 C -0.163 4.163 21 N 0.553 4.447 22 O -0.385 6.385 23 O -0.388 6.388 24 C -0.052 4.052 25 C -0.146 4.146 26 H 0.042 0.958 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.221 0.779 33 H 0.245 0.755 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.568 5.433 -10.597 13.599 hybrid contribution 1.263 0.045 -0.687 1.438 sum -5.305 5.478 -11.284 13.619 Atomic orbital electron populations 1.21819 0.98266 0.98149 1.01113 1.21970 0.92658 0.99719 1.02465 1.18811 0.94258 0.88983 0.79541 0.93011 1.21178 0.90421 1.39579 1.06520 0.92027 1.24874 0.98769 0.94619 0.95301 1.69886 1.35292 1.37195 1.09316 0.86425 0.84535 0.77767 0.78242 1.20499 1.20976 1.19849 1.45918 1.12982 1.57595 1.19610 1.16141 0.84021 0.78868 0.81905 1.90919 1.51600 1.64547 1.37572 1.43114 1.11640 1.60153 1.19122 1.17946 0.84854 0.89298 0.93820 1.20882 0.94512 1.05007 0.97742 1.20723 0.93567 0.92769 0.98107 1.21036 0.84602 1.12680 0.98000 1.43603 1.02818 0.98131 1.00114 1.94529 1.65824 1.46064 1.32061 1.94505 1.68374 1.61881 1.14067 1.20971 0.94217 0.94689 0.95324 1.21522 0.94276 0.97586 1.01203 0.95780 0.93051 0.94549 0.94961 0.88055 0.92372 0.77939 0.75456 0.83477 0.82944 0.82880 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.52 37.16 0.32 -2.53 16 2 C -0.13 -2.91 5.45 -26.73 -0.15 -3.06 16 3 C 0.29 6.52 2.24 -69.08 -0.15 6.37 16 4 H 0.05 1.38 7.57 -51.93 -0.39 0.99 16 5 C -0.54 -13.13 8.73 -34.44 -0.30 -13.43 16 6 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.33 11.29 55.43 0.63 -22.71 16 9 Si 0.90 19.49 29.54 -169.99 -5.02 14.47 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 N -0.71 -12.66 5.02 -59.81 -0.30 -12.96 16 14 C 0.69 11.58 6.99 -86.92 -0.61 10.97 16 15 O -0.57 -11.44 10.92 5.29 0.06 -11.38 16 16 N -0.69 -8.18 5.34 -14.22 -0.08 -8.26 16 17 C 0.24 2.78 6.30 -83.69 -0.53 2.26 16 18 C -0.16 -1.44 9.97 -39.39 -0.39 -1.83 16 19 C -0.03 -0.31 9.55 -39.61 -0.38 -0.69 16 20 C -0.08 -0.95 6.85 -79.91 -0.55 -1.49 16 21 N 0.04 0.52 4.45 33.98 0.15 0.67 16 22 O -0.17 -2.51 18.44 -29.46 -0.54 -3.05 16 23 O -0.18 -2.47 18.44 -29.46 -0.54 -3.01 16 24 C -0.03 -0.38 9.55 -39.61 -0.38 -0.76 16 25 C -0.12 -1.59 8.70 -39.40 -0.34 -1.94 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 28 H 0.04 0.73 5.66 -51.93 -0.29 0.44 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.39 5.78 8.56 -40.82 -0.35 5.43 16 33 H 0.41 3.36 8.84 -40.82 -0.36 2.99 16 34 H 0.15 0.89 8.06 -52.48 -0.42 0.46 16 35 H 0.15 1.21 7.60 -52.49 -0.40 0.81 16 36 H 0.15 1.65 7.60 -52.49 -0.40 1.25 16 37 H 0.17 2.44 6.22 -52.48 -0.33 2.11 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -29.06 319.15 -8.44 -37.50 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -4.05 Total: 8.43 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.55 Total: -4.50 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.40 Total: -43.25 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -1.03 Total: -17.45 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.06 -8.44 -37.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178280.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.440 kcal (2) G-P(sol) polarization free energy of solvation -29.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds