Wall clock time and date at job start Tue Mar 31 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 H 1.08997 * 109.47091 * 55.00392 * 3 2 1 5 5 C 1.50703 * 109.46967 * 175.00268 * 3 2 1 6 6 H 1.07996 * 119.99621 * 119.99895 * 5 3 2 7 7 C 1.37869 * 120.00070 * 299.99964 * 5 3 2 8 8 N 1.31521 * 119.99915 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00137 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47042 * 90.00112 * 9 7 5 11 11 H 1.48502 * 109.47335 * 210.00151 * 9 7 5 12 12 H 1.48500 * 109.46974 * 329.99921 * 9 7 5 13 13 N 1.46501 * 109.47309 * 295.00167 * 3 2 1 14 14 C 1.34776 * 119.99926 * 85.27527 * 13 3 2 15 15 O 1.21591 * 119.99937 * 359.72610 * 14 13 3 16 16 N 1.34773 * 120.00081 * 179.72408 * 14 13 3 17 17 C 1.39952 * 119.99870 * 175.37560 * 16 14 13 18 18 C 1.38861 * 120.06861 * 214.80940 * 17 16 14 19 19 C 1.38122 * 119.92938 * 179.77438 * 18 17 16 20 20 C 1.38284 * 120.06694 * 0.51049 * 19 18 17 21 21 N 1.48022 * 119.93085 * 179.72454 * 20 19 18 22 22 O 1.21798 * 119.99893 * 180.02562 * 21 20 19 23 23 O 1.21800 * 119.99989 * 0.02562 * 21 20 19 24 24 C 1.38282 * 120.13895 * 359.74706 * 20 19 18 25 25 C 1.38112 * 120.07050 * 359.97438 * 24 20 19 26 26 H 1.08999 * 109.47323 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47076 * 299.99228 * 1 2 3 28 28 H 1.08995 * 109.47576 * 59.99933 * 1 2 3 29 29 H 1.08998 * 109.46565 * 240.00222 * 2 1 3 30 30 H 1.08999 * 109.46930 * 120.00368 * 2 1 3 31 31 H 0.97007 * 120.00071 * 179.97438 * 8 7 5 32 32 H 0.96996 * 120.00098 * 265.00172 * 13 3 2 33 33 H 0.96995 * 120.00043 * 355.38323 * 16 14 13 34 34 H 1.08003 * 120.03789 * 0.02562 * 18 17 16 35 35 H 1.07999 * 119.96938 * 180.23995 * 19 18 17 36 36 H 1.08002 * 119.96591 * 180.02562 * 24 20 19 37 37 H 1.08003 * 120.03752 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4062 0.3366 2.1727 9 14 6.0049 0.8813 1.3816 10 1 6.4416 2.1142 2.0847 11 1 6.4397 -0.3098 2.1546 12 1 6.6135 0.8417 0.0276 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3650 15 8 -0.3394 2.6371 -0.4299 16 7 0.0826 3.2767 -2.5146 17 6 -1.2123 3.7852 -2.6670 18 6 -1.8353 3.7420 -3.9072 19 6 -3.1152 4.2404 -4.0533 20 6 -3.7720 4.7916 -2.9684 21 7 -5.1412 5.3303 -3.1297 22 8 -5.7207 5.8165 -2.1751 23 8 -5.6884 5.2875 -4.2170 24 6 -3.1522 4.8409 -1.7332 25 6 -1.8748 4.3390 -1.5794 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8294 -0.0619 2.9494 32 1 2.2718 2.1232 -1.9978 33 1 0.7249 3.3614 -3.2365 34 1 -1.3213 3.3154 -4.7559 35 1 -3.6018 4.2036 -5.0167 36 1 -3.6680 5.2716 -0.8877 37 1 -1.3910 4.3781 -0.6145 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178280.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:21 Heat of formation + Delta-G solvation = -25.895455 kcal Electronic energy + Delta-G solvation = -22870.514368 eV Core-core repulsion = 19229.550580 eV Total energy + Delta-G solvation = -3640.963788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.21106 -41.84353 -40.01271 -37.63833 -37.30103 -35.91604 -34.38457 -32.93220 -32.40227 -31.43587 -28.95917 -27.11421 -25.08059 -24.43907 -23.55984 -22.29535 -21.42644 -20.38219 -20.05262 -19.54640 -19.01132 -18.57036 -17.91790 -17.05565 -16.81280 -16.16249 -16.00041 -15.77383 -15.16379 -14.75140 -14.64960 -14.55296 -14.31670 -13.89417 -13.53623 -13.18546 -12.89479 -12.77231 -12.70314 -12.63863 -12.30167 -12.27402 -12.16749 -12.08065 -11.83810 -11.54433 -11.16807 -11.04306 -10.54468 -10.37646 -9.88005 -9.46874 -8.16706 -6.33531 -1.20924 0.00226 0.28281 0.43147 1.45232 1.46032 1.54485 1.58933 1.99831 2.40285 2.44158 3.13689 3.29842 3.45056 3.54123 3.83849 3.88019 4.28405 4.44925 4.49858 4.57020 4.69445 4.74154 4.79902 4.97807 5.04385 5.10348 5.24235 5.26735 5.42531 5.50715 5.59594 5.60778 5.70092 5.84189 6.14538 6.17678 6.54026 6.74465 7.14063 7.34421 7.60002 8.88396 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.038099 B = 0.002986 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.743875 B = 9373.454813 C = 9530.342603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.122 4.122 3 C 0.296 3.704 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.259 1.259 13 N -0.708 5.708 14 C 0.692 3.308 15 O -0.606 6.606 16 N -0.672 5.672 17 C 0.229 3.771 18 C -0.133 4.133 19 C -0.022 4.022 20 C -0.088 4.088 21 N 0.038 4.962 22 O -0.207 6.207 23 O -0.166 6.166 24 C -0.035 4.035 25 C -0.140 4.140 26 H 0.041 0.959 27 H 0.026 0.974 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.405 0.595 33 H 0.431 0.569 34 H 0.191 0.809 35 H 0.180 0.820 36 H 0.153 0.847 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 5.794 -15.016 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.021 0.979 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.183 1.183 13 N -0.360 5.360 14 C 0.392 3.608 15 O -0.485 6.485 16 N -0.321 5.321 17 C 0.130 3.870 18 C -0.154 4.154 19 C -0.042 4.042 20 C -0.173 4.173 21 N 0.550 4.450 22 O -0.413 6.413 23 O -0.384 6.384 24 C -0.055 4.055 25 C -0.161 4.161 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.271 0.729 34 H 0.208 0.792 35 H 0.198 0.802 36 H 0.171 0.829 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.721 5.351 -13.819 15.885 hybrid contribution 0.943 0.122 0.230 0.979 sum -4.778 5.473 -13.589 15.409 Atomic orbital electron populations 1.21648 0.97047 0.98935 1.00221 1.21813 0.93623 0.99295 1.01409 1.18299 0.93443 0.88838 0.80164 0.97877 1.21561 0.91348 1.38897 1.06679 0.90746 1.25712 1.02997 0.94460 0.95148 1.70042 1.36995 1.38281 1.09879 0.85417 0.79468 0.77262 0.78613 1.20639 1.21304 1.18337 1.45453 1.13995 1.57898 1.18667 1.16180 0.83178 0.78716 0.82688 1.90920 1.52532 1.65665 1.39406 1.42665 1.12348 1.59017 1.18027 1.18127 0.84628 0.89593 0.94615 1.21224 0.93746 1.02957 0.97508 1.21111 0.93587 0.91167 0.98326 1.21220 0.83762 1.13444 0.98833 1.43847 1.03395 0.97881 0.99845 1.94538 1.66686 1.47752 1.32335 1.94474 1.68724 1.61210 1.13982 1.20922 0.93990 0.94815 0.95788 1.21330 0.94781 0.99069 1.00944 0.94018 0.95526 0.93780 0.93884 0.91051 0.92631 0.75945 0.72930 0.79189 0.80231 0.82902 0.84010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 8.52 71.98 0.61 -4.46 16 2 C -0.12 -5.56 5.45 30.59 0.17 -5.39 16 3 C 0.30 13.71 2.24 44.25 0.10 13.81 16 4 H 0.00 0.19 7.57 -2.39 -0.02 0.17 16 5 C -0.55 -26.51 8.73 25.60 0.22 -26.29 16 6 H 0.07 3.33 7.74 -2.91 -0.02 3.31 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -49.73 11.29 21.45 0.24 -49.49 16 9 Si 0.97 39.72 29.54 68.60 2.03 41.75 16 10 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 11 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 13 N -0.71 -24.56 5.02 -461.41 -2.32 -26.87 16 14 C 0.69 22.64 6.99 179.06 1.25 23.89 16 15 O -0.61 -24.84 10.92 -4.00 -0.04 -24.88 16 16 N -0.67 -14.17 5.34 -317.18 -1.70 -15.86 16 17 C 0.23 4.75 6.30 38.14 0.24 4.99 16 18 C -0.13 -1.81 9.97 22.39 0.22 -1.58 16 19 C -0.02 -0.35 9.55 22.25 0.21 -0.14 16 20 C -0.09 -1.97 6.85 36.40 0.25 -1.72 16 21 N 0.04 1.01 4.45 -46.41 -0.21 0.80 16 22 O -0.21 -6.17 18.44 18.89 0.35 -5.82 16 23 O -0.17 -4.39 18.44 18.89 0.35 -4.04 16 24 C -0.04 -0.83 9.55 22.25 0.21 -0.62 16 25 C -0.14 -3.55 8.70 22.39 0.19 -3.35 16 26 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.03 1.21 7.85 -2.39 -0.02 1.19 16 28 H 0.04 1.75 5.66 -2.39 -0.01 1.74 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 3.71 5.95 -2.39 -0.01 3.70 16 31 H 0.26 13.76 8.31 -92.70 -0.77 12.98 16 32 H 0.41 11.17 8.56 -92.71 -0.79 10.38 16 33 H 0.43 5.41 8.84 -92.71 -0.82 4.59 16 34 H 0.19 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.18 1.94 7.60 -2.91 -0.02 1.92 16 36 H 0.15 3.48 7.60 -2.91 -0.02 3.46 16 37 H 0.14 4.38 6.22 -2.91 -0.02 4.36 16 Total: -1.00 -65.38 319.15 2.36 -63.02 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -0.47 Total: 20.93 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 4.13 Total: 0.46 kcal Atomic # 7 Polarization: -87.45 SS G_CDS: -3.98 Total: -91.42 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: 0.65 Total: -34.74 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -65.38 2.36 -63.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178280.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.125 kcal (2) G-P(sol) polarization free energy of solvation -65.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds