Wall clock time and date at job start Tue Mar 31 2020 06:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47061 * 2 1 4 4 N 1.46503 * 109.47359 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00383 * 264.75229 * 4 3 2 6 6 H 1.07997 * 120.00269 * 146.15957 * 5 4 3 7 7 C 1.38956 * 119.99783 * 326.16876 * 5 4 3 8 8 N 1.31409 * 119.99809 * 337.67397 * 7 5 4 9 9 Si 1.86796 * 119.99875 * 157.67607 * 7 5 4 10 10 H 1.48502 * 109.46927 * 89.99902 * 9 7 5 11 11 H 1.48502 * 109.47223 * 209.99579 * 9 7 5 12 12 H 1.48497 * 109.47531 * 329.99962 * 9 7 5 13 13 C 1.34783 * 119.99683 * 84.74934 * 4 3 2 14 14 O 1.21293 * 119.99827 * 180.02562 * 13 4 3 15 15 C 1.50694 * 120.00014 * 0.02562 * 13 4 3 16 16 S 1.81405 * 109.47250 * 179.97438 * 15 13 4 17 17 C 1.76195 * 103.00104 * 179.97438 * 16 15 13 18 18 C 1.38999 * 120.08039 * 0.02562 * 17 16 15 19 19 C 1.38065 * 119.91812 * 180.02562 * 18 17 16 20 20 C 1.38326 * 120.07832 * 0.02562 * 19 18 17 21 21 C 1.38278 * 120.16426 * 359.97438 * 20 19 18 22 22 C 1.38109 * 120.07897 * 0.02562 * 21 20 19 23 23 C 1.50700 * 120.03766 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.47242 * 59.99787 * 1 2 3 25 25 H 1.08999 * 109.46929 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47024 * 299.99343 * 1 2 3 27 27 H 1.09005 * 109.46919 * 240.00249 * 2 1 3 28 28 H 1.08999 * 109.47242 * 120.00212 * 2 1 3 29 29 H 1.09005 * 109.47051 * 60.00330 * 3 2 1 30 30 H 1.08999 * 109.47266 * 300.00198 * 3 2 1 31 31 H 0.97001 * 120.00100 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47422 * 59.99402 * 15 13 4 33 33 H 1.09006 * 109.47148 * 299.99621 * 15 13 4 34 34 H 1.07997 * 120.04185 * 359.97438 * 18 17 16 35 35 H 1.07993 * 119.95492 * 179.72273 * 19 18 17 36 36 H 1.07998 * 119.91241 * 179.97438 * 20 19 18 37 37 H 1.07995 * 119.96138 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47177 * 270.01736 * 23 22 21 39 39 H 1.08993 * 109.47221 * 30.02562 * 23 22 21 40 40 H 1.09003 * 109.46412 * 150.02305 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1900 1.5514 1.1831 6 1 5.1328 1.0400 1.3101 7 6 3.6713 2.3194 2.2184 8 7 2.8002 3.2686 1.9596 9 14 4.2122 2.0026 3.9781 10 1 5.4016 2.8361 4.2879 11 1 3.1072 2.3527 4.9063 12 1 4.5580 0.5675 4.1390 13 6 4.1793 1.3356 -1.1615 14 8 5.3923 1.3352 -1.1610 15 6 3.4263 1.2165 -2.4614 16 16 4.6056 1.0908 -3.8340 17 6 3.5588 0.9607 -5.2453 18 6 2.1774 0.9749 -5.0918 19 6 1.3603 0.8723 -6.1999 20 6 1.9148 0.7549 -7.4617 21 6 3.2886 0.7404 -7.6183 22 6 4.1123 0.8427 -6.5144 23 6 5.6094 0.8263 -6.6861 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6766 1.9563 0.8901 30 1 1.6766 1.9563 -0.8899 31 1 2.4383 3.8051 2.6822 32 1 2.7999 2.0976 -2.6005 33 1 2.7994 0.3251 -2.4378 34 1 1.7438 1.0653 -4.1068 35 1 0.2870 0.8787 -6.0809 36 1 1.2731 0.6743 -8.3266 37 1 3.7181 0.6483 -8.6049 38 1 5.9699 -0.2009 -6.6327 39 1 5.8686 1.2526 -7.6551 40 1 6.0722 1.4154 -5.8943 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060542088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:12 Heat of formation + Delta-G solvation = -31.995282 kcal Electronic energy + Delta-G solvation = -20980.465269 eV Core-core repulsion = 17885.530187 eV Total energy + Delta-G solvation = -3094.935082 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52915 -40.02515 -37.22668 -34.66796 -33.77107 -33.12454 -32.21463 -30.77180 -27.83233 -27.49786 -26.17867 -23.71542 -22.69275 -22.43090 -20.99839 -18.94001 -18.47548 -17.97374 -16.91462 -16.78898 -16.38348 -16.23500 -16.01025 -15.47421 -15.28361 -14.88413 -14.71711 -14.37609 -14.08906 -13.93447 -13.74171 -13.44335 -13.19792 -13.05447 -13.03995 -12.97084 -12.67266 -12.46839 -12.25818 -12.12613 -12.03353 -11.95870 -11.58837 -11.01441 -10.90825 -10.64861 -10.55964 -9.68651 -9.54151 -8.41482 -8.37522 -6.10067 0.30522 0.39223 0.44075 1.34105 1.40532 1.49126 1.53145 1.87746 2.26228 2.77702 2.92983 2.96175 3.78404 3.89401 3.93663 3.95504 4.03577 4.19644 4.25597 4.33128 4.43171 4.54296 4.56948 4.70135 4.71675 4.77152 4.80352 4.93814 5.02142 5.10708 5.26198 5.28133 5.35419 5.38846 5.43568 5.54948 5.56348 5.60024 6.05620 6.12490 6.43188 7.08275 7.34956 7.93089 8.62041 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.023093 B = 0.004112 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.183304 B = 6807.277331 C = 7693.475495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.099 3.901 4 N -0.441 5.441 5 C -0.346 4.346 6 H 0.066 0.934 7 C 0.009 3.991 8 N -0.883 5.883 9 Si 0.981 3.019 10 H -0.278 1.278 11 H -0.264 1.264 12 H -0.267 1.267 13 C 0.455 3.545 14 O -0.614 6.614 15 C -0.117 4.117 16 S -0.082 6.082 17 C -0.116 4.116 18 C -0.149 4.149 19 C -0.110 4.110 20 C -0.124 4.124 21 C -0.105 4.105 22 C -0.085 4.085 23 C -0.116 4.116 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.276 0.724 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.285 -5.296 -15.321 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C -0.024 4.024 4 N -0.159 5.159 5 C -0.474 4.474 6 H 0.084 0.916 7 C -0.195 4.195 8 N -0.521 5.521 9 Si 0.804 3.196 10 H -0.204 1.204 11 H -0.188 1.188 12 H -0.192 1.192 13 C 0.243 3.757 14 O -0.500 6.500 15 C -0.268 4.268 16 S 0.162 5.838 17 C -0.229 4.229 18 C -0.172 4.172 19 C -0.129 4.129 20 C -0.144 4.144 21 C -0.125 4.125 22 C -0.091 4.091 23 C -0.173 4.173 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.166 0.834 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.592 -5.117 -14.959 17.129 hybrid contribution -0.913 0.181 1.190 1.510 sum -7.504 -4.936 -13.769 16.440 Atomic orbital electron populations 1.21630 0.93007 1.02525 1.02320 1.21888 0.97649 0.96391 1.01223 1.21848 0.79631 0.96992 1.03941 1.43698 1.06221 1.61949 1.04065 1.19422 1.07288 1.30254 0.90390 0.91638 1.26058 0.96915 0.92716 1.03770 1.69972 1.30919 1.16694 1.34465 0.85145 0.78263 0.78944 0.77272 1.20387 1.18822 1.19191 1.20172 0.87679 0.82663 0.85228 1.90516 1.15610 1.56855 1.87047 1.23685 1.01450 1.07161 0.94462 1.86189 1.11174 1.91036 0.95381 1.22139 0.97124 1.06497 0.97136 1.21397 0.91874 1.03451 1.00523 1.21367 1.00657 0.98781 0.92114 1.21545 0.95243 0.99694 0.97946 1.21320 0.93691 0.99171 0.98297 1.19829 0.97273 1.00928 0.91079 1.20822 0.90370 1.02938 1.03208 0.91484 0.91094 0.92948 0.92579 0.93381 0.88631 0.91936 0.91394 0.86999 0.86223 0.85978 0.83446 0.82755 0.82893 0.90373 0.88827 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.13 -4.57 6.17 30.59 0.19 -4.38 16 3 C 0.10 4.19 4.72 86.38 0.41 4.60 16 4 N -0.44 -22.75 2.56 -635.53 -1.63 -24.38 16 5 C -0.35 -19.69 8.98 84.04 0.75 -18.93 16 6 H 0.07 4.01 7.70 -2.91 -0.02 3.99 16 7 C 0.01 0.46 4.92 84.93 0.42 0.87 16 8 N -0.88 -46.80 11.33 21.66 0.25 -46.55 16 9 Si 0.98 41.91 29.61 68.60 2.03 43.94 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 13 C 0.45 23.18 7.61 87.65 0.67 23.84 16 14 O -0.61 -36.41 15.69 -3.07 -0.05 -36.46 16 15 C -0.12 -4.52 3.42 71.23 0.24 -4.28 16 16 S -0.08 -3.10 19.27 -56.49 -1.09 -4.19 16 17 C -0.12 -3.50 6.11 22.62 0.14 -3.37 16 18 C -0.15 -3.93 9.36 22.41 0.21 -3.72 16 19 C -0.11 -2.23 10.04 22.25 0.22 -2.00 16 20 C -0.12 -2.18 10.04 22.30 0.22 -1.95 16 21 C -0.11 -2.04 9.70 22.25 0.22 -1.83 16 22 C -0.09 -2.17 5.90 -19.72 -0.12 -2.29 16 23 C -0.12 -2.67 9.57 71.24 0.68 -1.99 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.82 6.60 -2.38 -0.02 1.81 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.10 4.49 5.34 -2.38 -0.01 4.48 16 30 H 0.06 2.38 6.66 -2.39 -0.02 2.36 16 31 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 32 H 0.11 4.01 7.02 -2.39 -0.02 3.99 16 33 H 0.12 4.04 6.14 -2.39 -0.01 4.03 16 34 H 0.12 3.12 5.88 -2.91 -0.02 3.11 16 35 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 36 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 40 H 0.05 1.47 6.78 -2.39 -0.02 1.45 16 Total: -1.00 -69.82 339.63 5.52 -64.31 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 1.03 Total: 21.57 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 4.97 Total: -18.24 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.38 Total: -70.93 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.05 Total: -36.46 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -1.09 Total: -4.19 kcal Total: -69.82 5.52 -64.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.313 kcal (2) G-P(sol) polarization free energy of solvation -69.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds