Wall clock time and date at job start Tue Mar 31 2020 07:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46707 * 2 1 4 4 C 1.50704 * 109.47044 * 119.99910 * 2 1 3 5 5 H 1.08003 * 119.99473 * 119.99495 * 4 2 1 6 6 C 1.37870 * 120.00330 * 300.00228 * 4 2 1 7 7 N 1.31522 * 119.99900 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00281 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47015 * 89.99488 * 8 6 4 10 10 H 1.48497 * 109.47259 * 209.99572 * 8 6 4 11 11 H 1.48497 * 109.47152 * 330.00029 * 8 6 4 12 12 N 1.46494 * 109.47016 * 240.00003 * 2 1 3 13 13 C 1.34775 * 119.99874 * 84.99903 * 12 2 1 14 14 O 1.21704 * 120.00223 * 359.97438 * 13 12 2 15 15 C 1.46589 * 120.00008 * 180.02562 * 13 12 2 16 16 C 1.36116 * 125.45454 * 180.02562 * 15 13 12 17 17 C 1.38280 * 114.09962 * 179.97438 * 16 15 13 18 18 C 1.35238 * 113.92330 * 359.97438 * 17 16 15 19 19 S 1.70755 * 111.11248 * 359.97438 * 18 17 16 20 20 C 1.51940 * 124.37265 * 179.97438 * 18 17 16 21 21 C 1.53094 * 108.62498 * 343.46421 * 20 18 17 22 22 C 1.53146 * 109.06488 * 50.09150 * 21 20 18 23 23 H 1.08999 * 109.51127 * 49.03245 * 22 21 20 24 24 C 1.53003 * 109.50747 * 169.17071 * 22 21 20 25 25 C 1.52330 * 123.07829 * 180.02562 * 17 16 15 26 26 H 1.09008 * 109.47293 * 300.00046 * 1 2 3 27 27 H 1.09000 * 109.47430 * 59.99957 * 1 2 3 28 28 H 1.09008 * 109.47156 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00010 * 180.02562 * 7 6 4 30 30 H 0.97003 * 120.00422 * 265.00168 * 12 2 1 31 31 H 1.08002 * 122.95333 * 359.97438 * 16 15 13 32 32 H 1.08996 * 109.71859 * 223.68165 * 20 18 17 33 33 H 1.09003 * 109.58698 * 103.16543 * 20 18 17 34 34 H 1.09002 * 109.55199 * 290.19058 * 21 20 18 35 35 H 1.09003 * 109.55220 * 169.99562 * 21 20 18 36 36 H 1.09004 * 109.46919 * 60.00607 * 24 22 21 37 37 H 1.09004 * 109.47002 * 179.97438 * 24 22 21 38 38 H 1.08996 * 109.47579 * 300.00388 * 24 22 21 39 39 H 1.08992 * 109.57898 * 42.89060 * 25 17 16 40 40 H 1.09003 * 109.57684 * 282.48888 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9493 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8571 1.1625 -2.4119 15 6 2.6350 -0.7094 -3.5541 16 6 2.8075 -0.1410 -4.7789 17 6 3.2816 -1.0110 -5.7434 18 6 3.4882 -2.2693 -5.2930 19 16 3.0933 -2.4025 -3.6371 20 6 4.0041 -3.4132 -6.1498 21 6 3.8479 -3.0293 -7.6235 22 6 4.4469 -1.6372 -7.8440 23 1 5.4417 -1.5945 -7.4006 24 6 4.5429 -1.3541 -9.3446 25 6 3.5486 -0.5908 -7.1831 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7095 1.1617 3.4844 30 1 2.2490 -1.6318 -1.1526 31 1 2.5929 0.8983 -4.9797 32 1 3.4283 -4.3155 -5.9441 33 1 5.0565 -3.5902 -5.9278 34 1 2.7903 -3.0173 -7.8872 35 1 4.3710 -3.7545 -8.2468 36 1 3.5472 -1.3949 -9.7864 37 1 4.9689 -0.3630 -9.5008 38 1 5.1803 -2.1024 -9.8155 39 1 4.0471 0.3783 -7.1942 40 1 2.6053 -0.5249 -7.7252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:44 Heat of formation + Delta-G solvation = -37.076698 kcal Electronic energy + Delta-G solvation = -20676.606577 eV Core-core repulsion = 17581.451148 eV Total energy + Delta-G solvation = -3095.155429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.58631 -38.67823 -35.67330 -34.70542 -32.43721 -32.09279 -29.93785 -28.59862 -26.81961 -25.27285 -24.29477 -23.05523 -21.46449 -20.16329 -19.63296 -18.48875 -17.70722 -16.55222 -15.62109 -15.36346 -14.82737 -14.81141 -14.49420 -14.28270 -14.11192 -13.65714 -13.29527 -13.04036 -12.76678 -12.43169 -12.37226 -12.31268 -12.05026 -11.72160 -11.39284 -11.15187 -11.05347 -10.97389 -10.87186 -10.75811 -10.69515 -10.49442 -10.31331 -10.23655 -9.25554 -9.06487 -8.56752 -8.50106 -8.27904 -7.92307 -6.12730 -4.22192 0.73375 1.60683 2.05455 2.50706 3.25002 3.31373 3.33502 3.84709 4.01351 4.35941 4.40626 4.52949 4.56111 4.86332 4.95056 5.17522 5.19615 5.25580 5.31468 5.43183 5.50022 5.53323 5.56132 5.61648 5.66805 5.76756 5.86380 5.92984 6.12595 6.14939 6.38377 6.53600 6.82644 6.95812 7.13712 7.40540 7.53793 7.68102 7.89948 8.13321 8.60131 8.75460 9.03692 9.44969 10.93410 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034178 B = 0.003279 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.051971 B = 8538.227868 C = 9065.190128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.265 3.735 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.702 5.702 13 C 0.573 3.427 14 O -0.543 6.543 15 C -0.242 4.242 16 C -0.067 4.067 17 C -0.115 4.115 18 C -0.211 4.211 19 S 0.192 5.808 20 C -0.046 4.046 21 C -0.109 4.109 22 C -0.093 4.093 23 H 0.073 0.927 24 C -0.147 4.147 25 C -0.050 4.050 26 H 0.092 0.908 27 H 0.016 0.984 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.386 0.614 31 H 0.148 0.852 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.319 -8.916 -20.506 23.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.069 0.931 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.349 5.349 13 C 0.357 3.643 14 O -0.423 6.423 15 C -0.362 4.362 16 C -0.100 4.100 17 C -0.128 4.128 18 C -0.331 4.331 19 S 0.462 5.538 20 C -0.085 4.085 21 C -0.148 4.148 22 C -0.111 4.111 23 H 0.091 0.909 24 C -0.204 4.204 25 C -0.089 4.089 26 H 0.110 0.890 27 H 0.035 0.965 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.219 0.781 31 H 0.166 0.834 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.028 -9.145 -19.232 22.132 hybrid contribution 0.345 0.301 -0.070 0.464 sum 6.373 -8.843 -19.302 22.168 Atomic orbital electron populations 1.22090 0.98249 0.99254 1.01045 1.18807 0.91177 0.94036 0.79634 0.93096 1.21205 1.32549 1.13302 0.90264 0.92032 1.24885 0.94755 0.94971 0.99055 1.69906 1.35782 1.22430 1.23931 0.86427 0.78613 0.79861 0.82092 1.20519 1.21028 1.19795 1.46476 1.64752 1.13257 1.10399 1.17013 0.78670 0.86465 0.82115 1.90780 1.51759 1.15095 1.84685 1.24723 1.13934 0.97952 0.99637 1.20547 0.97960 1.01134 0.90340 1.19439 1.04183 0.92050 0.97125 1.24600 1.09343 0.99471 0.99637 1.82973 1.59952 1.07192 1.03669 1.20376 1.00916 0.93932 0.93294 1.21618 1.01664 0.96600 0.94930 1.21137 0.99520 0.94732 0.95730 0.90858 1.21830 1.01839 1.01586 0.95153 1.20566 0.99791 0.98509 0.90008 0.88965 0.96531 0.95371 0.92527 0.78141 0.83405 0.90436 0.90253 0.91443 0.91240 0.92581 0.92530 0.92626 0.90611 0.90635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.26 37.16 0.34 -3.43 16 2 C 0.26 6.95 2.56 -69.08 -0.18 6.77 16 3 H 0.05 1.53 7.58 -51.93 -0.39 1.13 16 4 C -0.53 -14.44 8.73 -34.44 -0.30 -14.74 16 5 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.08 11.32 55.43 0.63 -24.46 16 8 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -15.64 5.06 -56.27 -0.28 -15.92 16 13 C 0.57 12.54 7.75 -12.89 -0.10 12.44 16 14 O -0.54 -13.77 16.49 5.19 0.09 -13.69 16 15 C -0.24 -4.22 6.43 -36.98 -0.24 -4.46 16 16 C -0.07 -1.04 9.80 -40.33 -0.40 -1.44 16 17 C -0.11 -1.46 5.75 -104.87 -0.60 -2.06 16 18 C -0.21 -2.54 6.16 -34.76 -0.21 -2.75 16 19 S 0.19 2.62 22.09 -107.50 -2.37 0.25 16 20 C -0.05 -0.41 6.24 -27.22 -0.17 -0.58 16 21 C -0.11 -0.82 5.23 -26.61 -0.14 -0.96 16 22 C -0.09 -0.73 2.68 -90.58 -0.24 -0.97 16 23 H 0.07 0.62 8.10 -51.93 -0.42 0.19 16 24 C -0.15 -0.93 9.17 37.16 0.34 -0.59 16 25 C -0.05 -0.48 5.42 -27.11 -0.15 -0.62 16 26 H 0.09 2.52 6.07 -51.92 -0.32 2.21 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.39 7.62 7.65 -40.82 -0.31 7.31 16 31 H 0.15 2.27 8.05 -52.49 -0.42 1.85 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.07 0.42 8.11 -51.93 -0.42 0.00 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -30.80 339.27 -10.04 -40.84 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.05 Total: 3.77 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -2.14 Total: -11.67 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.34 Total: -40.38 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.09 Total: -13.69 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.37 Total: 0.25 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.80 -10.04 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.765 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds