Wall clock time and date at job start Tue Mar 31 2020 07:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46707 * 2 1 4 4 C 1.50704 * 109.47044 * 119.99910 * 2 1 3 5 5 H 1.08003 * 119.99473 * 119.99495 * 4 2 1 6 6 C 1.37870 * 120.00330 * 300.00228 * 4 2 1 7 7 N 1.31522 * 119.99900 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00281 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47015 * 89.99488 * 8 6 4 10 10 H 1.48497 * 109.47259 * 209.99572 * 8 6 4 11 11 H 1.48497 * 109.47152 * 330.00029 * 8 6 4 12 12 N 1.46494 * 109.47016 * 240.00003 * 2 1 3 13 13 C 1.34775 * 119.99874 * 84.99903 * 12 2 1 14 14 O 1.21704 * 120.00223 * 359.97438 * 13 12 2 15 15 C 1.46589 * 120.00008 * 180.02562 * 13 12 2 16 16 C 1.36116 * 125.45454 * 180.02562 * 15 13 12 17 17 C 1.38280 * 114.09962 * 179.97438 * 16 15 13 18 18 C 1.35238 * 113.92330 * 359.97438 * 17 16 15 19 19 S 1.70755 * 111.11248 * 359.97438 * 18 17 16 20 20 C 1.51940 * 124.37265 * 179.97438 * 18 17 16 21 21 C 1.53094 * 108.62498 * 343.46421 * 20 18 17 22 22 C 1.53146 * 109.06488 * 50.09150 * 21 20 18 23 23 H 1.08999 * 109.51127 * 49.03245 * 22 21 20 24 24 C 1.53003 * 109.50747 * 169.17071 * 22 21 20 25 25 C 1.52330 * 123.07829 * 180.02562 * 17 16 15 26 26 H 1.09008 * 109.47293 * 300.00046 * 1 2 3 27 27 H 1.09000 * 109.47430 * 59.99957 * 1 2 3 28 28 H 1.09008 * 109.47156 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00010 * 180.02562 * 7 6 4 30 30 H 0.97003 * 120.00422 * 265.00168 * 12 2 1 31 31 H 1.08002 * 122.95333 * 359.97438 * 16 15 13 32 32 H 1.08996 * 109.71859 * 223.68165 * 20 18 17 33 33 H 1.09003 * 109.58698 * 103.16543 * 20 18 17 34 34 H 1.09002 * 109.55199 * 290.19058 * 21 20 18 35 35 H 1.09003 * 109.55220 * 169.99562 * 21 20 18 36 36 H 1.09004 * 109.46919 * 60.00607 * 24 22 21 37 37 H 1.09004 * 109.47002 * 179.97438 * 24 22 21 38 38 H 1.08996 * 109.47579 * 300.00388 * 24 22 21 39 39 H 1.08992 * 109.57898 * 42.89060 * 25 17 16 40 40 H 1.09003 * 109.57684 * 282.48888 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9493 5.1120 11 1 2.4858 -2.5663 3.7119 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8571 1.1625 -2.4119 15 6 2.6350 -0.7094 -3.5541 16 6 2.8075 -0.1410 -4.7789 17 6 3.2816 -1.0110 -5.7434 18 6 3.4882 -2.2693 -5.2930 19 16 3.0933 -2.4025 -3.6371 20 6 4.0041 -3.4132 -6.1498 21 6 3.8479 -3.0293 -7.6235 22 6 4.4469 -1.6372 -7.8440 23 1 5.4417 -1.5945 -7.4006 24 6 4.5429 -1.3541 -9.3446 25 6 3.5486 -0.5908 -7.1831 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 0.7095 1.1617 3.4844 30 1 2.2490 -1.6318 -1.1526 31 1 2.5929 0.8983 -4.9797 32 1 3.4283 -4.3155 -5.9441 33 1 5.0565 -3.5902 -5.9278 34 1 2.7903 -3.0173 -7.8872 35 1 4.3710 -3.7545 -8.2468 36 1 3.5472 -1.3949 -9.7864 37 1 4.9689 -0.3630 -9.5008 38 1 5.1803 -2.1024 -9.8155 39 1 4.0471 0.3783 -7.1942 40 1 2.6053 -0.5249 -7.7252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318559.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:43 Heat of formation + Delta-G solvation = -54.817954 kcal Electronic energy + Delta-G solvation = -20677.375895 eV Core-core repulsion = 17581.451148 eV Total energy + Delta-G solvation = -3095.924748 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85080 -40.06800 -36.96420 -36.34691 -34.41772 -32.87617 -31.49346 -30.02056 -27.58025 -27.38839 -25.57751 -23.83999 -23.02271 -21.57467 -20.94764 -19.83254 -18.89060 -18.20022 -17.25693 -16.96858 -16.33426 -16.08785 -15.62282 -15.46725 -15.08587 -14.88729 -14.53656 -14.45232 -14.00611 -13.77730 -13.63485 -13.35887 -13.04262 -12.95888 -12.91914 -12.80387 -12.70402 -12.31513 -12.21255 -12.14604 -12.08548 -11.48422 -11.39893 -11.25305 -11.17558 -11.05258 -10.63931 -9.98213 -9.59464 -9.29458 -8.20901 -6.39400 -0.48220 0.45739 0.93591 1.33536 1.43918 1.44917 1.55958 2.21545 2.28597 2.50787 3.09463 3.62570 3.75303 3.93986 3.97767 4.12644 4.20559 4.39527 4.58678 4.61859 4.67230 4.75844 4.83510 4.85975 4.87462 4.97622 5.01403 5.02459 5.07613 5.09720 5.22369 5.33978 5.37584 5.48588 5.51022 5.53897 5.57487 5.61052 5.82276 6.02864 6.65452 6.78271 7.22270 7.37910 8.85915 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.034178 B = 0.003279 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.051971 B = 8538.227868 C = 9065.190128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H 0.001 0.999 4 C -0.551 4.551 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.976 3.024 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.259 1.259 12 N -0.700 5.700 13 C 0.572 3.428 14 O -0.592 6.592 15 C -0.294 4.294 16 C -0.057 4.057 17 C -0.129 4.129 18 C -0.189 4.189 19 S 0.223 5.777 20 C -0.050 4.050 21 C -0.107 4.107 22 C -0.090 4.090 23 H 0.070 0.930 24 C -0.143 4.143 25 C -0.049 4.049 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.042 0.958 29 H 0.267 0.733 30 H 0.400 0.600 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.751 -11.977 -22.124 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.019 0.981 4 C -0.589 4.589 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.800 3.200 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.183 1.183 12 N -0.347 5.347 13 C 0.359 3.641 14 O -0.476 6.476 15 C -0.414 4.414 16 C -0.091 4.091 17 C -0.141 4.141 18 C -0.309 4.309 19 S 0.494 5.506 20 C -0.089 4.089 21 C -0.146 4.146 22 C -0.109 4.109 23 H 0.089 0.911 24 C -0.201 4.201 25 C -0.088 4.088 26 H 0.090 0.910 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.234 0.766 31 H 0.156 0.844 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.471 -12.244 -20.869 25.323 hybrid contribution -0.064 1.244 0.304 1.282 sum 7.407 -11.001 -20.566 24.471 Atomic orbital electron populations 1.21916 0.97969 0.99653 0.99778 1.18444 0.91392 0.91987 0.81395 0.98065 1.21505 1.32971 1.13744 0.90690 0.90903 1.25832 0.94707 0.95587 1.02363 1.70052 1.36751 1.23847 1.24808 0.85286 0.77827 0.79188 0.77705 1.20257 1.20668 1.18252 1.46208 1.65059 1.13769 1.09704 1.17557 0.77465 0.86029 0.83001 1.90732 1.53871 1.17314 1.85654 1.24247 1.18089 1.00759 0.98327 1.20747 0.96619 1.01262 0.90473 1.19656 1.04438 0.91830 0.98185 1.25204 1.06392 1.00322 0.98948 1.82761 1.59212 1.03674 1.04933 1.20637 1.01900 0.92926 0.93403 1.21647 1.01951 0.96787 0.94176 1.21133 0.98790 0.94395 0.96576 0.91121 1.21797 1.02332 1.02016 0.93918 1.20667 1.00698 0.99345 0.88106 0.90965 0.96970 0.93932 0.92360 0.76565 0.84363 0.88782 0.88609 0.91581 0.88845 0.92277 0.92555 0.91438 0.90485 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.13 9.26 71.98 0.67 -6.46 16 2 C 0.27 14.83 2.56 44.25 0.11 14.94 16 3 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 4 C -0.55 -30.16 8.73 25.60 0.22 -29.93 16 5 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -53.39 11.32 21.45 0.24 -53.15 16 8 Si 0.98 42.46 29.54 68.60 2.03 44.48 16 9 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 12 N -0.70 -32.27 5.06 -450.17 -2.28 -34.55 16 13 C 0.57 26.27 7.75 86.42 0.67 26.94 16 14 O -0.59 -32.10 16.49 -4.36 -0.07 -32.17 16 15 C -0.29 -10.47 6.43 23.96 0.15 -10.32 16 16 C -0.06 -1.79 9.80 21.79 0.21 -1.57 16 17 C -0.13 -3.09 5.75 -20.02 -0.12 -3.20 16 18 C -0.19 -4.07 6.16 25.39 0.16 -3.91 16 19 S 0.22 5.78 22.09 -56.49 -1.25 4.54 16 20 C -0.05 -0.67 6.24 30.28 0.19 -0.48 16 21 C -0.11 -1.17 5.23 30.67 0.16 -1.01 16 22 C -0.09 -1.14 2.68 -10.77 -0.03 -1.17 16 23 H 0.07 0.95 8.10 -2.39 -0.02 0.94 16 24 C -0.14 -1.36 9.17 71.98 0.66 -0.70 16 25 C -0.05 -0.85 5.42 30.35 0.16 -0.68 16 26 H 0.07 4.12 6.07 -2.38 -0.01 4.10 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.40 15.96 7.65 -92.71 -0.71 15.25 16 31 H 0.14 4.48 8.05 -2.91 -0.02 4.46 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 0.78 8.10 -2.39 -0.02 0.76 16 35 H 0.09 0.65 8.11 -2.39 -0.02 0.64 16 36 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.08 1.31 8.13 -2.39 -0.02 1.29 16 Total: -1.00 -69.54 339.27 2.67 -66.86 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.33 Total: 20.26 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 3.68 Total: -16.28 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -2.04 Total: -87.70 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.07 Total: -32.17 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -1.25 Total: 4.54 kcal Total: -69.54 2.67 -66.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318559.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.044 kcal (2) G-P(sol) polarization free energy of solvation -69.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds