Wall clock time and date at job start Tue Mar 31 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46975 * 2 1 4 4 C 1.50696 * 109.47121 * 180.02562 * 3 2 1 5 5 O 1.21296 * 120.00121 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00086 * 180.27892 * 4 3 2 7 7 C 1.40144 * 120.00327 * 175.48284 * 6 4 3 8 8 C 1.38650 * 120.09587 * 34.51935 * 7 6 4 9 9 C 1.38255 * 120.00693 * 179.69895 * 8 7 6 10 10 C 1.38294 * 120.20764 * 0.60710 * 9 8 7 11 11 C 1.38197 * 120.20004 * 359.67004 * 10 9 8 12 12 C 1.38785 * 119.98805 * 0.02833 * 11 10 9 13 13 S 1.76205 * 120.10183 * 179.97438 * 12 11 10 14 14 C 1.81404 * 103.00241 * 4.48356 * 13 12 11 15 15 H 1.09002 * 109.46624 * 49.61048 * 14 13 12 16 16 C 1.52993 * 109.46938 * 169.60959 * 14 13 12 17 17 C 1.50690 * 109.46864 * 289.61009 * 14 13 12 18 18 H 1.08000 * 120.00421 * 0.02562 * 17 14 13 19 19 C 1.37882 * 119.99921 * 179.97438 * 17 14 13 20 20 N 1.31517 * 120.00238 * 179.97438 * 19 17 14 21 21 Si 1.86801 * 119.99932 * 359.97438 * 19 17 14 22 22 H 1.48505 * 109.47005 * 89.99852 * 21 19 17 23 23 H 1.48499 * 109.47361 * 209.99765 * 21 19 17 24 24 H 1.48495 * 109.47136 * 330.00187 * 21 19 17 25 25 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47593 * 299.99990 * 1 2 3 27 27 H 1.09005 * 109.47317 * 60.00010 * 1 2 3 28 28 H 1.08998 * 109.46967 * 240.00111 * 2 1 3 29 29 H 1.08994 * 109.47242 * 119.99503 * 2 1 3 30 30 H 1.08998 * 109.47182 * 60.00243 * 3 2 1 31 31 H 1.09005 * 109.47090 * 300.00129 * 3 2 1 32 32 H 0.96994 * 120.00024 * 355.47767 * 6 4 3 33 33 H 1.08001 * 119.99733 * 359.97438 * 8 7 6 34 34 H 1.08003 * 119.89947 * 180.31644 * 9 8 7 35 35 H 1.08004 * 119.90387 * 179.70011 * 10 9 8 36 36 H 1.08001 * 120.00517 * 180.02562 * 11 10 9 37 37 H 1.09004 * 109.46823 * 185.14747 * 16 14 13 38 38 H 1.09007 * 109.47028 * 305.14358 * 16 14 13 39 39 H 1.08997 * 109.47238 * 65.14835 * 16 14 13 40 40 H 0.96995 * 120.00277 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2208 2.6098 0.0049 7 6 5.6190 2.6113 0.0999 8 6 6.3575 1.6009 -0.4968 9 6 7.7371 1.6075 -0.4072 10 6 8.3844 2.6131 0.2872 11 6 7.6565 3.6214 0.8901 12 6 6.2716 3.6261 0.8001 13 16 5.3405 4.9098 1.5683 14 6 6.6253 6.0193 2.2079 15 1 7.3448 6.2353 1.4180 16 6 5.9824 7.3238 2.6829 17 6 7.3311 5.3573 3.3630 18 1 7.0365 4.3679 3.6805 19 6 8.3536 6.0142 4.0141 20 7 8.9693 5.4367 5.0226 21 14 8.8646 7.7246 3.4637 22 1 8.0740 8.7399 4.2050 23 1 10.3098 7.9230 3.7417 24 1 8.6161 7.8707 2.0070 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7380 3.4488 -0.0569 33 1 5.8552 0.8109 -1.0354 34 1 8.3109 0.8224 -0.8770 35 1 9.4621 2.6109 0.3582 36 1 8.1653 4.4054 1.4313 37 1 6.7616 8.0250 2.9819 38 1 5.3961 7.7562 1.8720 39 1 5.3316 7.1196 3.5330 40 1 9.6884 5.8990 5.4809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066802366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:05 Heat of formation + Delta-G solvation = -22.222214 kcal Electronic energy + Delta-G solvation = -20904.555090 eV Core-core repulsion = 17810.043800 eV Total energy + Delta-G solvation = -3094.511290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.28685 -38.10283 -34.81507 -34.42495 -34.15208 -31.30303 -30.47358 -29.73204 -27.59055 -25.39241 -23.15028 -22.46291 -21.85313 -20.98129 -20.03669 -17.68067 -16.92596 -16.82756 -16.43535 -15.94747 -15.42334 -14.65071 -14.59341 -14.32127 -13.87691 -13.65824 -13.36732 -13.24590 -12.88819 -12.65460 -12.43575 -12.12532 -12.04342 -11.90306 -11.47083 -11.34968 -11.29117 -10.97966 -10.89787 -10.73491 -10.48999 -10.09872 -9.86695 -9.59363 -9.54072 -9.11457 -9.02303 -8.76930 -7.90799 -6.60466 -6.26529 -4.31094 1.62807 1.87865 2.37793 2.71732 3.11299 3.19451 3.22008 3.24833 3.37097 4.19780 4.24070 4.63113 4.74025 4.84244 5.01273 5.23559 5.32248 5.44313 5.45620 5.51501 5.56420 5.73861 5.85099 5.93696 5.98469 5.99611 6.06673 6.15606 6.15688 6.17156 6.40951 6.53930 6.65386 6.74996 6.90571 6.94881 7.05953 7.30651 7.45551 7.55270 8.20615 8.23546 8.78055 9.28181 10.83898 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.004282 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.302227 B = 6537.254008 C = 7300.246794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.511 3.489 5 O -0.527 6.527 6 N -0.665 5.665 7 C 0.143 3.857 8 C -0.114 4.114 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.097 4.097 12 C -0.083 4.083 13 S -0.158 6.158 14 C 0.052 3.948 15 H 0.050 0.950 16 C -0.139 4.139 17 C -0.524 4.524 18 H 0.087 0.913 19 C 0.081 3.919 20 N -0.884 5.884 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.292 1.292 24 H -0.265 1.265 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.410 0.590 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.155 0.845 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.163 -4.124 -11.816 16.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.180 4.180 4 C 0.299 3.701 5 O -0.402 6.402 6 N -0.310 5.310 7 C 0.043 3.957 8 C -0.136 4.136 9 C -0.144 4.144 10 C -0.140 4.140 11 C -0.121 4.121 12 C -0.198 4.198 13 S 0.088 5.912 14 C -0.077 4.077 15 H 0.068 0.932 16 C -0.197 4.197 17 C -0.562 4.562 18 H 0.105 0.895 19 C -0.124 4.124 20 N -0.520 5.520 21 Si 0.709 3.291 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.190 1.190 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.247 0.753 33 H 0.153 0.847 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.173 0.827 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.899 -4.621 -11.499 17.181 hybrid contribution 1.582 1.268 -0.057 2.028 sum -10.317 -3.353 -11.556 15.850 Atomic orbital electron populations 1.21793 0.95485 1.01901 1.01819 1.21279 0.95224 0.94572 1.03644 1.21728 0.91116 1.00414 1.04706 1.20880 0.90475 0.83265 0.75481 1.90685 1.70162 1.31220 1.48179 1.43530 1.05321 1.09689 1.72431 1.17214 0.82038 0.96951 0.99513 1.21008 0.93669 0.98541 1.00378 1.20963 0.93869 0.98861 1.00675 1.21090 0.99792 0.94778 0.98382 1.21682 0.92061 1.00290 0.98053 1.21486 0.97057 0.99943 1.01354 1.84300 1.17764 1.22156 1.67019 1.21412 0.93564 0.92700 1.00025 0.93184 1.21985 1.00334 0.96641 1.00784 1.21064 1.17103 1.04426 1.13609 0.89471 1.24982 0.95591 0.97500 0.94338 1.69866 1.23266 1.38067 1.20769 0.86958 0.77220 0.85135 0.79746 1.20159 1.21951 1.19028 0.92450 0.92577 0.92727 0.91258 0.91088 0.88448 0.88808 0.75339 0.84744 0.86351 0.86178 0.82716 0.92712 0.93929 0.91733 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.11 -1.05 5.22 -26.73 -0.14 -1.19 16 3 C -0.14 -1.35 5.70 -27.88 -0.16 -1.51 16 4 C 0.51 7.24 7.68 -10.99 -0.08 7.16 16 5 O -0.53 -9.19 13.40 5.54 0.07 -9.11 16 6 N -0.66 -9.85 5.02 -9.71 -0.05 -9.90 16 7 C 0.14 2.56 6.32 -83.43 -0.53 2.04 16 8 C -0.11 -1.99 8.70 -39.42 -0.34 -2.33 16 9 C -0.12 -2.00 10.04 -39.55 -0.40 -2.40 16 10 C -0.12 -2.12 10.04 -39.58 -0.40 -2.52 16 11 C -0.10 -1.98 8.85 -39.39 -0.35 -2.32 16 12 C -0.08 -1.65 6.11 -38.91 -0.24 -1.89 16 13 S -0.16 -3.11 20.11 -107.50 -2.16 -5.27 16 14 C 0.05 1.14 1.61 -27.89 -0.04 1.10 16 15 H 0.05 1.12 6.39 -51.92 -0.33 0.79 16 16 C -0.14 -2.80 8.61 37.15 0.32 -2.48 16 17 C -0.52 -13.70 7.05 -34.44 -0.24 -13.95 16 18 H 0.09 2.59 7.96 -52.49 -0.42 2.17 16 19 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 20 N -0.88 -25.58 13.96 55.43 0.77 -24.80 16 21 Si 0.88 20.27 24.32 -169.99 -4.13 16.13 16 22 H -0.27 -6.18 6.92 56.52 0.39 -5.79 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -5.79 6.53 56.52 0.37 -5.42 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.41 5.19 7.97 -40.82 -0.33 4.87 16 33 H 0.13 2.28 6.19 -52.49 -0.33 1.95 16 34 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 35 H 0.12 1.87 8.06 -52.48 -0.42 1.44 16 36 H 0.16 3.47 4.82 -52.49 -0.25 3.22 16 37 H 0.05 1.14 3.42 -51.93 -0.18 0.96 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -30.15 333.03 -8.46 -38.61 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.66 Total: 8.27 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -2.33 Total: -18.95 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.72 Total: -34.70 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.07 Total: -9.11 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.13 Total: 16.13 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.16 Total: -5.27 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.15 -8.46 -38.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066802366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.390 kcal (2) G-P(sol) polarization free energy of solvation -30.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds