Wall clock time and date at job start Tue Mar 31 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46975 * 2 1 4 4 C 1.50696 * 109.47121 * 180.02562 * 3 2 1 5 5 O 1.21296 * 120.00121 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00086 * 180.27892 * 4 3 2 7 7 C 1.40144 * 120.00327 * 175.48284 * 6 4 3 8 8 C 1.38650 * 120.09587 * 34.51935 * 7 6 4 9 9 C 1.38255 * 120.00693 * 179.69895 * 8 7 6 10 10 C 1.38294 * 120.20764 * 0.60710 * 9 8 7 11 11 C 1.38197 * 120.20004 * 359.67004 * 10 9 8 12 12 C 1.38785 * 119.98805 * 0.02833 * 11 10 9 13 13 S 1.76205 * 120.10183 * 179.97438 * 12 11 10 14 14 C 1.81404 * 103.00241 * 4.48356 * 13 12 11 15 15 H 1.09002 * 109.46624 * 49.61048 * 14 13 12 16 16 C 1.52993 * 109.46938 * 169.60959 * 14 13 12 17 17 C 1.50690 * 109.46864 * 289.61009 * 14 13 12 18 18 H 1.08000 * 120.00421 * 0.02562 * 17 14 13 19 19 C 1.37882 * 119.99921 * 179.97438 * 17 14 13 20 20 N 1.31517 * 120.00238 * 179.97438 * 19 17 14 21 21 Si 1.86801 * 119.99932 * 359.97438 * 19 17 14 22 22 H 1.48505 * 109.47005 * 89.99852 * 21 19 17 23 23 H 1.48499 * 109.47361 * 209.99765 * 21 19 17 24 24 H 1.48495 * 109.47136 * 330.00187 * 21 19 17 25 25 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47593 * 299.99990 * 1 2 3 27 27 H 1.09005 * 109.47317 * 60.00010 * 1 2 3 28 28 H 1.08998 * 109.46967 * 240.00111 * 2 1 3 29 29 H 1.08994 * 109.47242 * 119.99503 * 2 1 3 30 30 H 1.08998 * 109.47182 * 60.00243 * 3 2 1 31 31 H 1.09005 * 109.47090 * 300.00129 * 3 2 1 32 32 H 0.96994 * 120.00024 * 355.47767 * 6 4 3 33 33 H 1.08001 * 119.99733 * 359.97438 * 8 7 6 34 34 H 1.08003 * 119.89947 * 180.31644 * 9 8 7 35 35 H 1.08004 * 119.90387 * 179.70011 * 10 9 8 36 36 H 1.08001 * 120.00517 * 180.02562 * 11 10 9 37 37 H 1.09004 * 109.46823 * 185.14747 * 16 14 13 38 38 H 1.09007 * 109.47028 * 305.14358 * 16 14 13 39 39 H 1.08997 * 109.47238 * 65.14835 * 16 14 13 40 40 H 0.96995 * 120.00277 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2208 2.6098 0.0049 7 6 5.6190 2.6113 0.0999 8 6 6.3575 1.6009 -0.4968 9 6 7.7371 1.6075 -0.4072 10 6 8.3844 2.6131 0.2872 11 6 7.6565 3.6214 0.8901 12 6 6.2716 3.6261 0.8001 13 16 5.3405 4.9098 1.5683 14 6 6.6253 6.0193 2.2079 15 1 7.3448 6.2353 1.4180 16 6 5.9824 7.3238 2.6829 17 6 7.3311 5.3573 3.3630 18 1 7.0365 4.3679 3.6805 19 6 8.3536 6.0142 4.0141 20 7 8.9693 5.4367 5.0226 21 14 8.8646 7.7246 3.4637 22 1 8.0740 8.7399 4.2050 23 1 10.3098 7.9230 3.7417 24 1 8.6161 7.8707 2.0070 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7380 3.4488 -0.0569 33 1 5.8552 0.8109 -1.0354 34 1 8.3109 0.8224 -0.8770 35 1 9.4621 2.6109 0.3582 36 1 8.1653 4.4054 1.4313 37 1 6.7616 8.0250 2.9819 38 1 5.3961 7.7562 1.8720 39 1 5.3316 7.1196 3.5330 40 1 9.6884 5.8990 5.4809 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066802366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:05 Heat of formation + Delta-G solvation = -39.839949 kcal Electronic energy + Delta-G solvation = -20905.319053 eV Core-core repulsion = 17810.043800 eV Total energy + Delta-G solvation = -3095.275253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51820 -39.43584 -36.32588 -35.73197 -35.29684 -33.25117 -31.92017 -30.95174 -28.50208 -27.27290 -24.45650 -23.89025 -23.27544 -22.20660 -21.18944 -18.99811 -18.91263 -18.03504 -17.83850 -17.20216 -16.92055 -16.08239 -15.87639 -15.57228 -15.34660 -14.94012 -14.89114 -14.61117 -14.19904 -14.03779 -13.94202 -13.62531 -13.05350 -12.98009 -12.87172 -12.65931 -12.61562 -12.43496 -12.08756 -12.02766 -11.62985 -11.58435 -11.51176 -11.33346 -10.88898 -10.83377 -10.77018 -10.50871 -9.30296 -8.36198 -8.11064 -6.42812 0.23096 0.42063 0.82647 1.28547 1.34145 1.43509 1.56190 1.69357 2.09505 2.26100 2.81876 2.98416 3.66482 3.98906 4.00643 4.12635 4.18425 4.31533 4.41488 4.45737 4.53548 4.56997 4.59120 4.64561 4.70862 4.75496 4.87051 4.92733 5.00311 5.23485 5.26700 5.28721 5.29388 5.34136 5.38715 5.47257 5.52788 5.62420 6.05350 6.11045 6.39914 6.61512 7.09736 7.19746 8.80347 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.004282 C = 0.003835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.302227 B = 6537.254008 C = 7300.246794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.131 4.131 4 C 0.507 3.493 5 O -0.563 6.563 6 N -0.661 5.661 7 C 0.142 3.858 8 C -0.121 4.121 9 C -0.111 4.111 10 C -0.127 4.127 11 C -0.121 4.121 12 C -0.111 4.111 13 S -0.131 6.131 14 C 0.043 3.957 15 H 0.050 0.950 16 C -0.136 4.136 17 C -0.515 4.515 18 H 0.037 0.963 19 C 0.027 3.973 20 N -0.937 5.937 21 Si 0.941 3.059 22 H -0.261 1.261 23 H -0.298 1.298 24 H -0.244 1.244 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.421 0.579 33 H 0.141 0.859 34 H 0.153 0.847 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 -3.261 -13.826 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.170 4.170 4 C 0.297 3.703 5 O -0.441 6.441 6 N -0.307 5.307 7 C 0.041 3.959 8 C -0.143 4.143 9 C -0.132 4.132 10 C -0.147 4.147 11 C -0.144 4.144 12 C -0.226 4.226 13 S 0.114 5.886 14 C -0.086 4.086 15 H 0.068 0.932 16 C -0.194 4.194 17 C -0.553 4.553 18 H 0.055 0.945 19 C -0.174 4.174 20 N -0.576 5.576 21 Si 0.767 3.233 22 H -0.186 1.186 23 H -0.225 1.225 24 H -0.167 1.167 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.259 0.741 33 H 0.158 0.842 34 H 0.171 0.829 35 H 0.156 0.844 36 H 0.145 0.855 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.619 -3.748 -13.534 19.563 hybrid contribution 2.068 0.800 0.526 2.279 sum -11.552 -2.948 -13.008 17.645 Atomic orbital electron populations 1.21754 0.93383 1.02497 1.02813 1.21267 0.96950 0.94266 1.02210 1.21816 0.87268 1.00964 1.06966 1.21774 0.92253 0.82274 0.73988 1.90664 1.71280 1.32400 1.49737 1.43610 1.04166 1.10696 1.72238 1.17366 0.83677 0.96241 0.98615 1.21238 0.94248 0.98445 1.00359 1.21330 0.93809 0.98763 0.99270 1.21311 1.00768 0.94418 0.98188 1.21562 0.92714 1.00872 0.99302 1.21631 0.97147 1.01086 1.02729 1.83949 1.16034 1.21715 1.66892 1.21326 0.94654 0.94246 0.98371 0.93184 1.21916 1.00411 0.95251 1.01852 1.21054 1.17261 1.02538 1.14474 0.94453 1.25795 0.95553 1.01754 0.94257 1.70022 1.24492 1.40225 1.22816 0.85958 0.76486 0.80176 0.80644 1.18619 1.22523 1.16741 0.92162 0.91996 0.91262 0.92141 0.93232 0.86841 0.85556 0.74100 0.84163 0.82910 0.84379 0.85469 0.92987 0.90437 0.92199 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.07 16 2 C -0.11 -1.92 5.22 30.59 0.16 -1.76 16 3 C -0.13 -2.19 5.70 29.85 0.17 -2.02 16 4 C 0.51 13.67 7.68 87.66 0.67 14.34 16 5 O -0.56 -19.31 13.40 -3.08 -0.04 -19.35 16 6 N -0.66 -18.71 5.02 -303.02 -1.52 -20.24 16 7 C 0.14 5.00 6.32 38.22 0.24 5.24 16 8 C -0.12 -4.09 8.70 22.37 0.19 -3.89 16 9 C -0.11 -3.46 10.04 22.29 0.22 -3.24 16 10 C -0.13 -4.44 10.04 22.27 0.22 -4.22 16 11 C -0.12 -5.01 8.85 22.39 0.20 -4.81 16 12 C -0.11 -4.41 6.11 22.71 0.14 -4.27 16 13 S -0.13 -5.08 20.11 -56.49 -1.14 -6.22 16 14 C 0.04 1.89 1.61 29.84 0.05 1.94 16 15 H 0.05 2.21 6.39 -2.39 -0.02 2.20 16 16 C -0.14 -5.20 8.61 71.98 0.62 -4.58 16 17 C -0.51 -27.78 7.05 25.60 0.18 -27.60 16 18 H 0.04 2.34 7.96 -2.91 -0.02 2.32 16 19 C 0.03 1.47 5.45 84.66 0.46 1.93 16 20 N -0.94 -56.36 13.96 21.45 0.30 -56.06 16 21 Si 0.94 41.69 24.32 68.60 1.67 43.36 16 22 H -0.26 -10.89 6.92 99.48 0.69 -10.20 16 23 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.24 -9.85 6.53 99.48 0.65 -9.20 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 1.16 8.10 -2.39 -0.02 1.14 16 29 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.42 9.85 7.97 -92.71 -0.74 9.11 16 33 H 0.14 4.59 6.19 -2.91 -0.02 4.57 16 34 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 35 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 36 H 0.13 5.95 4.82 -2.91 -0.01 5.94 16 37 H 0.05 2.02 3.42 -2.38 -0.01 2.01 16 38 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -68.13 333.03 3.75 -64.38 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.23 Total: 28.15 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 4.25 Total: -34.02 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -1.22 Total: -76.29 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.04 Total: -19.35 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.67 Total: 43.36 kcal Atomic # 16 Polarization: -5.08 SS G_CDS: -1.14 Total: -6.22 kcal Total: -68.13 3.75 -64.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066802366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.540 kcal (2) G-P(sol) polarization free energy of solvation -68.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds