Wall clock time and date at job start Tue Mar 31 2020 06:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46756 * 2 1 4 4 C 1.50707 * 109.46776 * 179.97438 * 3 2 1 5 5 O 1.21295 * 120.00163 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99692 * 180.02562 * 4 3 2 7 7 C 1.40142 * 119.99886 * 185.67989 * 6 4 3 8 8 C 1.38644 * 120.10044 * 19.60155 * 7 6 4 9 9 C 1.38248 * 120.01233 * 179.72418 * 8 7 6 10 10 C 1.38307 * 120.20817 * 0.28358 * 9 8 7 11 11 C 1.38200 * 120.19634 * 359.97438 * 10 9 8 12 12 C 1.38784 * 119.98711 * 0.02562 * 11 10 9 13 13 S 1.76211 * 120.09990 * 180.02562 * 12 11 10 14 14 C 1.81394 * 102.99903 * 354.78572 * 13 12 11 15 15 H 1.09005 * 109.47331 * 51.77721 * 14 13 12 16 16 C 1.52998 * 109.47524 * 291.77379 * 14 13 12 17 17 C 1.50703 * 109.47135 * 171.77040 * 14 13 12 18 18 H 1.08002 * 119.99513 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00313 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99977 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99736 * 180.02562 * 19 17 14 22 22 H 1.48492 * 109.47383 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46811 * 120.00072 * 21 19 17 24 24 H 1.48507 * 109.46959 * 239.99653 * 21 19 17 25 25 H 1.08996 * 109.47039 * 60.00095 * 1 2 3 26 26 H 1.09007 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47245 * 299.99753 * 1 2 3 28 28 H 1.08996 * 109.47245 * 240.00246 * 2 1 3 29 29 H 1.08999 * 109.47464 * 120.00186 * 2 1 3 30 30 H 1.09002 * 109.46765 * 60.00474 * 3 2 1 31 31 H 1.08996 * 109.47269 * 299.99764 * 3 2 1 32 32 H 0.96997 * 120.00493 * 5.67246 * 6 4 3 33 33 H 1.08002 * 119.99649 * 0.02562 * 8 7 6 34 34 H 1.07997 * 119.89988 * 180.25207 * 9 8 7 35 35 H 1.07999 * 119.90281 * 179.97438 * 10 9 8 36 36 H 1.08004 * 120.00465 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.46632 * 303.59631 * 16 14 13 38 38 H 1.08991 * 109.47586 * 63.59699 * 16 14 13 39 39 H 1.08998 * 109.47041 * 183.60257 * 16 14 13 40 40 H 0.96996 * 119.99928 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1535 0.3921 0.0006 6 7 4.2208 2.6098 0.0013 7 6 5.6171 2.6129 -0.1183 8 6 6.2732 1.5058 -0.6342 9 6 7.6503 1.5130 -0.7567 10 6 8.3784 2.6201 -0.3602 11 6 7.7336 3.7262 0.1602 12 6 6.3516 3.7277 0.2867 13 16 5.5264 5.1367 0.9493 14 6 6.8970 6.2149 1.4486 15 1 7.5852 6.3386 0.6124 16 6 7.6375 5.5846 2.6298 17 6 6.3547 7.5607 1.8560 18 1 5.2919 7.7486 1.8178 19 6 7.2155 8.5523 2.2763 20 7 8.5099 8.3239 2.3213 21 14 6.5431 10.2202 2.7819 22 1 5.0649 10.2213 2.6412 23 1 6.9065 10.4924 4.1959 24 1 7.1237 11.2729 1.9101 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9563 -0.8900 32 1 3.7394 3.4477 0.0843 33 1 5.7081 0.6396 -0.9452 34 1 8.1591 0.6513 -1.1626 35 1 9.4539 2.6202 -0.4577 36 1 8.3052 4.5892 0.4684 37 1 6.9353 5.4023 3.4433 38 1 8.0841 4.6409 2.3169 39 1 8.4206 6.2618 2.9707 40 1 9.1154 9.0214 2.6174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066802367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:09 Heat of formation + Delta-G solvation = -26.752217 kcal Electronic energy + Delta-G solvation = -20682.534067 eV Core-core repulsion = 17587.826341 eV Total energy + Delta-G solvation = -3094.707726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.44746 -38.20146 -34.88118 -34.49068 -34.13918 -31.13160 -29.98800 -29.78676 -27.64471 -25.41633 -23.22497 -22.58471 -21.69378 -21.13270 -20.12667 -18.01404 -16.95805 -16.66100 -16.18842 -15.99702 -15.21430 -14.80389 -14.54177 -14.26794 -13.98652 -13.58884 -13.36834 -13.26182 -12.95376 -12.59818 -12.19220 -12.05173 -11.90377 -11.76054 -11.40070 -11.35105 -11.10793 -11.05433 -10.94025 -10.64446 -10.54419 -10.34417 -10.08361 -9.57117 -9.43622 -9.13310 -8.98642 -8.55688 -7.94281 -6.57699 -6.26720 -4.36442 1.52159 1.73244 2.40902 2.67225 3.13678 3.17580 3.25886 3.30366 3.58687 4.14383 4.25396 4.55904 4.69414 4.80099 5.05458 5.17325 5.28465 5.33932 5.37701 5.41717 5.51879 5.62506 5.80123 5.83892 5.87334 5.94342 6.10861 6.24673 6.48522 6.51986 6.61599 6.70018 6.74427 6.77192 6.89788 7.26127 7.33958 7.51656 7.55777 7.72490 7.96566 8.13653 8.62763 9.28174 10.79090 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.003994 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.051118 B = 7009.235028 C = 8357.617270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.511 3.489 5 O -0.526 6.526 6 N -0.660 5.660 7 C 0.149 3.851 8 C -0.128 4.128 9 C -0.122 4.122 10 C -0.123 4.123 11 C -0.114 4.114 12 C -0.095 4.095 13 S -0.180 6.180 14 C 0.103 3.897 15 H 0.052 0.948 16 C -0.147 4.147 17 C -0.511 4.511 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.885 5.885 21 Si 0.907 3.093 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.414 0.586 33 H 0.151 0.849 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.039 0.961 38 H 0.022 0.978 39 H 0.097 0.903 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.899 -12.103 -5.219 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.181 4.181 4 C 0.299 3.701 5 O -0.402 6.402 6 N -0.303 5.303 7 C 0.048 3.952 8 C -0.149 4.149 9 C -0.144 4.144 10 C -0.143 4.143 11 C -0.138 4.138 12 C -0.210 4.210 13 S 0.067 5.933 14 C -0.024 4.024 15 H 0.069 0.931 16 C -0.206 4.206 17 C -0.551 4.551 18 H 0.086 0.914 19 C -0.134 4.134 20 N -0.523 5.523 21 Si 0.734 3.266 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.251 0.749 33 H 0.168 0.832 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.156 0.844 37 H 0.058 0.942 38 H 0.041 0.959 39 H 0.115 0.885 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.610 -12.420 -5.026 16.488 hybrid contribution 0.967 1.208 0.250 1.568 sum -8.643 -11.212 -4.775 14.940 Atomic orbital electron populations 1.21795 0.95429 1.01922 1.01899 1.21279 0.95297 0.94483 1.03614 1.21752 0.90973 1.00496 1.04893 1.20912 0.90584 0.83121 0.75485 1.90599 1.69878 1.31471 1.48297 1.43632 1.05601 1.10052 1.71019 1.17310 0.82136 0.94762 1.00943 1.21454 0.94789 0.98466 1.00238 1.20964 0.93622 0.98259 1.01513 1.21035 0.99619 0.93538 1.00135 1.21318 0.92682 0.99676 1.00136 1.21712 0.96627 0.98483 1.04181 1.84940 1.21567 1.12792 1.74021 1.21074 0.90334 0.93396 0.97611 0.93056 1.22167 1.01673 0.98381 0.98383 1.20666 0.94175 0.94371 1.45844 0.91433 1.24894 0.94737 0.98949 0.94788 1.69865 1.02043 1.33905 1.46463 0.86290 0.79309 0.82756 0.78280 1.19477 1.20679 1.20691 0.92651 0.92428 0.92570 0.91209 0.91130 0.88474 0.88531 0.74850 0.83172 0.86263 0.86254 0.84371 0.94211 0.95885 0.88498 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.11 -0.99 5.22 -26.73 -0.14 -1.13 16 3 C -0.14 -1.32 5.70 -27.88 -0.16 -1.48 16 4 C 0.51 6.98 7.68 -10.98 -0.08 6.89 16 5 O -0.53 -8.62 12.89 5.54 0.07 -8.55 16 6 N -0.66 -9.84 5.24 -9.71 -0.05 -9.89 16 7 C 0.15 2.63 6.51 -83.43 -0.54 2.08 16 8 C -0.13 -2.14 8.78 -39.43 -0.35 -2.49 16 9 C -0.12 -1.87 10.04 -39.55 -0.40 -2.27 16 10 C -0.12 -1.97 10.04 -39.57 -0.40 -2.37 16 11 C -0.11 -2.13 8.01 -39.39 -0.32 -2.45 16 12 C -0.09 -1.82 6.05 -38.91 -0.24 -2.06 16 13 S -0.18 -3.74 19.88 -107.50 -2.14 -5.87 16 14 C 0.10 2.48 1.98 -27.88 -0.06 2.43 16 15 H 0.05 1.32 7.00 -51.92 -0.36 0.96 16 16 C -0.15 -3.42 8.58 37.16 0.32 -3.10 16 17 C -0.51 -13.40 8.58 -34.44 -0.30 -13.69 16 18 H 0.07 1.78 7.71 -52.49 -0.40 1.37 16 19 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 20 N -0.89 -23.73 11.30 55.43 0.63 -23.10 16 21 Si 0.91 20.29 29.54 -169.99 -5.02 15.27 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.07 0.72 8.10 -51.93 -0.42 0.29 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.41 5.66 7.51 -40.82 -0.31 5.35 16 33 H 0.15 2.49 5.42 -52.49 -0.28 2.21 16 34 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 35 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 36 H 0.14 2.76 4.77 -52.48 -0.25 2.51 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.48 5.74 -51.93 -0.30 0.19 16 39 H 0.10 2.45 5.98 -51.93 -0.31 2.14 16 40 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 336.17 15.07 5.07 5.07 Total: -1.00 -28.61 336.17 -9.40 -38.01 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.58 Total: 7.65 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -2.38 Total: -18.58 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.58 Total: -32.99 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.07 Total: -8.55 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -2.14 Total: -5.87 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.61 -9.40 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066802367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.259 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds