Wall clock time and date at job start Tue Mar 31 2020 06:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46756 * 2 1 4 4 C 1.50707 * 109.46776 * 179.97438 * 3 2 1 5 5 O 1.21295 * 120.00163 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99692 * 180.02562 * 4 3 2 7 7 C 1.40142 * 119.99886 * 185.67989 * 6 4 3 8 8 C 1.38644 * 120.10044 * 19.60155 * 7 6 4 9 9 C 1.38248 * 120.01233 * 179.72418 * 8 7 6 10 10 C 1.38307 * 120.20817 * 0.28358 * 9 8 7 11 11 C 1.38200 * 120.19634 * 359.97438 * 10 9 8 12 12 C 1.38784 * 119.98711 * 0.02562 * 11 10 9 13 13 S 1.76211 * 120.09990 * 180.02562 * 12 11 10 14 14 C 1.81394 * 102.99903 * 354.78572 * 13 12 11 15 15 H 1.09005 * 109.47331 * 51.77721 * 14 13 12 16 16 C 1.52998 * 109.47524 * 291.77379 * 14 13 12 17 17 C 1.50703 * 109.47135 * 171.77040 * 14 13 12 18 18 H 1.08002 * 119.99513 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00313 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99977 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99736 * 180.02562 * 19 17 14 22 22 H 1.48492 * 109.47383 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.46811 * 120.00072 * 21 19 17 24 24 H 1.48507 * 109.46959 * 239.99653 * 21 19 17 25 25 H 1.08996 * 109.47039 * 60.00095 * 1 2 3 26 26 H 1.09007 * 109.47047 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47245 * 299.99753 * 1 2 3 28 28 H 1.08996 * 109.47245 * 240.00246 * 2 1 3 29 29 H 1.08999 * 109.47464 * 120.00186 * 2 1 3 30 30 H 1.09002 * 109.46765 * 60.00474 * 3 2 1 31 31 H 1.08996 * 109.47269 * 299.99764 * 3 2 1 32 32 H 0.96997 * 120.00493 * 5.67246 * 6 4 3 33 33 H 1.08002 * 119.99649 * 0.02562 * 8 7 6 34 34 H 1.07997 * 119.89988 * 180.25207 * 9 8 7 35 35 H 1.07999 * 119.90281 * 179.97438 * 10 9 8 36 36 H 1.08004 * 120.00465 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.46632 * 303.59631 * 16 14 13 38 38 H 1.08991 * 109.47586 * 63.59699 * 16 14 13 39 39 H 1.08998 * 109.47041 * 183.60257 * 16 14 13 40 40 H 0.96996 * 119.99928 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1535 0.3921 0.0006 6 7 4.2208 2.6098 0.0013 7 6 5.6171 2.6129 -0.1183 8 6 6.2732 1.5058 -0.6342 9 6 7.6503 1.5130 -0.7567 10 6 8.3784 2.6201 -0.3602 11 6 7.7336 3.7262 0.1602 12 6 6.3516 3.7277 0.2867 13 16 5.5264 5.1367 0.9493 14 6 6.8970 6.2149 1.4486 15 1 7.5852 6.3386 0.6124 16 6 7.6375 5.5846 2.6298 17 6 6.3547 7.5607 1.8560 18 1 5.2919 7.7486 1.8178 19 6 7.2155 8.5523 2.2763 20 7 8.5099 8.3239 2.3213 21 14 6.5431 10.2202 2.7819 22 1 5.0649 10.2213 2.6412 23 1 6.9065 10.4924 4.1959 24 1 7.1237 11.2729 1.9101 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9563 -0.8900 32 1 3.7394 3.4477 0.0843 33 1 5.7081 0.6396 -0.9452 34 1 8.1591 0.6513 -1.1626 35 1 9.4539 2.6202 -0.4577 36 1 8.3052 4.5892 0.4684 37 1 6.9353 5.4023 3.4433 38 1 8.0841 4.6409 2.3169 39 1 8.4206 6.2618 2.9707 40 1 9.1154 9.0214 2.6174 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066802367.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:09 Heat of formation + Delta-G solvation = -41.060585 kcal Electronic energy + Delta-G solvation = -20683.154524 eV Core-core repulsion = 17587.826341 eV Total energy + Delta-G solvation = -3095.328183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63201 -39.46789 -36.32837 -35.78419 -35.32735 -32.84223 -31.56484 -30.98960 -28.51303 -27.40271 -24.42261 -23.89235 -23.27290 -22.34644 -21.21457 -19.42469 -18.29120 -18.07974 -17.78085 -17.01414 -16.91708 -16.11996 -15.81439 -15.45707 -15.35215 -14.99899 -14.80263 -14.46015 -14.09246 -13.99533 -13.78576 -13.27804 -13.02882 -12.89905 -12.84900 -12.76149 -12.61554 -12.47149 -12.25464 -12.03520 -11.83632 -11.63213 -11.56738 -11.36023 -10.84006 -10.72405 -10.60432 -10.44930 -9.27193 -8.25366 -8.14111 -6.42193 0.20842 0.36046 0.82879 1.40836 1.43292 1.55073 1.55871 1.81131 2.06547 2.37942 2.80641 3.04723 3.59811 3.92571 3.97444 4.11747 4.16437 4.38620 4.49352 4.50679 4.57354 4.60561 4.69264 4.74745 4.79849 4.85428 4.91689 4.92007 5.17467 5.24285 5.28645 5.29493 5.32748 5.45125 5.49342 5.56023 5.57926 5.73899 6.00666 6.03889 6.36670 6.60836 7.02057 7.25788 8.80539 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.018153 B = 0.003994 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.051118 B = 7009.235028 C = 8357.617270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.508 3.492 5 O -0.554 6.554 6 N -0.661 5.661 7 C 0.147 3.853 8 C -0.138 4.138 9 C -0.107 4.107 10 C -0.123 4.123 11 C -0.129 4.129 12 C -0.120 4.120 13 S -0.170 6.170 14 C 0.100 3.900 15 H 0.026 0.974 16 C -0.132 4.132 17 C -0.532 4.532 18 H 0.062 0.938 19 C 0.027 3.973 20 N -0.910 5.910 21 Si 0.969 3.031 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.419 0.581 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.119 0.881 37 H 0.034 0.966 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.081 -12.903 -5.722 17.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.173 4.173 4 C 0.299 3.701 5 O -0.433 6.433 6 N -0.304 5.304 7 C 0.046 3.954 8 C -0.159 4.159 9 C -0.129 4.129 10 C -0.143 4.143 11 C -0.153 4.153 12 C -0.235 4.235 13 S 0.076 5.924 14 C -0.028 4.028 15 H 0.044 0.956 16 C -0.191 4.191 17 C -0.571 4.571 18 H 0.080 0.920 19 C -0.175 4.175 20 N -0.547 5.547 21 Si 0.793 3.207 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.257 0.743 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.165 0.835 36 H 0.137 0.863 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.093 0.907 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.807 -13.236 -5.537 17.962 hybrid contribution 1.358 1.304 0.334 1.912 sum -9.448 -11.932 -5.203 16.085 Atomic orbital electron populations 1.21760 0.93542 1.02538 1.02728 1.21263 0.96834 0.93985 1.02449 1.21847 0.87373 1.01212 1.06890 1.21735 0.92231 0.82107 0.74049 1.90576 1.70868 1.32322 1.49495 1.43758 1.04718 1.10898 1.71076 1.17496 0.83453 0.94295 1.00196 1.21667 0.95644 0.98213 1.00383 1.21382 0.93144 0.98834 0.99499 1.21316 1.01078 0.92694 0.99219 1.21308 0.92638 1.00163 1.01217 1.21712 0.97067 0.98468 1.06275 1.84594 1.19781 1.13166 1.74871 1.20816 0.91270 0.93946 0.96802 0.95637 1.21980 1.00796 0.98382 0.97978 1.20928 0.94040 0.95765 1.46370 0.92025 1.25683 0.94970 1.02250 0.94613 1.69970 1.03002 1.34952 1.46817 0.85337 0.78778 0.78579 0.78001 1.19072 1.20150 1.20199 0.91610 0.92007 0.91920 0.92142 0.92650 0.86675 0.86062 0.74303 0.82841 0.82690 0.83547 0.86328 0.94666 0.94551 0.90673 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.00 16 2 C -0.11 -1.77 5.22 30.59 0.16 -1.61 16 3 C -0.13 -2.20 5.70 29.85 0.17 -2.03 16 4 C 0.51 13.23 7.68 87.66 0.67 13.90 16 5 O -0.55 -17.65 12.89 -3.08 -0.04 -17.69 16 6 N -0.66 -19.08 5.24 -303.00 -1.59 -20.66 16 7 C 0.15 5.06 6.51 38.22 0.25 5.31 16 8 C -0.14 -4.39 8.78 22.37 0.20 -4.20 16 9 C -0.11 -3.03 10.04 22.29 0.22 -2.81 16 10 C -0.12 -3.75 10.04 22.28 0.22 -3.52 16 11 C -0.13 -4.85 8.01 22.39 0.18 -4.67 16 12 C -0.12 -4.63 6.05 22.71 0.14 -4.49 16 13 S -0.17 -7.14 19.88 -56.49 -1.12 -8.27 16 14 C 0.10 4.94 1.98 29.85 0.06 5.00 16 15 H 0.03 1.38 7.00 -2.39 -0.02 1.37 16 16 C -0.13 -6.34 8.58 71.98 0.62 -5.72 16 17 C -0.53 -28.45 8.58 25.60 0.22 -28.23 16 18 H 0.06 3.29 7.71 -2.91 -0.02 3.27 16 19 C 0.03 1.41 5.30 84.65 0.45 1.86 16 20 N -0.91 -49.69 11.30 21.45 0.24 -49.45 16 21 Si 0.97 41.70 29.54 68.60 2.03 43.73 16 22 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 23 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 24 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 29 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 30 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.42 11.06 7.51 -92.71 -0.70 10.36 16 33 H 0.15 4.87 5.42 -2.91 -0.02 4.85 16 34 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.12 4.90 4.77 -2.91 -0.01 4.88 16 37 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.04 1.59 5.74 -2.39 -0.01 1.58 16 39 H 0.07 3.93 5.98 -2.39 -0.01 3.92 16 40 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -62.30 336.17 4.14 -58.15 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.35 Total: 26.40 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 4.27 Total: -32.20 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -1.34 Total: -70.12 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.04 Total: -17.69 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: -7.14 SS G_CDS: -1.12 Total: -8.27 kcal Total: -62.30 4.14 -58.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066802367.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.090 kcal (2) G-P(sol) polarization free energy of solvation -62.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds